TCONS_00000022 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000022
Unique Name	TCONS_00000022
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1538

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000001:537567..542449+
coding sequence from alignment at sc0000001:537567..542449+

transcript sequence

>TCONS_00000022 ID=TCONS_00000022|Name=TCONS_00000022|organism=Clytia hemisphaerica|type=transcript|length=1538bp
tatttttcataggtGTCACAGACGAACCAGACAACAATACCGAAAATCTA
ACGTGCCAAAGTCCTCGTAAAAGTCCGCATTCCAACGCGACCGGCAACCA
ATCTCATAagaaaacaatgacgtcatcaagtcaCTCCTCCACATCGtcat
caatgacgtcatcttcaTCGTTCTCCTCCTTAGATGATTTAGCGAGTTCG
CATGACAGCGAGTTGGAGAGGAATAAAGAGTTGATGAAAGAAGAGTATAA
GAGATATTTGGAGGATCCGAATAGCACTGAAATAAGCAATGCAGTACTGT
CAAAATCATTCTAATTGTATGGTCAAATAAACTAAGGCTTCGCACGATTG
GAATATTTCGAGGACCCGAATAGCATTGAAATAAGCAATGCAGTACTGTC
AAAATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAG
AATATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCT
AAATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAGA
ATATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCTA
AATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAGAA
TATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCTAA
ATCATTCTAATGGTATGGTCAAATAAACTAAAACTTCGCACGTATGGAAT
ATTTAGAGGACCCGAATAACACAGAAAtaagaaaaatcattttaatggTC
TAATAATGGTATGGTCAGATAAACTATATATGGAATATTCAGAGGATCCG
AATGGCACAAAAATGAGAAATACAGCATTGTCAAAATCCTTTTGATTGGA
ATCTTAAAGAGCTGTCATTCGGAGAGGAACAATTGCACCTGAAGACGCAG
ATAATCCAGACCTGTAGAAAGTAGGTTCGACCACTAAAGAAAGAAACAAA
CAGCGCAGAATTATTAAAATCGCCAGTTGATGGCGAACTATTCTTAGTAT
TGGATCAAGCTCGACTAATTTTGGAACATCTGACACTTTCAATAAATCAG
GCTTCCTTTTTTCAATAGTTCACGAAAATTTCTTTTAATGAAGTGCGTTT
CTTTCACCGTGAATTTGTGTGTCGCCGAAAGAAAAATCTTATCCAAAATC
TCATGATCGACATCATTatcttcaaaacatttttgtgtTATCTTTTGACG
CCATATATCCTATATACCGTGCctgaagaaagaaagaaatacaAAATTCT
TAACTGGCGCATCGATAATATGCTTAATTTAACAATATTATTTAActgta
aaattaaaaatttatcaacatctgctttgtaaaatatttttaattgtcAA
TCATAGATTTTTGACCAGGTTAAATATGAACGattttgttaaactttttt
tatatgcaAACTCAATGTATTATTTATTGAACTGATGATatattttattg
aaagaaaacttaTGAACATTACCTAATTTCAAAAACAA

Run BLAST on NCBI

protein sequence of TCONS_00000022-protein

>TCONS_00000022-protein ID=TCONS_00000022-protein|Name=TCONS_00000022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
FFIGVTDEPDNNTENLTCQSPRKSPHSNATGNQSHKKTMTSSSHSSTSSS
MTSSSSFSSLDDLASSHDSELERNKELMKEEYKRYLEDPNSTEISNAVLS
KSF

Run BLAST on NCBI

transcript from alignment at sc0000001:537567..542449+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000022 ID=TCONS_00000022|Name=TCONS_00000022|organism=Clytia hemisphaerica|type=transcript|length=4883bp|location=Sequence derived from alignment at sc0000001:537567..542449+ (Clytia hemisphaerica)
tatttttcataggtGTCACAGACGAACCAGACAACAATACCGAAAATCTA
ACGTGCCAAAGTCCTCGTAAAAGTCCGCATTCCAACGCGACCGGCAACCA
ATCTCATAagaaaacaatgacgtcatcaagtcaCTCCTCCACATCGtcat
caatgacgtcatcttcaTCGTTCTCCTCCTTAGATGATTTAGCGAGTTCG
CATGACAGCGAGTTGGAGAGGAATAAAGAGTTGATGAAAGAAGAGTATAA
GAGATATTTGGAGGATCCGAATAGCACTGAAATAAGCAATGCAGTACTGT
CAAAATCATTCTAATTGTATGGTCAAATAAACTAAGGCTTCGCACGATTG
GAATATTTCGAGGACCCGAATAGCATTGAAATAAGCAATGCAGTACTGTC
AAAATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAG
AATATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCT
AAATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAGA
ATATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCTA
AATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAGAA
TATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCTAA
ATCATTCTAATGGTATGGTCAAATAAACTAAAACTTCGCACGTATGGAAT
ATTTAGAGGACCCGAATAACACAGAAAtaagaaaaatcattttaatggTC
TAATAATGGTATGGTCAGATAAACTATATATGGAATATTCAGAGGATCCG
AATGGCACAAAAATGAGAAATACAGCATTGTCAAAATCCTTTTGATTGGA
ATCTTAAAGAGCTGTCATTCGGAGAGGAACAATTGCACCTGAAGACGCAG
ATAATCCAGACCTGTAGAAAGTAGGTTCGACCACTAAAGAAAGAAACAAA
CAGCGCAGAATTATTAAAATCGCCAGTTGATGGCGAACTATTCTTAGTAT
TGGATCAAGCTCGACTAATTTTGGAACATCTGACACTTTCAATAAATCAG
GCTTCCTTTTTTCAATAGTTCACGAAAATTTCTTTTAATGAAGTGCGTTT
CTTTCACCGTGAATTTGTGTGTCGCCGAAAGAAAAATCTTATCCAAAATC
ATTTTACCAATCACCTATAAAGAACCGgttaacccagctggcacacaatg
ttgttttaacgttactccaacgttatatggacgttgcgaacgttagataa
acgttgacacaacgttgtgtgccagctgggtaaggGTTGATAGGTGTTTT
TGTCTAGAGAAGGTTTTTATGAATGTGATTTTGAAAGGTATGTATTGAAT
TTAGAAAACCATTGACATTAGGGAGGTTAAGcatcaaagataaatctacG
CGACGAACGGGCCTTTTCTCTGCAAGATGGTAAGGGTAGCAAAGTAGATG
TTATATTCTTCTTTGTTTACAATGAAGATTTTCACGGTTTTTCGTTCTTG
AGCtgttttagcctggattctagaaaatgcaggtccacatgtttactgca
ggttgtTGGTCAAAACCCGTCCGTCGTCGCGCtgatttatctttgatact
taACTTCCCTAATACCCCCTTAAGTAAAAATCCCGCACGAGCTAAAATCT
TTAGCAGAAAAAGATTTCAGACACGTACGACTATTATCATACAGATAAGG
CGTGTTAAAGGAATGGCCTCACTGCCACATTCNTCTCTACATAAAAATAG
ACTGGCACgtcagtcgggctggaacggtatcacgcgggaaaagtgagcgt
aggagttaggtaagcgtaggaagaaattttgtcggcggcgagGGCTGAAA
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ttctagcaaacgcccgccgcctttatgttcccgccctctgacatgattaa
tttacagactagtttgctagtctacatAAAAAGTGTGATTTAGACTCATG
ATCGACATCATTatcttcaaaacatttttgtgtTATCTTTTGACGCCATA
TATCCTATATACCGTGCctgaagaaagaaagaaatacaAAATTCTTAACT
GGCGCATCGATAATATGCTTAATTTAACAATATTATTTAActgtaaaatt
aaaaatttatcaacatctgctttgtaaaatatttttaattgtcAATCATA
GATTTTTGACCAGGTTAAATATGAACGattttgttaaactttttttatat
gcaAACTCAATGTATTATTTATTGAACTGATGATatattttattgaaaga
aaacttaTGAACATTACCTAATTTCAAAAACAA

Coding sequence (CDS) from alignment at sc0000001:537567..542449+

>TCONS_00000022 ID=TCONS_00000022|Name=TCONS_00000022|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000001:537567..542449+ (Clytia hemisphaerica)
tttttcataggtGTCACAGACGAACCAGACAACAATACCGAAAATCTAAC
GTGCCAAAGTCCTCGTAAAAGTCCGCATTCCAACGCGACCGGCAACCAAT
CTCATAagaaaacaatgacgtcatcaagtcaCTCCTCCACATCGtcatca
atgacgtcatcttcaTCGTTCTCCTCCTTAGATGATTTAGCGAGTTCGCA
TGACAGCGAGTTGGAGAGGAATAAAGAGTTGATGAAAGAAGAGTATAAGA
GATATTTGGAGGATCCGAATAGCACTGAAATAAGCAATGCAGTACTGTCA
AAATCATTCTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000012	XLOC_000012	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000022-protein	TCONS_00000022-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000022-exon-sc0000001-1491911889:537567..538766	TCONS_00000022-exon-sc0000001-1491911889:537567..538766	Clytia hemisphaerica	exon
TCONS_00000022-exon-sc0000001-1510915933:537567..538766	TCONS_00000022-exon-sc0000001-1510915933:537567..538766	Clytia hemisphaerica	exon
TCONS_00000022-exon-sc0000001-1575043694:537567..538766	TCONS_00000022-exon-sc0000001-1575043694:537567..538766	Clytia hemisphaerica	exon
TCONS_00000022-exon-sc0000001-1491911889:542112..542449	TCONS_00000022-exon-sc0000001-1491911889:542112..542449	Clytia hemisphaerica	exon
TCONS_00000022-exon-sc0000001-1510915933:542112..542449	TCONS_00000022-exon-sc0000001-1510915933:542112..542449	Clytia hemisphaerica	exon
TCONS_00000022-exon-sc0000001-1575043694:542112..542449	TCONS_00000022-exon-sc0000001-1575043694:542112..542449	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001	supercontig	sc0000001:537567..542449 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.15428	6.24765	3.65729	3.4598	24.8039	17.9788	14.7579	15.005	6.79362	8.69363	5.49027	5.61809	3.79937	3.4663	3.638	5.48205	4.66929	5.54586	3.91609	4.33546	4.12965	4.56994	10.4986	8.59859	5.81825	5.85771	3.11136	2.30484	6.93329	7.3658

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00000022 vs. Swiss-Prot (Human)

BLAST of TCONS_00000022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00000022 (transcript) - C. hemisphaerica