|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000394 ID=TCONS_00000394|Name=TCONS_00000394|organism=Clytia hemisphaerica|type=transcript|length=1438bp
GAAAAACATCTGGGGGTGTTGTAGAGAGTTGAGAGTGAAAAAAGATCTCA
CACGAGCGCGAACGCAGGATGACGTGGCCCTATAATCCAGTACCATCCTA
TCATGTACCACACCATGGACCATATAACTTCCCTGGACATTACCCCCTGA
ATTATTACGgATATCCAAGAAAGCAAAGACGTGAGCGTACAACATTTACC
AAAGGACAATTAGAAATATTGGAGAATTTATTCCGTGAGACGAAGTACCC
TGATGTTTTTATGCGCGAAGACGTAGCAAGAAGAATCAGCCTACCTGAAT
CTAGAGTCCAGGTTTGGTTTAAAAACAGGCGTGCAAAACACCGACAGAAA
TCCAAGAAATCATCATCTACATCACAAAGTACGAACTCAGATTCCAGTCC
TGAACGAGGAGACCGTTCGCCTGCCCTCCAATCTCCTAACTCTGATAAAT
CACACAACATTGACCCACCACCACTTTCGTCACCGGCAAAACCGAACCAT
AGCAACAGCAACCATAGCAACAGCAACCATAGCAGCAGtaataacaacaa
taataatgGCAGTAATGGAAACACAACATCAGAATCAACAAACGAGTTTA
ATAACAACAAATCCCAATGCACATTCAATAACAACCATTTACCTCAAAAT
CCATTAACACCAACCACGCCTACAAACACGGGCGGATATCCGCCACTCGA
AAGAGCACCCTCGTATCCTAACTACATCCCTCAATCTTTCCAGCAATCGC
AAAGAGGATATGGTGGACAATCAGATTCGTCATACTGTCCATATTCACCG
ACCAGCGGTCGTCAATCTTTCTACCAATCCTCACATCTGCACCCACATTC
AACTAGCGATTACCAGCCATGTGCAGTAGATGTTCATGGCTCTACACCTT
TAAGTCCTGGTTGGAATACATATGGTCCGAACATATGAGACTAGTTTAAA
TAACTACATTTAAGTGATTCACCAAAGAATAGtgatgtcagatctaacaa
gtTTCCCACAATCTAACAAGATCGAAGTGACACAAACTAAACCCTAATTG
AAAATAAGACAGAGACATGTCTCTTTAAGAAATGGTTAGTGGTTTCCGCA
TATTCAATTGTTGATAAAACAGTAGAAGAAGTAATTGGTAGCGAACCAAC
GACAGGATAACTCTTAATTCCGAAATTCTGTATGCGCGGCAAGGGAAAAA
GGAAACTTAATTTATTCAGGTCATATTGGCTTTTAATTTAGTTTGAAACA
AGATTTCTCATCTCGCCTATCAgttttctgttttcaaatttgaaatgtaa
TAAATTGTAAAGAGCTGAAACTGCAGAAAATTTAGAACGatacaatttct
ttttttaaagatatttttttgaacttttagaaatttttcgtttttccaaT
AATTCTAAGACAAACGAATATATTATTGTGTATAGCTg Run BLAST on NCBI transcript from alignment at sc0000002:19854..24246+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000394 ID=TCONS_00000394|Name=TCONS_00000394|organism=Clytia hemisphaerica|type=transcript|length=4393bp|location=Sequence derived from alignment at sc0000002:19854..24246+ (Clytia hemisphaerica)
GAAAAACATCTGGGGGTGTTGTAGAGAGTTGAGAGTGAAAAAAGGTGCGT
AACAagattttcgaagatttttttgaTTAATCCAAGATAGTAACGACTTA
AACCGAtcagcgaaaaaaaaaaacgtttcacttcattataattttttaag
gttttgaaatAATTCATCGGACTAATATTATTGATGATCATTATAAGCTT
GGTATTTCTTTAAGtattttgttattcaaattcactacattttttttata
ttgtacaaacttcTTTTGGTTGGTAAAGGGAAAGGTCATCATTTTCGAGC
TTTGTTGAAACTCAGCAAAAAGGTTTTTGAGCCATcttataaaagttttt
gaacCGTAATAACATCGGCGCGATACTTTGGTGGAACTTATAAGTGAAAT
CGCTCACATTTTAGTGTGCTCGGAACTTACAATGTTAACTAGCTATGTAA
GTATACAATGAAGTCTTGAATTGAAAAAAGGCTTGCCAAAGACAGGGGCC
AcggctccactttgaaagtATTAGGGCCACATAATATACTGACTAAGGAG
ACGCCACTGGATGGGGCCGACGGGTGAAAAGCAATTTTTAGCTCTTTTAG
ATTACCTAAAACAGACCTGTTTTAGGCGATCTGAAGGTTTAAGGTTATTA
AACAGAATTTGACTTGAttggtaaattttctttttgttttgaaaaaatgt
gccTCCCCCCCGCTGGCGCAGCGCCTGTAAAGACTACTATTGGTTAATGT
CAGAGGATGCTATCGTCTGTTAGAGGGACAGTTAACGCTGGGAAAACTTA
TAAGCGCGTAGTTTACTGTCGTAATGAGGGGTTACGGAAAGAATAGTGGC
GGAAAAGTTAGGAACAAACACTGCTAGCACAGTAAAAACCGTCATCAATG
TTCACCTTGTACCGGGCTTATCTTCGGCACTCAAATTAATCCCACTTTCT
AAATTATTTCCGTTTTAGTGATCTTGTCTAAGTTGATCTTTGCTTTAGAA
TTTTAGACAGTAAAGTACAGTAAGAACGGGAGTACAATACAAACacaata
ttcaatttcaaaatattatagtaaaagattttttcaagtgACTCTTCGAT
ACTGAATAAATTCAACTTACGCGACATTGAGAACGTTGGGTTACAAAAAG
ATTAGGTTAATGGGTCAAGGAGAAACACTCTTCCTCCAAAGCGAAGGTTT
GAAAACAGACTTATCTTTTCCCAAGCTAATTAATTTACCTTTCAACATTG
CAACATGCATAGTGcggttttttttgtcaaataagGCCACATATCAACCT
TAACTATCGAGACTTTATGAGAAAACTTTActtaaaataagagaaaaact
GACCCTCAAAATTAGGATTTTACTAATATCAAAATAGTATTAGTTCGATA
AGGGGAGCTTCAGGAAGCAGCAAGGTGGCGATACATGTAGAGTTCGTTAC
TTTGCCAAAAAGAAATTACGAAACCCTGCTAATGTTAATTACTAGTTTGT
TAGCGTTTTTTGCAAGATGATATGTGATATCTTCAATTCAATTTTCGGAT
GATCATGACAGAAGGCTGATAATCTGGTTAAAGCGTTACCTACTCACCAT
TAGCTCTGGATCATATACCACACATTAACTAAATCGAGATCTCAAATACT
TTATTAATATTGACATTGTgtttaacttatttttaacaTCTTTATTTCAG
ATCTCACACGAGCGCGAACGCAGGATGACGTGGCCCTATAATCCAGTACC
ATCCTATCATGTACCACACCATGGACCATATAACTTCCCTGGACATTACC
CCCTGAATTATTACGGTAAgacttttcaaactcgagatgtATAAAAGTCA
AAACCTCAAAACGGCGCTAATTTTTCGCTGCCAGACCCTGCTGAAAATAT
CTGAATTTTCACTTTTgaagaaaaaggtcaaattctGTTTTTCGAGTAAT
TCTGGTAAACGAAGAATACCTTAAAAAGACTAGTAATATTTCCGTTGGTT
GAAATTGTCACAAATACCAAATACAGAACTAAGCGTTACGTACTTTCATT
GGTACAACAAAACGGAGGAAAGTTAAACTCggtaatattgaaaataaaac
gaAAAGTAACTAACTTACAGTCTCATGGTACAGTTTCCATTCTACTTCAC
TCGACTGTCTTTTCCTAAaggaatacatgtttttttttataagcatacaa
aaatccgaaaacaggctcaaagatgcttaggtcgaaagcttaataatgct
gaaaaatgcttgaggggatgcttaaatctaaagcataaatttaaggaaat
acaaaaaatccgtaaaattccagccaaaaaaagccaaaatcaggaaaaac
atttttcgtaggctcaagttatgcttgccatatgcttaatttttccccat
atctgagcctagatatgcttataagtacaatgcttataaaaaaaataatt
tAGATTTCTAGGtaataatatttaaaatattttgttaaatttcaggATAT
CCAAGAAAGCAAAGACGTGAGCGTACAACATTTACCAAAGGACAATTAGA
AATATTGGAGAATTTATTCCGTGAGACGAAGTACCCTGATGTTTTTATGC
GCGAAGACGTAGCAAGAAGAATCAGCCTACCTGAATCTAGAGTCCAGGTT
AGTTATTATGAAATCTCAACATCTTCTGATATTATGATAATCTTCATCGC
ACAACCTATAACACAAGtataataaagaaatattaaggAGCAATATGTGA
GTGGTCTAAAGCAATTAGCTCATAGATAGCCGAAATCGCTGGCCCTGTTA
AAATAATGGAAACGCGGTCTATGGGTTGTAGACTACTGGGGTATCTATGT
AAAATAAAGACTTTATGcagaaagtttttgtttgtttttgtttttgtaat
gaaaaattaactctggcTGGCCGGCGAATTCATAGCAAACGCAGTGTATT
TATTAGcgtaaatatgtacttgaggcgAACCGAACTTTTCGAACGGCTAA
TTGTAATTATTTTCGTACCTTGGACCGTCGAAATTCGCCGTTTGCCGGGC
CTAAATAAGACCCTTAAGCTTTATGTATCTAATACATTGCAAGTTTTGGC
TGATTCGAACACGATCGGGAACTtctttgttcgaattataggagATGAAA
GCATTTAATAAGAGGCTCCACTTGACGAAATTTAGTCCAAATTATAAAGA
GATTAAAATAATAGAAATCGATAATCTCCGAttatttaacattttcaaac
ttttttcatattccaGGTTTGGTTTAAAAACAGGCGTGCAAAACACCGAC
AGAAATCCAAGAAATCATCATCTACATCACAAAGTACGAACTCAGATTCC
AGTCCTGAACGAGGAGACCGTTCGCCTGCCCTCCAATCTCCTAACTCTGA
TAAATCACACAACATTGACCCACCACCACTTTCGTCACCGGCAAAACCGA
ACCATAGCAACAGCAACCATAGCAACAGCAACCATAGCAGCAGtaataac
aacaataataatgGCAGTAATGGAAACACAACATCAGAATCAACAAACGA
GTTTAATAACAACAAATCCCAATGCACATTCAATAACAACCATTTACCTC
AAAATCCATTAACACCAACCACGCCTACAAACACGGGCGGATATCCGCCA
CTCGAAAGAGCACCCTCGTATCCTAACTACATCCCTCAATCTTTCCAGCA
ATCGCAAAGAGGATATGGTGGACAATCAGATTCGTCATACTGTCCATATT
CACCGACCAGCGGTCGTCAATCTTTCTACCAATCCTCACATCTGCACCCA
CATTCAACTAGCGATTACCAGCCATGTGCAGTAGATGTTCATGGCTCTAC
ACCTTTAAGTCCTGGTTGGAATACATATGGTCCGAACATATGAGACTAGT
TTAAATAACTACATTTAAGTGATTCACCAAAGAATAGtgatgtcagatct
aacaagtTTCCCACAATCTAACAAGATCGAAGTGACACAAACTAAACCCT
AATTGAAAATAAGACAGAGACATGTCTCTTTAAGAAATGGTTAGTGGTTT
CCGCATATTCAATTGTTGATAAAACAGTAGAAGAAGTAATTGGTAGCGAA
CCAACGACAGGATAACTCTTAATTCCGAAATTCTGTATGCGCGGCAAGGG
AAAAAGGAAACTTAATTTATTCAGGTCATATTGGCTTTTAATTTAGTTTG
AAACAAGATTTCTCATCTCGCCTATCAgttttctgttttcaaatttgaaa
tgtaaTAAATTGTAAAGAGCTGAAACTGCAGAAAATTTAGAACGatacaa
tttctttttttaaagatatttttttgaacttttagaaatttttcgttttt
ccaaTAATTCTAAGACAAACGAATATATTATTGTGTATAGCTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000394-exon-sc0000002-1491911889:19854..19897 | TCONS_00000394-exon-sc0000002-1491911889:19854..19897 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1510915933:19854..19897 | TCONS_00000394-exon-sc0000002-1510915933:19854..19897 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1575043694:19854..19897 | TCONS_00000394-exon-sc0000002-1575043694:19854..19897 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1491911889:21554..21668 | TCONS_00000394-exon-sc0000002-1491911889:21554..21668 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1510915933:21554..21668 | TCONS_00000394-exon-sc0000002-1510915933:21554..21668 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1575043694:21554..21668 | TCONS_00000394-exon-sc0000002-1575043694:21554..21668 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1491911889:22349..22500 | TCONS_00000394-exon-sc0000002-1491911889:22349..22500 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1510915933:22349..22500 | TCONS_00000394-exon-sc0000002-1510915933:22349..22500 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1575043694:22349..22500 | TCONS_00000394-exon-sc0000002-1575043694:22349..22500 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1491911889:23120..24246 | TCONS_00000394-exon-sc0000002-1491911889:23120..24246 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1510915933:23120..24246 | TCONS_00000394-exon-sc0000002-1510915933:23120..24246 | Clytia hemisphaerica | exon |
| TCONS_00000394-exon-sc0000002-1575043694:23120..24246 | TCONS_00000394-exon-sc0000002-1575043694:23120..24246 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:19854..24246 + |
Blast
BLAST of TCONS_00000394 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.229e-26 Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 3
Query: 138 HYPLNYYGYPRKQRRERTTFTKGQLEILENLFRETKYPDVFMREDVARRISLPESRVQVWFKNRRAKHR 344
H + Y PRKQRRERTTFT+ QL++LE LF +T+YPD+FMRE+VA +I+LPESRVQVWFKNRRAK R
Sbjct: 26 HPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94
The following BLAST results are available for this feature:
|
