TCONS_00000334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000334
Unique NameTCONS_00000334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000334 ID=TCONS_00000334|Name=TCONS_00000334|organism=Clytia hemisphaerica|type=transcript|length=389bp
GGTAGAATAaaactgaaattcaaataaatattttaaatttcaagtccttg
aaaaccttgatcAATGCCATGAACATCATCTTCTGGTGCTGGATTTGCGG
GTTCCTCTGGTGCTGGATTTGCGGGTTCTTCTGGTGCTGGATTTGCGGGT
TCTTCTGGTGCTGGATTTACGGGTTCATTTGGTGCTGGATTTGCGCGATC
TTCTGGTACTGGATTTTCGGGTTCTTCTGGCACAGGAATTGCGGGTTCTT
CTACTGGACCAAAGGTTCCAGGTGGATGGAACGTAATTAAAGGATGATTT
TGTGGATCTCCACCATAATATTGGTTAAAATAACAATATTCGATCGTAAC
GTTTTCGTGATTATCCACAAAATCTGTCAGCGTGTCATA
Run BLAST on NCBI

protein sequence of TCONS_00000334-protein

>TCONS_00000334-protein ID=TCONS_00000334-protein|Name=TCONS_00000334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
YDTLTDFVDNHENVTIEYCYFNQYYGGDPQNHPLITFHPPGTFGPVEEPA
IPVPEEPENPVPEDRANPAPNEPVNPAPEEPANPAPEEPANPAPEEPANP
APEDDVHGIDQGFQGLEI
Run BLAST on NCBI

transcript from alignment at sc0000001:1373125..1373513

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000334 ID=TCONS_00000334|Name=TCONS_00000334|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at sc0000001:1373125..1373513 (Clytia hemisphaerica)
TATGACACGCTGACAGATTTTGTGGATAATCACGAAAACGTTACGATCGA
ATATTGTTATTTTAACCAATATTATGGTGGAGATCCACAAAATCATCCTT
TAATTACGTTCCATCCACCTGGAACCTTTGGTCCAGTAGAAGAACCCGCA
ATTCCTGTGCCAGAAGAACCCGAAAATCCAGTACCAGAAGATCGCGCAAA
TCCAGCACCAAATGAACCCGTAAATCCAGCACCAGAAGAACCCGCAAATC
CAGCACCAGAAGAACCCGCAAATCCAGCACCAGAGGAACCCGCAAATCCA
GCACCAGAAGATGATGTTCATGGCATTgatcaaggttttcaaggacttga
aatttaaaatatttatttgaatttcagtttTATTCTACC

Coding sequence (CDS) from alignment at sc0000001:1373125..1373513

>TCONS_00000334 ID=TCONS_00000334|Name=TCONS_00000334|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000001:1373125..1373513 (Clytia hemisphaerica)
TATGACACGCTGACAGATTTTGTGGATAATCACGAAAACGTTACGATCGA
ATATTGTTATTTTAACCAATATTATGGTGGAGATCCACAAAATCATCCTT
TAATTACGTTCCATCCACCTGGAACCTTTGGTCCAGTAGAAGAACCCGCA
ATTCCTGTGCCAGAAGAACCCGAAAATCCAGTACCAGAAGATCGCGCAAA
TCCAGCACCAAATGAACCCGTAAATCCAGCACCAGAAGAACCCGCAAATC
CAGCACCAGAAGAACCCGCAAATCCAGCACCAGAGGAACCCGCAAATCCA
GCACCAGAAGATGATGTTCATGGCATTgatcaaggttttcaaggacttga
aatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000208XLOC_000208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000334-exon-sc0000001-1491911889:1373125..1373513TCONS_00000334-exon-sc0000001-1491911889:1373125..1373513Clytia hemisphaericaexon
TCONS_00000334-exon-sc0000001-1510915933:1373125..1373513TCONS_00000334-exon-sc0000001-1510915933:1373125..1373513Clytia hemisphaericaexon
TCONS_00000334-exon-sc0000001-1575043694:1373125..1373513TCONS_00000334-exon-sc0000001-1575043694:1373125..1373513Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000334-proteinTCONS_00000334-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1373125..1373513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	8.91372	5.17302	0	0	1.18369	0.454966	16.1331	23.898	0.381132	1.39427	0	0	1.05808	1.5109	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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