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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000108 ID=TCONS_00000108|Name=TCONS_00000108|organism=Clytia hemisphaerica|type=transcript|length=941bp
TGAAAAATCATCTGCAAACAGTTTCAAATTGTCAAGTTCAGTGTAAACAA
CAAGACAACAAACACTCTCAAAGATGAAGATTTGGAAAGCTTTGTTACTC
GTCTCGTTCTTGGTGTACACAGTTCACTGTGAAACAGAACAAGAGGCGAA
AGAAGCAAACATTGAAGCAGAGGAGGATGAACTTCCAGGAATGGAAATGA
GTGACGAAGAAACGATCAACCAACAAGAAGATGCAGATGAAGAAGAAATG
AAAGATGAACTTGAAGATCAAGATCTGAAAGAAGATGAAGACGCCAGCTA
CAAGCGATTTCTTTACGCCAAGAAGATCTTCATCTTCAAAGACAAACACC
CTGTTCAATGTCAACTCACCAAAAGCAGTAACAAACCAATCAGATGATAC
CTCAAGTACGCATACGTCAAACGTCATGGTAACAAATGCATCAAAAAGAA
AGTGTATAAATTTTGCGTTTTCAAATTCACAAAGACCTGTTTGTTCACAT
CCAAATTCATCATCAAGAAATGTTTCAGAATCAGACATGGTGGAGGCTAC
AAAGTCAAATGTCATAAAAGTGCACCACAGTtggtcaaaattcgaaaatc
tGCAGGTGTCATCAATAAAGCCAAATTGGTCAAAGTCTATTACATCAAAC
ACTAGATCTAGACTTTCAACCGAATCGGAGCAAATGAACTGACAAGATTT
CTAAACGGACAACAATTTTTAACTAGCtgctttttataatttttatgtgT
TTGTAAGCTTACATTTTTAAAATCGCTAAATAATATTTGCCAAAAAGGGA
ATTTACTCTTTCGTTTTAAACTATCCTTATTTGATCTTCGGGCATCTTAA
AGTTAAGGTTCTCACCCGTCTGATTTCCCTTCAATGACAGTAAATATAAG
TTTCACTTGGACTTGTGAGTCAAATCTtcctttcaattttc Run BLAST on NCBI protein sequence of TCONS_00000108-protein >TCONS_00000108-protein ID=TCONS_00000108-protein|Name=TCONS_00000108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MKIWKALLLVSFLVYTVHCETEQEAKEANIEAEEDELPGMEMSDEETINQ
QEDADEEEMKDELEDQDLKEDEDASYKRFLYAKKIFIFKDKHPVQCQLTK
SSNKPIR Run BLAST on NCBI transcript from alignment at sc0000001:1974723..1975839+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000108 ID=TCONS_00000108|Name=TCONS_00000108|organism=Clytia hemisphaerica|type=transcript|length=1117bp|location=Sequence derived from alignment at sc0000001:1974723..1975839+ (Clytia hemisphaerica)
TGAAAAATCATCTGCAAACAGTTTCAAATTGTCAAGTTCAGTGTAAACAA
CAAGACAACAAACACTCTCAAAGATGAAGATTTGGAAAGCTTTGTTACTC
GTCTCGTTCTTGGTGTACACAGTTCACTGTGAAACAGAACAAGAGGCGAA
AGAAGCAAACATTGAAGCAGAGGAGGATGAACTTCCAGGAATGGAAATGA
GTGACGAAGAAACGATCAACCAACAAGAAGATGCAGATGAAGAAGAAATG
AAAGATGAACTTGAAGATCAAGATCTGAAAGAAGGTGAGAATTTTACTTA
AGCCTCTATATATTTTAGTTTACTTTATCTTCTTCTTTCACACCAAAGTA
AAGCAAAAGCTTTACGTCTGAACTTtgaaccttttttttttaattcagaa
TTTTTCTAATCATAAGCCAGTCAATTGAAATTTGAATAAGGCTTTTTACT
CCGGTTTCAGATGAAGACGCCAGCTACAAGCGATTTCTTTACGCCAAGAA
GATCTTCATCTTCAAAGACAAACACCCTGTTCAATGTCAACTCACCAAAA
GCAGTAACAAACCAATCAGATGATACCTCAAGTACGCATACGTCAAACGT
CATGGTAACAAATGCATCAAAAAGAAAGTGTATAAATTTTGCGTTTTCAA
ATTCACAAAGACCTGTTTGTTCACATCCAAATTCATCATCAAGAAATGTT
TCAGAATCAGACATGGTGGAGGCTACAAAGTCAAATGTCATAAAAGTGCA
CCACAGTtggtcaaaattcgaaaatctGCAGGTGTCATCAATAAAGCCAA
ATTGGTCAAAGTCTATTACATCAAACACTAGATCTAGACTTTCAACCGAA
TCGGAGCAAATGAACTGACAAGATTTCTAAACGGACAACAATTTTTAACT
AGCtgctttttataatttttatgtgTTTGTAAGCTTACATTTTTAAAATC
GCTAAATAATATTTGCCAAAAAGGGAATTTACTCTTTCGTTTTAAACTAT
CCTTATTTGATCTTCGGGCATCTTAAAGTTAAGGTTCTCACCCGTCTGAT
TTCCCTTCAATGACAGTAAATATAAGTTTCACTTGGACTTGTGAGTCAAA
TCTtcctttcaattttc Coding sequence (CDS) from alignment at sc0000001:1974723..1975839+ >TCONS_00000108 ID=TCONS_00000108|Name=TCONS_00000108|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000001:1974723..1975839+ (Clytia hemisphaerica)
ATGAAGATTTGGAAAGCTTTGTTACTCGTCTCGTTCTTGGTGTACACAGT
TCACTGTGAAACAGAACAAGAGGCGAAAGAAGCAAACATTGAAGCAGAGG
AGGATGAACTTCCAGGAATGGAAATGAGTGACGAAGAAACGATCAACCAA
CAAGAAGATGCAGATGAAGAAGAAATGAAAGATGAACTTGAAGATCAAGA
TCTGAAAGAAGATGAAGACGCCAGCTACAAGCGATTTCTTTACGCCAAGA
AGATCTTCATCTTCAAAGACAAACACCCTGTTCAATGTCAACTCACCAAA
AGCAGTAACAAACCAATCAGATGAATGAAGATTTGGAAAGCTTTGTTACT
CGTCTCGTTCTTGGTGTACACAGTTCACTGTGAAACAGAACAAGAGGCGA
AAGAAGCAAACATTGAAGCAGAGGAGGATGAACTTCCAGGAATGGAAATG
AGTGACGAAGAAACGATCAACCAACAAGAAGATGCAGATGAAGAAGAAAT
GAAAGATGAACTTGAAGATCAAGATCTGAAAGAAGATGAAGACGCCAGCT
ACAAGCGATTTCTTTACGCCAAGAAGATCTTCATCTTCAAAGACAAACAC
CCTGTTCAATGTCAACTCACCAAAAGCAGTAACAAACCAATCAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000108-exon-sc0000001-1491911889:1974723..1975006 | TCONS_00000108-exon-sc0000001-1491911889:1974723..1975006 | Clytia hemisphaerica | exon |
| TCONS_00000108-exon-sc0000001-1510915933:1974723..1975006 | TCONS_00000108-exon-sc0000001-1510915933:1974723..1975006 | Clytia hemisphaerica | exon |
| TCONS_00000108-exon-sc0000001-1575043694:1974723..1975006 | TCONS_00000108-exon-sc0000001-1575043694:1974723..1975006 | Clytia hemisphaerica | exon |
| TCONS_00000108-exon-sc0000001-1491911889:1975183..1975839 | TCONS_00000108-exon-sc0000001-1491911889:1975183..1975839 | Clytia hemisphaerica | exon |
| TCONS_00000108-exon-sc0000001-1510915933:1975183..1975839 | TCONS_00000108-exon-sc0000001-1510915933:1975183..1975839 | Clytia hemisphaerica | exon |
| TCONS_00000108-exon-sc0000001-1575043694:1975183..1975839 | TCONS_00000108-exon-sc0000001-1575043694:1975183..1975839 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1974723..1975839 + |
Blast
The following BLAST results are available for this feature:
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