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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000182 ID=TCONS_00000182|Name=TCONS_00000182|organism=Clytia hemisphaerica|type=transcript|length=2900bpRun BLAST on NCBI protein sequence of TCONS_00000182-protein >TCONS_00000182-protein ID=TCONS_00000182-protein|Name=TCONS_00000182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=637bp MNQQGQGASSANYPIASLYVGDLSPDVTEAMLFEKFSATGPVLSIRVCRDRun BLAST on NCBI transcript from alignment at sc0000001:996620..1005049- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000182 ID=TCONS_00000182|Name=TCONS_00000182|organism=Clytia hemisphaerica|type=transcript|length=8430bp|location=Sequence derived from alignment at sc0000001:996620..1005049- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:996620..1005049- >TCONS_00000182 ID=TCONS_00000182|Name=TCONS_00000182|organism=Clytia hemisphaerica|type=CDS|length=15312bp|location=Sequence derived from alignment at sc0000001:996620..1005049- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000182 vs. Swiss-Prot (Human)
Match: PABP1 (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0 Identity = 384/646 (59.44%), Postives = 465/646 (71.98%), Query Frame = 1
Query: 310 SSANYPIASLYVGDLSPDVTEAMLFEKFSATGPVLSIRVCRDLVTRRSLGYAYVNYQQPADAERAIDTLNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAADDKGQSKGYGFVHYETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIFCKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDAEKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGVNLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSPDEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQRVGPLRYQPGAGMPQQQGYSFQPGQPS-FYIPTMPQGQ-RAAFIAQPVSQMTR----PRWQSANVRQMQGGYPNP----GGNVRGSRPRHP-NSVQP-RRETPYNQKFQQGGNMPNQVMRAGGPVPNQRA-----------QYKLNQNTRNQYXXXXXXXXXXXXXXXXXXXXMMPGQQEPLTASTLAGATPSEQKQMIGERLFPLVQEHQPKMAGKITGMLLEIDNGELLNMLESRDLLKDKVGEAVAVLQAHQAKEAQTQA 2178
S+ +YP+ASLYVGDL PDVTEAML+EKFS GP+LSIRVCRD++TRRSLGYAYVN+QQPADAERA+DT+N+D IKG+P RIMWSQRDP+LR+SGVGNIFIKNLDK ID+K LYDTFSAFGNILSCK+ D+ G SKGYGFVH+ET+EAA+ AI K+NGM+LND+KVFVG F +KER ++G + K+F N++ KNFG + +++L LF +FG S VMTDESG S+GFGF++FE HEDA+KA DE+N KE++G +I RAQKK ER ELK KFEQ K +RI+RYQGVNLY+KNL+DGIDDERLR EFS FGTITSAKVM + SKGFGFVCFSSP+EATKAVTEMNGRI+ TKPLYVALAQRKEER+A L+ Q+MQR+ +R +P +QP PS +++ +PQ Q RAA+ P SQ+ + PRW + QG P+P G +R + PR P ++++P + P Q+ N Q M GP P A QYK RN A P V QQ A QEPLTAS LA A P EQKQM+GERLFPL+Q P +AGKITGMLLEIDN ELL+MLES + L+ KV EAVAVLQAHQAKEA +A
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG-RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR-----AVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPSPRWTA------QGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM---GPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-----QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626 HSP 2 Score: 168.318 bits (425), Expect = 1.938e-43 Identity = 100/298 (33.56%), Postives = 160/298 (53.69%), Query Frame = 1
Query: 568 DPTLRRSGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAAD-DKGQSKGYGFVHYETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIFCKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDAEKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGVNLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSPDEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQ 1458
+P+ + ++++ +L + LY+ FS G ILS ++ D +S GY +V+++ A+ A+ +N ++ K V + +R + ++ NIF KN N L F FG I SC V+ DE+G S+G+GF+ FE E AE+A +++N ++ K+ R + + ER EL ++ + + N+YIKN + +DDERL+ F +FG S KVM D+ SKGFGFV F ++A KAV EMNG+ + K +YV AQ+K ER+ +L +F Q
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282 The following BLAST results are available for this feature:
BLAST of TCONS_00000182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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