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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000270 ID=TCONS_00000270|Name=TCONS_00000270|organism=Clytia hemisphaerica|type=transcript|length=2569bpRun BLAST on NCBI protein sequence of TCONS_00000270-protein >TCONS_00000270-protein ID=TCONS_00000270-protein|Name=TCONS_00000270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=855bp FSGFILAQQKLYIQTMKTLRSRKKTPIPGRRHKPKDVYHPTAQKPPLYHLRun BLAST on NCBI transcript from alignment at sc0000001:2611662..2641241- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000270 ID=TCONS_00000270|Name=TCONS_00000270|organism=Clytia hemisphaerica|type=transcript|length=29580bp|location=Sequence derived from alignment at sc0000001:2611662..2641241- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:2611662..2641241- >TCONS_00000270 ID=TCONS_00000270|Name=TCONS_00000270|organism=Clytia hemisphaerica|type=CDS|length=23085bp|location=Sequence derived from alignment at sc0000001:2611662..2641241- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000270 vs. Swiss-Prot (Human)
Match: EMAL1 (Echinoderm microtubule-associated protein-like 1 OS=Homo sapiens GN=EML1 PE=1 SV=3) HSP 1 Score: 224.557 bits (571), Expect = 9.756e-62 Identity = 128/338 (37.87%), Postives = 191/338 (56.51%), Query Frame = 3
Query: 1563 LQLDWVYGYNGRNCRNNIVLLPSEELLYFVAKVVVIFNDQQQTQRFYAEHTDEIRSIAQHPSNLWQIATGQVSG--GDSGDMA-HVRIWDSKILHTLNVLEFDSMNLSVECLDFCSSNNGERLATVANGNGEWYLTVWDWEEGIKLSHSEPYEDHYAELDIQFDPFDSTSVVTCGKEHVFFWDVSQPDAVYRVGFFEDYSTPEYVTCCSFNHDGRLITGDSNGYIHVWDTHLKRTLSTVPTNHTGSIITLRVLSDFHVVTGGGADRKLTLVSLIDSVPTKAEFELPEHVGGVVSIVPLXXXXXXXXXXXXXLRLVVGTSCNSILAGSMTEAFECIVKG 2567
L+L+WVYGY GR+CRNN+ LLP+ E +YF+A VVV++N ++Q QR YA H D+++ +A HP + IATGQV+G D + HVRIWDS L+TL+V+ + +V C+ F SN G L V + N + L+VWDW++ KL+ + + A F P D+ +VTCGK H++FW + + G FE P++V C +F+ +G ITGDS+G I VW R V H G I L +L D +V+GGG DRK L+S + + E+PE G + ++ G +++GT+ N +L G+++ F I +G
Sbjct: 221 LKLEWVYGYRGRDCRNNLYLLPTGETVYFIASVVVLYNVEEQLQRHYAGHNDDVKCLAVHPDRI-TIATGQVAGTSKDGKQLPPHVRIWDSVTLNTLHVIGIGFFDRAVTCIAFSKSNGGTNLCAVDDSN-DHVLSVWDWQKEEKLADVKCSNE--AVFAADFHPTDTNIIVTCGKSHLYFWTLEGSSLNKKQGLFEKQEKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRISYAVQGAHEGGIFALCMLRDGTLVSGGGKDRK--LISWSGNYQKLRKTEIPEQFGPIRTVAEGKGDV-----------ILIGTTRNFVLQGTLSGDFTPITQG 541 The following BLAST results are available for this feature:
BLAST of TCONS_00000270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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