|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000337 ID=TCONS_00000337|Name=TCONS_00000337|organism=Clytia hemisphaerica|type=transcript|length=1930bp
CTATGAAAAATACAGATGACTGTTGAAGACAGCACGAGAGATTCTAAATC
TATAGGAAATTGAATGATTGATAAAGAGTTGTGTTGTATCTGAGCTTATG
TTATGcagaattttttcgaaattaattTTTCTGAGGTTTTGTGAAGGGTT
TTACAAGACTGATGCTAGAGAATGAATTAGTTTGGTTGGATTGTGGTGaa
ctttgtttgttttgattgtgaATCAACCTAGGAAACGTACGAATATCCAA
AATGGCGGCTACCAAGAATTAtggttgtttttcatttgtttgtgATTATT
TCAAGAAATGTTTTCCATtcgtaaaaagtaaaaaatcatcTCCTACGCGA
ATACGATACGTCCCTCCGGCTCACCAACACGCGTCAAGGAAAACTAGTTC
TACCAGCGTCCAGCATCAAGAAAGAAGACGTCTATCAAGCAACGATTCAT
ACTCGGGACGAAAACATTCCAACAACGAATTACACCCAGGGCGGAAAATT
TCCAACAGTGAACTAAACGCAGGACGAAAACATTCAGGCAGCAAATCCCC
TAGTAGATCGCCGAATATATCACCGAATAGATCAAATAAATCTAGGAAAG
TATCCAGCGTCTCCAAAAAGCTTAGTGACGCTATTGATTTAGATGATACC
AGTCGTAAATCAAGATATGTAGCAAAAGTGTCAATTACAAATTCAGAAGT
CAATCCTGAACGATCACCAGTAAACaataaaatggcaaaaaatCACTGGA
AACGAGGTATGACTATCATTAAAGAACGCAAAGCGAATGttgaaaatgat
aaagaaaTGAAAGATATTGCATGAAAGGGTTTGGGAAGTTTGAACAGAAT
TTTAGCTAATTTATTGTTGGTTAGAATTTGATGAGTTTTATTGCCGACTT
GATCCGTCTTTCCGGTGAATTCACATGAAGTGAAcccgggggagggggca
ctcgatgtgaaaacgaccatacgttcggcccaaaatttggcttctaaaat
gggacccttacagtgcagtgaatttccatgaaaaatcatacccttacagt
gcacttttttaaaatttctcgCAATtgaattggccttttatcacaatttc
ctacccttacagggcagttcagtgcagttttgtaatttcctacccttaca
gtgcacaagccgaactatgaaaaacctatccttaagggccgaacgtctgg
taggtcatttaccttgagtgccccccccccccccggggaagtGAACCATA
AACACTTACATACCATTCAAAGGTGGAAcaaaaattagaataaaaaaatc
taaggggatcctgaaaaattaaaaacggtCAACATAGGtcgtaagttttt
tttcttctggaaTAGTCCATTACCAGACATCACTTCACCATCATCAAGAT
CAGACAATTGCATCTACCATTAACTAGAACTAATGATAAAACCTAGTTCa
ttatgatttataaattaTACGGATTccattggaactaattttcgcggtcg
agaaaaaagatcggaaaaattgtatttcgcgggttttaattttcgtggtt
ttgctttttttggtcaaatttctttttcattttcctagggattttgcGGG
TtaaaattttcgcagttttgCCAAAAAGCCGCGAAAAAAACGCTAAATTA
ATTcccacaaaaattagttccaataaagTAATGCTATACATTTGATTATT
TAAGTTTATGTATTAAAGGTTAAGCGATGATTTAAGAGGGCTCTACAAGG
TGAAGGTGatacaattttcagaaaaaaatatacacaatTTGCTTCACAGT
ACTTTCAGTTTCATGTTTAAAACAATGTGTTTGTGTTTATTTAAGTTtat
taatttacaatttttataaattagaaatattttaacgATTAATACAATTC
ATTGAAAACGTCAAATACTATCTATACAAC Run BLAST on NCBI protein sequence of TCONS_00000337-protein >TCONS_00000337-protein ID=TCONS_00000337-protein|Name=TCONS_00000337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MAATKNYGCFSFVCDYFKKCFPFVKSKKSSPTRIRYVPPAHQHASRKTSS
TSVQHQERRRLSSNDSYSGRKHSNNELHPGRKISNSELNAGRKHSGSKSP
SRSPNISPNRSNKSRKVSSVSKKLSDAIDLDDTSRKSRYVAKVSITNSEV
NPERSPVNNKMAKNHWKRGMTIIKERKANVENDKEMKDIA Run BLAST on NCBI transcript from alignment at sc0000001:1414435..1416364 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000337 ID=TCONS_00000337|Name=TCONS_00000337|organism=Clytia hemisphaerica|type=transcript|length=1930bp|location=Sequence derived from alignment at sc0000001:1414435..1416364 (Clytia hemisphaerica)
GTTGTATAGATAGTATTTGACGTTTTCAATGAATTGTATTAATcgttaaa
atatttctaatttataaaaattgtaaattaataAACTTAAATAAACACAA
ACACATTGTTTTAAACATGAAACTGAAAGTACTGTGAAGCAAattgtgta
tatttttttctgaaaattgtatCACCTTCACCTTGTAGAGCCCTCTTAAA
TCATCGCTTAACCTTTAATACATAAACTTAAATAATCAAATGTATAGCAT
TActttattggaactaatttttgtgggAATTAATTTAGCGTTTTTTTCGC
GGCTTTTTGGcaaaactgcgaaaattttaACCCgcaaaatccctaggaaa
atgaaaaagaaatttgaccaaaaaaagcaaaaccacgaaaattaaaaccc
gcgaaatacaatttttccgatcttttttctcgaccgcgaaaattagttcc
aatggAATCCGTAtaatttataaatcataatGAACTAGGTTTTATCATTA
GTTCTAGTTAATGGTAGATGCAATTGTCTGATCTTGATGATGGTGAAGTG
ATGTCTGGTAATGGACTAttccagaagaaaaaaaacttacgaCCTATGTT
Gaccgtttttaatttttcaggatccccttagatttttttattctaatttt
tgTTCCACCTTTGAATGGTATGTAAGTGTTTATGGTTCacttccccgggg
ggggggggggcactcaaggtaaatgacctaccagacgttcggcccttaag
gataggtttttcatagttcggcttgtgcactgtaagggtaggaaattaca
aaactgcactgaactgccctgtaagggtaggaaattgtgataaaaggcca
attcaATTGcgagaaattttaaaaaagtgcactgtaagggtatgattttt
catggaaattcactgcactgtaagggtcccattttagaagccaaattttg
ggccgaacgtatggtcgttttcacatcgagtgccccctcccccgggTTCA
CTTCATGTGAATTCACCGGAAAGACGGATCAAGTCGGCAATAAAACTCAT
CAAATTCTAACCAACAATAAATTAGCTAAAATTCTGTTCAAACTTCCCAA
ACCCTTTCATGCAATATCTTTCAtttctttatcattttcaaCATTCGCTT
TGCGTTCTTTAATGATAGTCATACCTCGTTTCCAGTGattttttgccatt
ttattGTTTACTGGTGATCGTTCAGGATTGACTTCTGAATTTGTAATTGA
CACTTTTGCTACATATCTTGATTTACGACTGGTATCATCTAAATCAATAG
CGTCACTAAGCTTTTTGGAGACGCTGGATACTTTCCTAGATTTATTTGAT
CTATTCGGTGATATATTCGGCGATCTACTAGGGGATTTGCTGCCTGAATG
TTTTCGTCCTGCGTTTAGTTCACTGTTGGAAATTTTCCGCCCTGGGTGTA
ATTCGTTGTTGGAATGTTTTCGTCCCGAGTATGAATCGTTGCTTGATAGA
CGTCTTCTTTCTTGATGCTGGACGCTGGTAGAACTAGTTTTCCTTGACGC
GTGTTGGTGAGCCGGAGGGACGTATCGTATTCGCGTAGGAgatgattttt
tactttttacgaATGGAAAACATTTCTTGAAATAATcacaaacaaatgaa
aaacaaccaTAATTCTTGGTAGCCGCCATTTTGGATATTCGTACGTTTCC
TAGGTTGATtcacaatcaaaacaaacaaagttCACCACAATCCAACCAAA
CTAATTCATTCTCTAGCATCAGTCTTGTAAAACCCTTCACAAAACCTCAG
AAAaattaatttcgaaaaaattctgCATAACATAAGCTCAGATACAACAC
AACTCTTTATCAATCATTCAATTTCCTATAGATTTAGAATCTCTCGTGCT
GTCTTCAACAGTCATCTGTATTTTTCATAG Coding sequence (CDS) from alignment at sc0000001:1414435..1416364 >TCONS_00000337 ID=TCONS_00000337|Name=TCONS_00000337|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000001:1414435..1416364 (Clytia hemisphaerica)
TCATGCAATATCTTTCAtttctttatcattttcaaCATTCGCTTTGCGTT
CTTTAATGATAGTCATACCTCGTTTCCAGTGattttttgccattttattG
TTTACTGGTGATCGTTCAGGATTGACTTCTGAATTTGTAATTGACACTTT
TGCTACATATCTTGATTTACGACTGGTATCATCTAAATCAATAGCGTCAC
TAAGCTTTTTGGAGACGCTGGATACTTTCCTAGATTTATTTGATCTATTC
GGTGATATATTCGGCGATCTACTAGGGGATTTGCTGCCTGAATGTTTTCG
TCCTGCGTTTAGTTCACTGTTGGAAATTTTCCGCCCTGGGTGTAATTCGT
TGTTGGAATGTTTTCGTCCCGAGTATGAATCGTTGCTTGATAGACGTCTT
CTTTCTTGATGCTGGACGCTGGTAGAACTAGTTTTCCTTGACGCGTGTTG
GTGAGCCGGAGGGACGTATCGTATTCGCGTAGGAgatgattttttacttt
ttacgaATGGAAAACATTTCTTGAAATAATcacaaacaaatgaaaaacaa
ccaTAATTCTTGGTAGCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000337-exon-sc0000001-1491911889:1414435..1416364 | TCONS_00000337-exon-sc0000001-1491911889:1414435..1416364 | Clytia hemisphaerica | exon |
| TCONS_00000337-exon-sc0000001-1510915933:1414435..1416364 | TCONS_00000337-exon-sc0000001-1510915933:1414435..1416364 | Clytia hemisphaerica | exon |
| TCONS_00000337-exon-sc0000001-1575043694:1414435..1416364 | TCONS_00000337-exon-sc0000001-1575043694:1414435..1416364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1414435..1416364 . |
Blast
The following BLAST results are available for this feature:
|
