TCONS_00073645-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073645-protein
Unique NameTCONS_00073645-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073645-protein ID=TCONS_00073645-protein|Name=TCONS_00073645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=582bp
IVKYSKLKSQKMSQNFVPLRNQPSTIHTSSRANQNTVSADAVRSRHGIEI
EGDNVPDPISSFDEMEIPQALKIFLKRVKKISKPTPIQMQSTSCLQNQRD
IICLSATGTGKTYGYLLPLCSFLWKRHNNIHHQAQQNQQTSQPLCLIIVP
TRELVNQVLAITRELLSASNIFVQSSNNYGHSQNGHSTPGPSHFVDNSSP
VIHPPFNNTGGRVLPNQWNFHPPRSQFIQQPINTTNYNQYPPYTPPQRPP
YHQQMSNMTNNVGYAYEPQFTNANQQYANIEKIVEQKIIGLCGGTPVHDD
VTRLNIDQPIVVIATPGRLLDLCSRNVLSLDGVRYFVIDECDRILDMGME
EQLRQIVAKMTINSNHDDIRTSLWSATLPESLERIARSAVIHPIYVCCGI
KNSVPRNIQQDVRFLHTYQKREVLLDVLRQIPYPPVLVFTSSKDKVDDVT
EFLQGEQFHAAALHSGYPQDYRNNVITSFRSDEIDILVATDLASRGLDVP
TITHIINYDTPDTIEDYIHRVGRTGRFGRAGNVTTFLTLDCKIANELKEL
LECSNCDVPLQLRDAKMFGQKVLHTEMGDRFA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045734XLOC_045734Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073645TCONS_00073645Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 447..528
e-value: 1.9E-31
score: 120.5
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 423..528
e-value: 1.4E-27
score: 96.1
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 423..566
score: 22.31
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 80..411
e-value: 4.2E-39
score: 145.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 92..396
score: 19.877
NoneNo IPR availableGENE3D3.40.50.300coord: 60..406
e-value: 2.8E-41
score: 140.9
NoneNo IPR availableGENE3D3.40.50.300coord: 407..564
e-value: 7.5E-44
score: 148.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..61
NoneNo IPR availableCDDcd00079HELICccoord: 407..536
e-value: 2.85156E-38
score: 136.214
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 268..384
e-value: 1.8E-19
score: 70.1
coord: 85..170
e-value: 3.7E-13
score: 49.5
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 60..89
score: 9.09
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 273..539
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 44..174

Blast
[Close]
BLAST of TCONS_00073645-protein vs. Swiss-Prot (Human)
Match: DDX41 (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 2.362e-56
Identity = 101/251 (40.24%), Postives = 153/251 (60.96%), Query Frame = 0 
Query:  311 VVIATPGRLLDLCSRNVLSLDGVRYFVIDECDRILDMGMEEQLRQIVAKMTINSNHDDIRTSLWSATLPESLERIARSAVIHPIYVCCGIKNSVPRNIQQDVRFLHTYQKREVLLDVLRQIPYPPVLVFTSSKDKVDDVTEFLQGEQFHAAALHSGYPQDYRNNVITSFRSDEIDILVATDLASRGLDVPTITHIINYDTPDTIEDYIHRVGRTGRFGRAGNVTTFLTLDC--KIANELKELLECSNCDVP 559
            +++ATPGRL+DL  + ++SLD  RY  +DE DR++DMG E  +R I +           +T L+SAT+P+ ++  A+SA++ P+ +  G   +   ++ Q+V ++    K   LL+ L++ P PPVL+F   K  VD + E+L  +   A A+H G  Q+ R   I +FR  + D+LVATD+AS+GLD P I H+INYD P+ IE+Y+HR+GRTGR G  G  TTF+   C   +  +LK LL  +   VP
Sbjct:  316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR-----QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 560

HSP 2 Score: 82.8037 bits (203), Expect = 1.259e-16
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 0 
Query:   42 VRSRHGIEIEGDNVPDPISSFDEMEIPQALKIFLKRVKKISKPTPIQMQSTSCLQNQRDIICLSATGTGKTYGYLLPLCSFLWKRHNNIHHQAQQNQQTSQPLCLIIVPTRELVNQVLAI 161
            VR ++ I +EGD +P PI SF EM+ P A+   LK+ K I  PTPIQ+Q    + + RD+I ++ TG+GKT  + LP+  F  ++   +    ++      P  LII P+REL  Q   I
Sbjct:  163 VRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKK-KGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREG-----PYGLIICPSRELARQTHGI 276
The following BLAST results are available for this feature:
BLAST of TCONS_00073645-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX412.362e-5640.24Probable ATP-dependent RNA helicase DDX41 OS=Homo ... [more]
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