TCONS_00072938-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072938-protein
Unique Name	TCONS_00072938-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	563

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072938-protein ID=TCONS_00072938-protein|Name=TCONS_00072938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MVTPSEEEDHFLNSNNNNTMIHPEQDDNEKKLSSPSQETKRAVDVDEYLE
YVGRFGRCQILLLLLFCLIIIPSTYQTLVMSFAGHNPSWRCVIQPNVTNA
NSTSSSNDTDHCSVAGDISSKDDYYKARCQMNRSLWEYAKDKDYSIVTEW
DLVCEKKTLSYLANSAMFLGWAIGAVVLGWCADKYGRKKVLYPAWFALIL
AAFISGFSHALWLFIVLRVIIGFCQGGVGLCLFVMATELVGPSWRSFAGT
SIWFAFTIALCIIPVQAMYLKWKMLEILLSIPYIWLAGFYFVTPESVRWL
RVKDRIDEAEAILKKVARVNKMQVPDDIRLSSPPKSPMGKKTTFIDLFRP
SHIAISTAIQCFAWFVCGQVYYGISLASDQLGGDMYRDFVLTSLVEIPGN
IILIYLTNKFGRKPTVIYSMLGSGLSCIAVAFIPNSGAAKWGRVSLGMLG
KLGITISFNSIYIWSVELFPTIIRTQGMGLMIVVSRLGAASAPWVAQYLN
EVHDVLPFTVMGGLGVIASIVCFKLKETNGIPTAETMDGAENNENVELKD
FESSNGKSNAVCT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045249	XLOC_045249	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072938	TCONS_00072938	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005828	MFS_sugar_transport-like
IPR005829	Sugar_transporter_CS
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity
GO:0005215	transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 127..534 e-value: 4.0E-34 score: 118.2
None	No IPR available	GENE3D	1.20.1250.20		coord: 335..552 e-value: 4.1E-22 score: 78.0
None	No IPR available	GENE3D	1.20.1250.20		coord: 52..311 e-value: 2.7E-24 score: 85.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
IPR005829	Sugar transporter, conserved site	PROSITE	PS00216	SUGAR_TRANSPORT_1	coord: 178..194
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 62..530 score: 19.97
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 162..526 e-value: 7.59167E-30 score: 118.57
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 161..530

Blast

[Close]

BLAST of TCONS_00072938-protein vs. Swiss-Prot (Human)
Match: S22A4 (Solute carrier family 22 member 4 OS=Homo sapiens GN=SLC22A4 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 1.147e-67
Identity = 153/526 (29.09%), Postives = 264/526 (50.19%), Query Frame = 0

Query:   44 DVDEYLEYVGRFGRCQILLLLLFCLIIIPSTYQTLVMSFAGHNPSWRCVIQPNVTNANSTSSSN----------DTDHCSVAGDISSKDDYYKARCQMNRSL-------------WEYAKDKDYS-IVTEWDLVCEKKTLSYLANSAMFLGWAIGAVVLGWCADKYGRKKVLYPAWFALILAAFISGFSHALWLFIVLRVIIGFCQGGVGLCLFVMATELVGPSWR-SFAGTSIWFAFTIALCIIPVQAMYLK-WKMLEILLSIPYIWLAGFYFVTPESVRWLRVKDRIDEAEAILKKVARVNKMQVPDDIRLSSPPKSPMGKKTTFI-DLFRPSHIAISTAIQCFAWFVCGQVYYGISLASDQLGGDMYRDFVLTSLVEIPGNIILIYLTNKFGRKPTVIYSMLGSGLSCIAVAFIPNSGAAKWGRVSLGMLGKLGITISFNSIYIWSVELFPTIIRTQGMGLMIVVSRLGAASAPWVAQYLNEVHDVLPFTVMGGLGVIASIVCFKLKETNGIPTAETMDGAEN 542
            D DE + ++G +G  Q L+  L    IIP+ +  + + F    P  RC + P+  N +S   +N          +  H      +++  ++     +  R +             WE+++D   S +VTEW+LVCE      L  S  F+G  +G+ V G  +D++GRK VL+         +F+  FS +  +F VL VI+G  Q    +  F++ TE++G S R  F+   +   F +   ++P+ A +++ W+ML + L++P +     ++  PES RWL  + R  EAE I++K A++N + VP  I  S    +P+ ++  FI DLFR  +IAI T +    W +    Y+ +SL +  L GD Y +  L++L+EIP  I    L     R+  +   +   G   + +  +P      +  + L MLGK GIT +F+ +Y+++ EL+PT++R   +G+    SR+G+  AP+   YL   + +LP+ VMG L V+  I+     E+ G+   ET++  + 
Sbjct:    3 DYDEVIAFLGEWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHRCRV-PDAANLSSAWRNNSVPLRLRDGREVPHSCSRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVYLSTVVTEWNLVCEDNWKVPLTTSLFFVGVLLGSFVSGQLSDRFGRKNVLFATMAVQTGFSFLQIFSISWEMFTVLFVIVGMGQISNYVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDWRMLLLALTVPGVLCVPLWWFIPESPRWLISQRRFREAEDIIQKAAKMNNIAVPAVIFDSVEELNPLKQQKAFILDLFRTRNIAIMTIMSLLLWMLTSVGYFALSLDAPNLHGDAYLNCFLSALIEIPAYITAWLLLRTLPRRYIIAAVLFWGGGVLLFIQLVPVD--YYFLSIGLVMLGKFGITSAFSMLYVFTAELYPTLVRNMAVGVTSTASRVGSIIAPYFV-YLGAYNRMLPYIVMGSLTVLIGILTLFFPESLGMTLPETLEQMQK 524

The following BLAST results are available for this feature:

BLAST of TCONS_00072938-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072938-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S22A4	1.147e-67	29.09	Solute carrier family 22 member 4 OS=Homo sapiens ...	[more]

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TCONS_00072938-protein (polypeptide) - C. hemisphaerica