TCONS_00000246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000246
Unique NameTCONS_00000246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1061

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000246 ID=TCONS_00000246|Name=TCONS_00000246|organism=Clytia hemisphaerica|type=transcript|length=1061bp
TACTGAGAGTTTGTATGCTATGAGAGgtcattataaaaaagatgTAAATC
ACACAGTAGTATAACACTAAATTTCAGGAaattataataataacaaatcA
TGAAGTAACAATTTCATCAACGAAGACCTACACTATGGAAGGGGAGAATA
GCCAAATGGATGATCGATCAATGATGTTTTCTAAAGATGGCAAATCTTCT
GAAATGACTATCCCTGAAAGAATAGttctttCTGCTGGTTATGATGGTGA
TGATCACAACGAACCATCCAGAAGTCCATTCCGGAATGGCGCACCCAATT
TTGATGACACACCTATTGTCAATCCTGAGGATGTACTTGGAGGCATGAAA
ACTCCACCGTCTGTTTTGACTATTGACCATGGTCCAAATACATTTGGTAC
ACCAAATTGGCATACAGAGGGCGATGGAGCTGATGATTCAGAGTCTgaca
agaaaaattacaaatacaAATTCAACCGTGCTCCTACCGATGACCAAGAC
GATGATTTTAGTTATGGTAGTGTACCTGCTGAACGATCGGTTGTCATTGC
TGGTCAGGAGGACTACCTTCATCACCACGTGCCATTTGACGATCCCAGGG
CCATGCAACAATGGTATACAAGCATGCAACGCAGGCTTACCATCTTAGAA
AATGAACAAGATTATCAAAATAGATTGTCAAatgtttggaaatatttttt
gttgactTTGACAGTTGTGAACCCGTTTATAATCAattatttcttcttta
aaaGACGTTGAACCATTGTGTTTTTGTTCAGCTGTTTACACTCTATGCAT
ATGCACGATATTACTTCAAACCTGCTTTGACCCAATCAAATTTTACCAGA
CTCATTGATTCACTATAGCATCATCCTGCGGCGTTCTAGCTTTTTCATCA
AGGCTTGAAATCGgaatttctggaaatttgatGTTGATGGATGTTTAAGT
CTTTGTTTTCCCATCTTGGCAACTTCTTGTTcttgaattgaaaattgata
TGGATGAGTAAATTTTAATTGCAGATTTAGTgtttattaaattaaaattt
gaagtttATTA
Run BLAST on NCBI

protein sequence of TCONS_00000246-protein

>TCONS_00000246-protein ID=TCONS_00000246-protein|Name=TCONS_00000246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MEGENSQMDDRSMMFSKDGKSSEMTIPERIVLSAGYDGDDHNEPSRSPFR
NGAPNFDDTPIVNPEDVLGGMKTPPSVLTIDHGPNTFGTPNWHTEGDGAD
DSESDKKNYKYKFNRAPTDDQDDDFSYGSVPAERSVVIAGQEDYLHHHVP
FDDPRAMQQWYTSMQRRLTILENEQDYQNRLSNVWKYFLLTLTVVNPFII
NYFFFKRR
Run BLAST on NCBI

transcript from alignment at sc0000001:2182870..2184959-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000246 ID=TCONS_00000246|Name=TCONS_00000246|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at sc0000001:2182870..2184959- (Clytia hemisphaerica)
TACTGAGAGTTTGTATGCTATGAGAGGTCATTATAAAAAAGATGTAAATC
ACACAGTAGTATAACACTAAATTTCAGGAAATTATAATAATAACAAATCA
TGAAGTAACAATTTCATCAACGAAGACCTACACTATGGAAGGGGAGAATA
GCCAAATGGATGATCGATCAATGATGTTTTCTAAAGATGGCAAATCTTCT
GAAATGACTATCCCTGAAAGAATAGGTAATTTATTTTCGATTTGTTACTT
TACAGGGAATTAAAAATAAAATCAAAAACTTGAGACAATAACAAGACTAC
TTGGGGAAGTTGATAAAATCTCAGACATCATATCGTTTTGTAATGTAATG
ACACCCAAAAAACCTAAAAATCTTTTTAGTGTCATGTGACACTAGAGTTG
AGTAGAATACCAAAAAGGTGGGATCCAGAAAAAAATTTACAAAATGTTTT
TGTATGTTTGCACTAAAATTTTACTTTTTGAATCTTCTCCAGAATTTTTC
TTAATTTTTCATAAAAAGGTTTTTAAAATTTTTGTATTTGAAGAAAATTT
TGTCACGATGCTCCCAAAAATTAAAATATCACTACTCTAAAATTGGGTGT
GGTGGTAGACGAAAAAACCCTTTTAGTACATGTATATCTGAGATTTCAGT
AACCCCCCCCCCCCCCTGAGACTGCCAAAATGTTCATACAAGTTGTTGAG
TTTTCTTTTTTTTTTTTTCAAGTTCTTTCTGCTGGTTATGATGGTGATGA
TCACAACGAACCATCCAGAAGTCCATTCCGGAATGGCGCACCCAATTTTG
ATGACACACCTATTGTCAATCCTGAGGATGTACTTGGAGGCATGAAAACT
CCACCGTCTGTTTTGACTATTGACCATGGTCCAAATACATTTGGGTAACA
TTAATGTTTTTAGGGGCAGAGTGAGAGGTGGTAGTCTGTACCAAGGCTCA
AAATAACAATCGTATCAAGGCTCAAAATATGATTTTAATCAATATGTAAC
AGACAATTGAAATTTAGATCTTTTGGGCCGAGAGCTGCCGAGAGAGTTCA
ATTGTTTAGAGATAATTATTTATTTTAGGGATATATCCTAATTTCTAGTT
CTGTCGACTTAAAAACTGTTTATTGTTTGTTTCTAGAAGTATTAATCTCT
TGCCTCTGCTTGCCTTGGGTTACAAATTCTTTTACATACATTTTGTTTTT
TAGTGCCTGATAATACATTAATCATGAATATACTTCACATTTATGGCTTT
TAGGATTTTTGTCCTATCCAAGAAATATCGAGAACTGATGGGTGACCTTT
TGCCTTATGTTTGTGTGAAGCAAGAGCAGCTAAAATGTTTTACTTGAAAA
AGAGATTGGAAGAAGCCATTTAGACTAGTCAAATTGTTTTATTTTCATCC
AATTTTGCTCTCTACAAATTTTTCAGTACACCAAATTGGCATACAGAGGG
CGATGGAGCTGATGATTCAGAGTCTGACAAGAAAAATTACAAATACAAAT
TCAACCGTGCTCCTACCGATGACCAAGACGATGATTTTAGTTATGGTAGT
GTACCTGCTGAACGATCGGTTGTCATTGCTGGTCAGGAGGACTACCTTCA
TCACCACGTGCCATTTGACGATCCCAGGGCCATGCAACAATGGTATACAA
GCATGCAACGCAGGCTTACCATCTTAGAAAATGAACAAGATTATCAAAAT
AGATTGTCAAATGTTTGGAAATATTTTTTGTTGACTTTGACAGTTGTGAA
CCCGTTTATAATCAATTATTTCTTCTTTAAAAGACGTTGAACCATTGTGT
TTTTGTTCAGCTGTTTACACTCTATGCATATGCACGATATTACTTCAAAC
CTGCTTTGACCCAATCAAATTTTACCAGACTCATTGATTCACTATAGCAT
CATCCTGCGGCGTTCTAGCTTTTTCATCAAGGCTTGAAATCGGAATTTCT
GGAAATTTGATGTTGATGGATGTTTAAGTCTTTGTTTTCCCATCTTGGCA
ACTTCTTGTTCTTGAATTGAAAATTGATATGGATGAGTAAATTTTAATTG
CAGATTTAGTGTTTATTAAATTAAAATTTGAAGTTTATTA

Coding sequence (CDS) from alignment at sc0000001:2182870..2184959-

>TCONS_00000246 ID=TCONS_00000246|Name=TCONS_00000246|organism=Clytia hemisphaerica|type=CDS|length=1881bp|location=Sequence derived from alignment at sc0000001:2182870..2184959- (Clytia hemisphaerica)
TACACCAAATTGGCATACAGAGGGCGATGGAGCTGATGATTCAGAGTCTG
ACAAGAAAAATTACAAATACAAATTCAACCGTGCTCCTACCGATGACCAA
GACGATGATTTTAGTTATGGTAGTGTACCTGCTGAACGATCGGTTGTCAT
TGCTGGTCAGGAGGACTACCTTCATCACCACGTGCCATTTGACGATCCCA
GGGCCATGCAACAATGGTATACAAGCATGCAACGCAGGCTTACCATCTTA
GAAAATGAACAAGATTATCAAAATAGATTGTCAAATGTTTGGAAATATTT
TTTGTTGACTTTGACAGTTGTGAACCCGTTTATAATCAATTATTTCTTCT
TTAAAAGACGTTGATTCTTTCTGCTGGTTATGATGGTGATGATCACAACG
AACCATCCAGAAGTCCATTCCGGAATGGCGCACCCAATTTTGATGACACA
CCTATTGTCAATCCTGAGGATGTACTTGGAGGCATGAAAACTCCACCGTC
TGTTTTGACTATTGACCATGGTCCAAATACATTTGGATGGAAGGGGAGAA
TAGCCAAATGGATGATCGATCAATGATGTTTTCTAAAGATGGCAAATCTT
CTGAAATGACTATCCCTGAAAGAATAGTACACCAAATTGGCATACAGAGG
GCGATGGAGCTGATGATTCAGAGTCTGACAAGAAAAATTACAAATACAAA
TTCAACCGTGCTCCTACCGATGACCAAGACGATGATTTTAGTTATGGTAG
TGTACCTGCTGAACGATCGGTTGTCATTGCTGGTCAGGAGGACTACCTTC
ATCACCACGTGCCATTTGACGATCCCAGGGCCATGCAACAATGGTATACA
AGCATGCAACGCAGGCTTACCATCTTAGAAAATGAACAAGATTATCAAAA
TAGATTGTCAAATGTTTGGAAATATTTTTTGTTGACTTTGACAGTTGTGA
ACCCGTTTATAATCAATTATTTCTTCTTTAAAAGACGTTGATTCTTTCTG
CTGGTTATGATGGTGATGATCACAACGAACCATCCAGAAGTCCATTCCGG
AATGGCGCACCCAATTTTGATGACACACCTATTGTCAATCCTGAGGATGT
ACTTGGAGGCATGAAAACTCCACCGTCTGTTTTGACTATTGACCATGGTC
CAAATACATTTGGATGGAAGGGGAGAATAGCCAAATGGATGATCGATCAA
TGATGTTTTCTAAAGATGGCAAATCTTCTGAAATGACTATCCCTGAAAGA
ATAGTACACCAAATTGGCATACAGAGGGCGATGGAGCTGATGATTCAGAG
TCTGACAAGAAAAATTACAAATACAAATTCAACCGTGCTCCTACCGATGA
CCAAGACGATGATTTTAGTTATGGTAGTGTACCTGCTGAACGATCGGTTG
TCATTGCTGGTCAGGAGGACTACCTTCATCACCACGTGCCATTTGACGAT
CCCAGGGCCATGCAACAATGGTATACAAGCATGCAACGCAGGCTTACCAT
CTTAGAAAATGAACAAGATTATCAAAATAGATTGTCAAATGTTTGGAAAT
ATTTTTTGTTGACTTTGACAGTTGTGAACCCGTTTATAATCAATTATTTC
TTCTTTAAAAGACGTTGATTCTTTCTGCTGGTTATGATGGTGATGATCAC
AACGAACCATCCAGAAGTCCATTCCGGAATGGCGCACCCAATTTTGATGA
CACACCTATTGTCAATCCTGAGGATGTACTTGGAGGCATGAAAACTCCAC
CGTCTGTTTTGACTATTGACCATGGTCCAAATACATTTGGATGGAAGGGG
AGAATAGCCAAATGGATGATCGATCAATGATGTTTTCTAAAGATGGCAAA
TCTTCTGAAATGACTATCCCTGAAAGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000134XLOC_000134Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000246-proteinTCONS_00000246-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000246-exon-sc0000001-1575043694:2184735..2184959TCONS_00000246-exon-sc0000001-1575043694:2184735..2184959Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1575043694:2184066..2184237TCONS_00000246-exon-sc0000001-1575043694:2184066..2184237Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1575043694:2182870..2183533TCONS_00000246-exon-sc0000001-1575043694:2182870..2183533Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1510915933:2184735..2184959TCONS_00000246-exon-sc0000001-1510915933:2184735..2184959Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1510915933:2184066..2184237TCONS_00000246-exon-sc0000001-1510915933:2184066..2184237Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1510915933:2182870..2183533TCONS_00000246-exon-sc0000001-1510915933:2182870..2183533Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1491911889:2184735..2184959TCONS_00000246-exon-sc0000001-1491911889:2184735..2184959Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1491911889:2184066..2184237TCONS_00000246-exon-sc0000001-1491911889:2184066..2184237Clytia hemisphaericaexon
TCONS_00000246-exon-sc0000001-1491911889:2182870..2183533TCONS_00000246-exon-sc0000001-1491911889:2182870..2183533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2182870..2184959 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
157.151	153.775	242.527	254.572	37.792	27.4232	54.9809	57.6372	68.9161	70.3686	59.8218	48.7812	45.9994	41.1848	52.4443	55.9509	74.5537	68.5974	39.5285	55.306	46.0177	44.4792	76.9159	72.3585	49.1337	46.6038	51.5019	43.2036	53.4277	54.1519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top