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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000356 ID=TCONS_00000356|Name=TCONS_00000356|organism=Clytia hemisphaerica|type=transcript|length=1067bp
CAAAGATCAAATCTCTCTCGATGTGCAAGAACTCAACTTCGCCAAAAAAT
CACGAGGTCGCAAACCAACACTTGTATCTACGGTACCTGAGAACCTAACT
CGACGACAATGCGTGGCCAAGGTAGCTGAACTCTACGACATCACTGGTTT
AATCACACCGATTGTTGCCACCATGAAACTAGATCTTCACGACCTTGTCA
CTCGGAAATTGGATTGGGATGATGCTCTTCCCGATAACATCCGGACCATT
TGGCTTGACCATTTCGATATGATGAATGAAATCAAACAAATCAAGTATCC
AAGAGCCGTTGTACCAGAAGATGCTGCAAGTTTAGACATTCAGACGCTTG
ACTTTGGGGATGCAAGCAAAAGCCTCATTTGTGTCGCTATATATGTTCGA
TTCATGAAGAAGGATGGATCATTCTCCTGTCAATTCATCTTTGGTAGATC
CAAACTCATTTCAGATGAATACACTCAACCACGTGCAGAGCTATATGCAG
CGATGATCAATGCACACTCTGGTCATACAATCAAACAAGCCCTGAAGGAT
AAACACAAGTCGAGCATCAAATTTACAGATTCTCAGATCAGTCTCTATTG
GATTTGTAACCTTCACCTGAATTTAAAGCAATGGACAAGAAACAGAGTAT
CTGAAGTCCACAGATTTACAGACACATCCCAATGGAAATATGTCAGATCA
GAGGACATGATTGCAGACTTGGGCACTAGAAGATGCACAGCCATCCAAGA
TGTCGACCAACATTCAAAGTGGATCAACGGATATGAATGGATGAGAAGCA
ACCCTTCGGACTTCCCAGCCAAGACTACTACTGACATCTCACTGACAGCG
CAAGAGAAACAACATCTTAAGAAAGAGTCAAGAGAAGAAGTACACAAGGA
AGGTATCGAATGCTACATATCCTCAACCAAGTCGATGATTCCAGAAGCCG
TTTCAAATCACTACAAATACTCAAATTATTTGATCGACCCCAATTGGAGA
AATTTCAACCATGTAATCAGAGTGATGGCTTACGTACTTAAATTCATCAA
tagcttcaaaaaatttc Run BLAST on NCBI protein sequence of TCONS_00000356-protein >TCONS_00000356-protein ID=TCONS_00000356-protein|Name=TCONS_00000356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
KDQISLDVQELNFAKKSRGRKPTLVSTVPENLTRRQCVAKVAELYDITGL
ITPIVATMKLDLHDLVTRKLDWDDALPDNIRTIWLDHFDMMNEIKQIKYP
RAVVPEDAASLDIQTLDFGDASKSLICVAIYVRFMKKDGSFSCQFIFGRS
KLISDEYTQPRAELYAAMINAHSGHTIKQALKDKHKSSIKFTDSQISLYW
ICNLHLNLKQWTRNRVSEVHRFTDTSQWKYVRSEDMIADLGTRRCTAIQD
VDQHSKWINGYEWMRSNPSDFPAKTTTDISLTAQEKQHLKKESREEVHKE
GIECYISSTKSMIPEAVSNHYKYSNYLIDPNWRNFNHVIRVMAYVLKFIN
SFKKF Run BLAST on NCBI transcript from alignment at sc0000001:1858761..1859827 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000356 ID=TCONS_00000356|Name=TCONS_00000356|organism=Clytia hemisphaerica|type=transcript|length=1067bp|location=Sequence derived from alignment at sc0000001:1858761..1859827 (Clytia hemisphaerica)
gaaattttttgaagctaTTGATGAATTTAAGTACGTAAGCCATCACTCTG
ATTACATGGTTGAAATTTCTCCAATTGGGGTCGATCAAATAATTTGAGTA
TTTGTAGTGATTTGAAACGGCTTCTGGAATCATCGACTTGGTTGAGGATA
TGTAGCATTCGATACCTTCCTTGTGTACTTCTTCTCTTGACTCTTTCTTA
AGATGTTGTTTCTCTTGCGCTGTCAGTGAGATGTCAGTAGTAGTCTTGGC
TGGGAAGTCCGAAGGGTTGCTTCTCATCCATTCATATCCGTTGATCCACT
TTGAATGTTGGTCGACATCTTGGATGGCTGTGCATCTTCTAGTGCCCAAG
TCTGCAATCATGTCCTCTGATCTGACATATTTCCATTGGGATGTGTCTGT
AAATCTGTGGACTTCAGATACTCTGTTTCTTGTCCATTGCTTTAAATTCA
GGTGAAGGTTACAAATCCAATAGAGACTGATCTGAGAATCTGTAAATTTG
ATGCTCGACTTGTGTTTATCCTTCAGGGCTTGTTTGATTGTATGACCAGA
GTGTGCATTGATCATCGCTGCATATAGCTCTGCACGTGGTTGAGTGTATT
CATCTGAAATGAGTTTGGATCTACCAAAGATGAATTGACAGGAGAATGAT
CCATCCTTCTTCATGAATCGAACATATATAGCGACACAAATGAGGCTTTT
GCTTGCATCCCCAAAGTCAAGCGTCTGAATGTCTAAACTTGCAGCATCTT
CTGGTACAACGGCTCTTGGATACTTGATTTGTTTGATTTCATTCATCATA
TCGAAATGGTCAAGCCAAATGGTCCGGATGTTATCGGGAAGAGCATCATC
CCAATCCAATTTCCGAGTGACAAGGTCGTGAAGATCTAGTTTCATGGTGG
CAACAATCGGTGTGATTAAACCAGTGATGTCGTAGAGTTCAGCTACCTTG
GCCACGCATTGTCGTCGAGTTAGGTTCTCAGGTACCGTAGATACAAGTGT
TGGTTTGCGACCTCGTGATTTTTTGGCGAAGTTGAGTTCTTGCACATCGA
GAGAGATTTGATCTTTG Coding sequence (CDS) from alignment at sc0000001:1858761..1859827 >TCONS_00000356 ID=TCONS_00000356|Name=TCONS_00000356|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at sc0000001:1858761..1859827 (Clytia hemisphaerica)
aaattttttgaagctaTTGATGAATTTAAGTACGTAAGCCATCACTCTGA
TTACATGGTTGAAATTTCTCCAATTGGGGTCGATCAAATAATTTGAGTAT
TTGTAGTGATTTGAAACGGCTTCTGGAATCATCGACTTGGTTGAGGATAT
GTAGCATTCGATACCTTCCTTGTGTACTTCTTCTCTTGACTCTTTCTTAA
GATGTTGTTTCTCTTGCGCTGTCAGTGAGATGTCAGTAGTAGTCTTGGCT
GGGAAGTCCGAAGGGTTGCTTCTCATCCATTCATATCCGTTGATCCACTT
TGAATGTTGGTCGACATCTTGGATGGCTGTGCATCTTCTAGTGCCCAAGT
CTGCAATCATGTCCTCTGATCTGACATATTTCCATTGGGATGTGTCTGTA
AATCTGTGGACTTCAGATACTCTGTTTCTTGTCCATTGCTTTAAATTCAG
GTGAAGGTTACAAATCCAATAGAGACTGATCTGAGAATCTGTAAATTTGA
TGCTCGACTTGTGTTTATCCTTCAGGGCTTGTTTGATTGTATGACCAGAG
TGTGCATTGATCATCGCTGCATATAGCTCTGCACGTGGTTGAGTGTATTC
ATCTGAAATGAGTTTGGATCTACCAAAGATGAATTGACAGGAGAATGATC
CATCCTTCTTCATGAATCGAACATATATAGCGACACAAATGAGGCTTTTG
CTTGCATCCCCAAAGTCAAGCGTCTGAATGTCTAAACTTGCAGCATCTTC
TGGTACAACGGCTCTTGGATACTTGATTTGTTTGATTTCATTCATCATAT
CGAAATGGTCAAGCCAAATGGTCCGGATGTTATCGGGAAGAGCATCATCC
CAATCCAATTTCCGAGTGACAAGGTCGTGAAGATCTAGTTTCATGGTGGC
AACAATCGGTGTGATTAAACCAGTGATGTCGTAGAGTTCAGCTACCTTGG
CCACGCATTGTCGTCGAGTTAGGTTCTCAGGTACCGTAGATACAAGTGTT
GGTTTGCGACCTCGTGATTTTTTGGCGAAGTTGAGTTCTTGCACATCGAG
AGAGATTTGATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000356-exon-sc0000001-1491911889:1858761..1859827 | TCONS_00000356-exon-sc0000001-1491911889:1858761..1859827 | Clytia hemisphaerica | exon |
| TCONS_00000356-exon-sc0000001-1510915933:1858761..1859827 | TCONS_00000356-exon-sc0000001-1510915933:1858761..1859827 | Clytia hemisphaerica | exon |
| TCONS_00000356-exon-sc0000001-1575043694:1858761..1859827 | TCONS_00000356-exon-sc0000001-1575043694:1858761..1859827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1858761..1859827 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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