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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000338 ID=TCONS_00000338|Name=TCONS_00000338|organism=Clytia hemisphaerica|type=transcript|length=1245bp
tatatatatctttCTCTTGTTCTTTTAGATTAGCATTCATAGTTATAAAT
AAAACATATGAATAAGATATTCTTCATGCTAATCTTACACTGATATGGTT
GAGTTGCAATGTCCCGTACCTGGTTGTGAGTACCAAACACCAGCGGGCTC
ATCTGAAACTGTGGCGTGCACCTTGCTGTCGGCCCACAGTACAATCCACA
TGGGTGGTGGCCGTGCCCGCATCCCTTCTGGACCGAAATTGGATAGACCG
AAAGTCGATAGTGGATTGAACCAGGAAGAATGGAACCTATTTCTTCGTCG
TTGGGAAGCATTTGTTATTGGATCTGGCCTCGAAGCAAATAACTGTTCCA
CTCAGCTGTTCCAATGTGCGAGCCAATCTCTTGGGGATAGTTTACTGCGT
TCGAATCCTGGAATCATGAATCGCCCTACCAACGAGCTATTAGAATCAAT
GAAATCATTAGCTGTCGTAGCTGTTGCTACCTGTGTTACGAGAACTGAAC
TTATGAACATGCATCAGGAACGCGACGAACAATTTCGCATTTTCTCCTCA
CGGGTTAGAGGAAAGGCAGAGACCTGTAATTACAAAACTAGATGTACTTG
CGATAACACAATTGACTTTACAGACTCTATTATAAGAGATGTTCTAATTG
CGGGTATCGAAGATTCTGACATCAGACGGGAAGTTCTTGGTATTGCAAAT
ATTCTCGAAACTTCTATAAATGACATTATTGCCCTTGTAGAGAGCAAGGA
GATGGCACGGGATGCACTGCCATCCTCAGTCGGGAACGTGTCCTCGTCAA
CATATCGTCGACATAAGCCAAAGCAGACTGAGGCTACTCACGCTGAAACA
CCGATTCCATGTCCTGGTTCTAGAAAGCCGTACCTGCGTTTCACGGAGGG
CAGGACAGGACGAAACAGAAAGCCACACAAGATGTGTATCGACTGCTATC
GAGCCAAACGTCGCCAAGAGAGATCTGACACCAACCAACAGCCTcaactt
ataaataaaacataTGAATAAGATATTCTTCAGGAACCTTAATCCATAAC
TTGCGTTCCTCGTGCTTGTTAAAATTTCTGATACTTCACTGTATGAAACT
TTAAATCTCTTTTTCGAGCCACATTTCAATGACTTTTTATAGGACGATTA
CCttttagtccgggagccaaacccaaaaaatagcattttgcttaacccaa
gattctacaggataaactatacatttttggaatcctcaactatcc Run BLAST on NCBI protein sequence of TCONS_00000338-protein >TCONS_00000338-protein ID=TCONS_00000338-protein|Name=TCONS_00000338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MVELQCPVPGCEYQTPAGSSETVACTLLSAHSTIHMGGGRARIPSGPKLD
RPKVDSGLNQEEWNLFLRRWEAFVIGSGLEANNCSTQLFQCASQSLGDSL
LRSNPGIMNRPTNELLESMKSLAVVAVATCVTRTELMNMHQERDEQFRIF
SSRVRGKAETCNYKTRCTCDNTIDFTDSIIRDVLIAGIEDSDIRREVLGI
ANILETSINDIIALVESKEMARDALPSSVGNVSSSTYRRHKPKQTEATHA
ETPIPCPGSRKPYLRFTEGRTGRNRKPHKMCIDCYRAKRRQERSDTNQQP
QLINKTYE Run BLAST on NCBI transcript from alignment at sc0000001:1424428..1425672 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000338 ID=TCONS_00000338|Name=TCONS_00000338|organism=Clytia hemisphaerica|type=transcript|length=1245bp|location=Sequence derived from alignment at sc0000001:1424428..1425672 (Clytia hemisphaerica)
ggatagttgaggattccaaaaatgtatagtttatcctgtagaatcttggg
ttaagcaaaatgctattttttgggtttggctcccggactaaaaGGTAATC
GTCCTATAAAAAGTCATTGAAATGTGGCTCGAAAAAGAGATTTAAAGTTT
CATACAGTGAAGTATCAGAAATTTTAACAAGCACGAGGAACGCAAGTTAT
GGATTAAGGTTCCTGAAGAATATCTTATTCAtatgttttatttataagtt
gAGGCTGTTGGTTGGTGTCAGATCTCTCTTGGCGACGTTTGGCTCGATAG
CAGTCGATACACATCTTGTGTGGCTTTCTGTTTCGTCCTGTCCTGCCCTC
CGTGAAACGCAGGTACGGCTTTCTAGAACCAGGACATGGAATCGGTGTTT
CAGCGTGAGTAGCCTCAGTCTGCTTTGGCTTATGTCGACGATATGTTGAC
GAGGACACGTTCCCGACTGAGGATGGCAGTGCATCCCGTGCCATCTCCTT
GCTCTCTACAAGGGCAATAATGTCATTTATAGAAGTTTCGAGAATATTTG
CAATACCAAGAACTTCCCGTCTGATGTCAGAATCTTCGATACCCGCAATT
AGAACATCTCTTATAATAGAGTCTGTAAAGTCAATTGTGTTATCGCAAGT
ACATCTAGTTTTGTAATTACAGGTCTCTGCCTTTCCTCTAACCCGTGAGG
AGAAAATGCGAAATTGTTCGTCGCGTTCCTGATGCATGTTCATAAGTTCA
GTTCTCGTAACACAGGTAGCAACAGCTACGACAGCTAATGATTTCATTGA
TTCTAATAGCTCGTTGGTAGGGCGATTCATGATTCCAGGATTCGAACGCA
GTAAACTATCCCCAAGAGATTGGCTCGCACATTGGAACAGCTGAGTGGAA
CAGTTATTTGCTTCGAGGCCAGATCCAATAACAAATGCTTCCCAACGACG
AAGAAATAGGTTCCATTCTTCCTGGTTCAATCCACTATCGACTTTCGGTC
TATCCAATTTCGGTCCAGAAGGGATGCGGGCACGGCCACCACCCATGTGG
ATTGTACTGTGGGCCGACAGCAAGGTGCACGCCACAGTTTCAGATGAGCC
CGCTGGTGTTTGGTACTCACAACCAGGTACGGGACATTGCAACTCAACCA
TATCAGTGTAAGATTAGCATGAAGAATATCTTATTCATATGTTTTATTTA
TAACTATGAATGCTAATCTAAAAGAACAAGAGaaagatatatata Coding sequence (CDS) from alignment at sc0000001:1424428..1425672 >TCONS_00000338 ID=TCONS_00000338|Name=TCONS_00000338|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000001:1424428..1425672 (Clytia hemisphaerica)
TTATTCAtatgttttatttataagttgAGGCTGTTGGTTGGTGTCAGATC
TCTCTTGGCGACGTTTGGCTCGATAGCAGTCGATACACATCTTGTGTGGC
TTTCTGTTTCGTCCTGTCCTGCCCTCCGTGAAACGCAGGTACGGCTTTCT
AGAACCAGGACATGGAATCGGTGTTTCAGCGTGAGTAGCCTCAGTCTGCT
TTGGCTTATGTCGACGATATGTTGACGAGGACACGTTCCCGACTGAGGAT
GGCAGTGCATCCCGTGCCATCTCCTTGCTCTCTACAAGGGCAATAATGTC
ATTTATAGAAGTTTCGAGAATATTTGCAATACCAAGAACTTCCCGTCTGA
TGTCAGAATCTTCGATACCCGCAATTAGAACATCTCTTATAATAGAGTCT
GTAAAGTCAATTGTGTTATCGCAAGTACATCTAGTTTTGTAATTACAGGT
CTCTGCCTTTCCTCTAACCCGTGAGGAGAAAATGCGAAATTGTTCGTCGC
GTTCCTGATGCATGTTCATAAGTTCAGTTCTCGTAACACAGGTAGCAACA
GCTACGACAGCTAATGATTTCATTGATTCTAATAGCTCGTTGGTAGGGCG
ATTCATGATTCCAGGATTCGAACGCAGTAAACTATCCCCAAGAGATTGGC
TCGCACATTGGAACAGCTGAGTGGAACAGTTATTTGCTTCGAGGCCAGAT
CCAATAACAAATGCTTCCCAACGACGAAGAAATAGGTTCCATTCTTCCTG
GTTCAATCCACTATCGACTTTCGGTCTATCCAATTTCGGTCCAGAAGGGA
TGCGGGCACGGCCACCACCCATGTGGATTGTACTGTGGGCCGACAGCAAG
GTGCACGCCACAGTTTCAGATGAGCCCGCTGGTGTTTGGTACTCACAACC
AGGTACGGGACATTGCAACTCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000338-exon-sc0000001-1491911889:1424428..1425672 | TCONS_00000338-exon-sc0000001-1491911889:1424428..1425672 | Clytia hemisphaerica | exon |
| TCONS_00000338-exon-sc0000001-1510915933:1424428..1425672 | TCONS_00000338-exon-sc0000001-1510915933:1424428..1425672 | Clytia hemisphaerica | exon |
| TCONS_00000338-exon-sc0000001-1575043694:1424428..1425672 | TCONS_00000338-exon-sc0000001-1575043694:1424428..1425672 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1424428..1425672 . |
Blast
The following BLAST results are available for this feature:
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