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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000117 ID=TCONS_00000117|Name=TCONS_00000117|organism=Clytia hemisphaerica|type=transcript|length=907bp
TTAACAATGAAGACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGC
AATTCAATGTCACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATG
ACAAATTCAACGAAAAACACAACTCTGTTGATCATCACCAACACATCATT
GAAGAAGTACACACAGAACGTGGAACAGCAGGTGCGACATCAGAATACTC
TGCTACTTACATGGCTGAAAAAGGATTCCAAAAGAACTACGCTTACGGAT
GGAAAACAAAGAACAATTATGGTCATATGCCAGAAATGATTTGGTATAAA
TTCCGTGAACCATTTGTTCCAGCTGAAGTGACATTCAGATCCAACGGTAA
GCTTTTTTTTCAACCTCGTTTATAAGCGCTAAAATANTCATTTGTTCCAG
CTGAAGTGACCTTCAGATCCAACGGAAATGTCAACGAGATGCCGACCAAA
TACCAATTCGTTGGTTCCAACGATCACCACTGCAATGAATATTCTCCATG
GACCATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCAAATACAGATACG
AGAGCAAAAGATGTGCTGTCAGTCATTACCACCAGGCTACATACTTCTGT
TTTGGATTGAGAGTCTTGAACACCAAAGGCAACACTGCTTATGCTGGTGT
CGGGAATGTCAGATTCTTTAAAAGATACGATTCTGCTCATATGTAAATTC
ATCATTAGAATCTTCTCATGTTCTGTATTGATTTATTTACATACATTATA
AATTTCaagcaagaaaatttttgaaaatttctttaaatgtCTTTTTGTTT
TAATATACCACACTttgtgaaattttatttttacgaTATTGTTGAAAATA
CAACCAAAATAtcgacaaaaaatatttttcattaaatatcTGCATCAAAT
AAGATTG Run BLAST on NCBI transcript from alignment at sc0000001:2202531..2206120+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000117 ID=TCONS_00000117|Name=TCONS_00000117|organism=Clytia hemisphaerica|type=transcript|length=3590bp|location=Sequence derived from alignment at sc0000001:2202531..2206120+ (Clytia hemisphaerica)
TTAACAATGAAGACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGC
AATTCAATGTCACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATG
ACAAATTCAACGAAAAACACAACTGTAAGATTTGCGTTATTGGACTTTTC
CTAATTTCCTACCCATTCATTCTTTTGGTCGGTTGAATGACCGAGAGGTG
TCATTTGGGCTCAGTACAAAATTGTAGTTATATCCCTTGACTGCTAAAAA
TACCTTTACAAAGGCCTACGGGGTATCCAAAAACTACTTTTCGGGGTAAC
CATTGAAGCCCGGGGTACTCTAGGTGATGCGAGGCCCTCTAGGGTATGTT
TTTCAGCCTTCTCAAAGTGAAATCTAAAGGGccaaaagtacccaaaaagc
gCAATGTTAGGGTGTAAAGTGAGATAAACGATGTTTTTTGGGTTAACTTT
AATCAATCAAACGAGGTGAATAATATAATAGAGGGATCCAATTTTGAGAC
CCTAATTCTGTCCGTTCAGATCGAATGCCCTTGGGAATAAATAGCTCTTG
TATAAGAATAAGAATGAAGACATTGAATGAAGTGAATACAATCGGgctca
tgttgtcttctgaccagccaccagaaccgttggaaaaccaacggatccgg
cgaaactcgaactcacaaccatgctATTCGCAGACATTTGCTCTATCATT
GAGCTACGGATCCCATATACCAATATATCAACATTCTTATCTTTTTAATC
AGCTGTTGATCATCACCAACACATCATTGAAGAAGTACACACAGAACGTG
GAACAGCAGGTGCGACATCAGAATACTCTGCTACTTACATGGCTGAAAAA
GGATTCCAAAAGAACTACGCTTACGGATGGAAAACAAAGAACAATTATGG
TCATATGCCAGAAATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAG
CTGAAGTGACATTCAGATCCAACGGTAAGCTTTTTTTTCAACCTCGTTTA
TAAGCGCTAAAATANTCATTTGTTCCAGCTGAAGTGACCTTCAGATCCAA
CGGTGAGctttttacaataaaatttgCCTTTATTGTATTCATATAACAAA
CAGTCTAGGAAACATAAAAACCCATCCACAATAAAttataaaaacgaaag
tggtctcttctaccaTGAAAAATTCTAGAATGTGTAAGAACGAAGCTATA
GCTATAGCAGCTATAGCCTAAAACTGAGTTTGTTTTCATCTTCAGAGATA
AGTGCTCAATGTTCTTATCTAAGACACAAAGTCTTATTATGATAAGACTT
ATATGATAAGGGGTGGACACTCAAGGTGAAAGGCCTACCGTACGTGCAAC
CCTTAAGGATCCTCTTTCTAAGCTTTCTAAAGCGAACTGTAAGGGTCAAA
ATGAGCAAAGCTGCgaaaaagtgcactctaagggtgtaaaatttggaaaa
tgtgACATGTCATACTTTGCCTTAAAATGCTCAAAATTTTTAGAGAAATT
GAATcaataagggtcgattttttgtTCAAGTTTACTCAAATATTACTACA
ATGAAGTGAATAGagtcgctctcatgttgtcttctgaccagccaccagaa
cgcgttggaaaaccaacggatccggcgaaactcaaactcacaaccatgcc
attcgcgggTATTTGCTCTACCATTAAGCTAcggtaataataataataca
atATTCATGATCAAATTTtactaaattttctctgcactgtaagggtttaa
TTTCAAAGGCATAACTTTAGGCCATACAATCAGTCGTTTTTAAATAGAGT
GATAGACTACCAAAGTCTTTTCTATCACTTTTTAAGGAAATGTCAACGAG
ATGCCGACCAAATACCAATTCGTTGGTTCCAACGATCACCACTGCAATGA
ATATTCTCCATGGACCATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCA
AATACAGGTACGAGCAATATAATATGATAACAAAAGGCTAAAAGTGATTT
TCAGTCTTTCCAAGGCAGGAGAAAGTGAATTTGTTCATTATTCTATATAT
TTAATTTAATATGATCTCAAAGGGCTAAAAGTGattctttaatttttcca
agGCAGAAGAAAgtgaatttcttcattttctgaaaagcTTCCCTGCTCCT
CTTTTTGGATTTAAGAATCATTTAACAATAAATTGAGAGTGCAATTAAAA
AACCGATAGCATTGTTTTAGTGCATTGATGCTTTTCCCATCAGTAAGGGA
TTCCAAcgcagctggcacacaacgttgttttaacgttcaaataacgttat
ttgaacgttatgaatgtcacatggacgttgttttgacgttgtgtgccgtc
tggaAGGGGTCTGTGATAAGCGAGTGTTAATCATTTCCGGATGTACAATT
GTTATACAGTGAGCTCTTGccaattcgaacttctattatttgaatcattc
tataattcgaaataATTCGTAAATCCGCCATCAAAGGGAAACGTAAAAAT
GCTTTCTTTAATTTGAATCCTTcgttaattcgaacaaattacaCTTCCGG
TTCGACTTCTAATaaactattattatccatataatatcattaagtaagcc
attaaagataCCGGTTACtctttcgaagcgggctacacggctttttgcgc
aatgcaattggttcttttcgcatgacgacgagcctacattgtccagagtt
gcccgtcgttaggaaaattcattgtgacgtcactttttcaaaggaaaacg
aGCAATGcgtgacatcatttctctcatttttttcaatattgccctcggtc
aacgcaacaacctcgcaaactcggtcgttacttgacctcgggcaatattt
ctcagtacataGCCCTCataaaccggtcattattgtattattgttaaccg
gttactttttcgaagcgggctacacgactttttgtgtaatgcaattggtt
cttttcgcatgacgacgggcctacactggccagagttgcccgtcgttagg
aaaattcattgtgacgtcactttttcaaaggaaaataaaCAANTACACTg
gccagagttgcccgtcgttaggaaaattcattgtgacgtcactttttcaa
aggaaaatgaacaatgcgtcctcgcaagctcggtcgttacttgacctcgg
gcaatatttctcagtacagccctcataaaccggtcattattgtattagag
tTATACTGTAATATTATTCACTTTACAGATACGAGAGCAAAAGATGTGCT
GTCAGTCATTACCACCAGGCTACATACTTCTGTTTTGGATTGAGAGTCTT
GAACACCAAAGGCAACACTGCTTATGCTGGTGTCGGGAATGTCAGATTCT
TTAAAAGATACGATTCTGCTCATATGTAAATTCATCATTAGAATCTTCTC
ATGTTCTGTATTGATTTATTTACATACATTATAAATTTCaagcaagaaaa
tttttgaaaatttctttaaatgtCTTTTTGTTTTAATATACCACACTttg
tgaaattttatttttacgaTATTGTTGAAAATACAACCAAAATAtcgaca
aaaaatatttttcattaaatatcTGCATCAAATAAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000117-exon-sc0000001-1491911889:2202531..2202654 | TCONS_00000117-exon-sc0000001-1491911889:2202531..2202654 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1510915933:2202531..2202654 | TCONS_00000117-exon-sc0000001-1510915933:2202531..2202654 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1575043694:2202531..2202654 | TCONS_00000117-exon-sc0000001-1575043694:2202531..2202654 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1491911889:2203283..2203582 | TCONS_00000117-exon-sc0000001-1491911889:2203283..2203582 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1510915933:2203283..2203582 | TCONS_00000117-exon-sc0000001-1510915933:2203283..2203582 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1575043694:2203283..2203582 | TCONS_00000117-exon-sc0000001-1575043694:2203283..2203582 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1491911889:2204367..2204487 | TCONS_00000117-exon-sc0000001-1491911889:2204367..2204487 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1510915933:2204367..2204487 | TCONS_00000117-exon-sc0000001-1510915933:2204367..2204487 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1575043694:2204367..2204487 | TCONS_00000117-exon-sc0000001-1575043694:2204367..2204487 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1491911889:2205759..2206120 | TCONS_00000117-exon-sc0000001-1491911889:2205759..2206120 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1510915933:2205759..2206120 | TCONS_00000117-exon-sc0000001-1510915933:2205759..2206120 | Clytia hemisphaerica | exon |
| TCONS_00000117-exon-sc0000001-1575043694:2205759..2206120 | TCONS_00000117-exon-sc0000001-1575043694:2205759..2206120 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2202531..2206120 + |
Blast
The following BLAST results are available for this feature:
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