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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000463 ID=TCONS_00000463|Name=TCONS_00000463|organism=Clytia hemisphaerica|type=transcript|length=904bp
AAAATCAGGTGCAATAAGCGTCATGCCAACCCCCTAACTTTCTCAAACGA
CCAGCATACTTAAGCTCAAAAGTACCATGTATTTGTTCGAAAAACACTAG
CTCTTTTTGGAGAAGCACCAAAACATTAGCAAGATGATGAATCTTAAGTT
TTTGATTTCTATCCTAGTTGTTACAACTGCTACAGGCGCACAGCAAACAC
AGCGATTGAACTGTGGTACGAAAACAACAATATCAGAAATCGCATTGGTC
GTTGATTCCTCTGGAAGTATCGATGCTGAAGAATATAGAAATCTAACAAG
tTTCGCTAAAACCATTGTCCAAAGAGTGACAATCAGCAGTAATGGAAGTC
ATATGTCATATACCAGTTTCTCAACAAACGCATATATCGAAATCTCCTGC
GATCAATTTACCACAACTGCTGGATTCGTTGGTGAAATCGATCAGATAGA
CCGTGGCAGACATGATGATTTTACCAACATCCAAGATGGTTTGATCAAAG
GTGACCAATCACTGCAACAGAACGGATGTGGAGACAGGAAAGACGCCAAA
CAATTCGTGATTCTGATGACTGATGGAAAAGCTAACCGTGGTGATAGTGA
GACCGCCCATATAGAGAAGGGCGAGGCAATTCGAAAACGTGGCGTTGAGA
TATTCGCCCTTGGAATTGGAAATTCAGTTGATATGAAGAATTTGGAATTG
ATTGCTGGTGATTCAGCGCATACACACAAAGTGGATGATTTCAAGAGTTT
GTTAGATGATGGAGTTCTACAGAAAGTGATTTCTATTGCCTGTCCACCTG
AGACTGATGGAAGAACGACcccaacaacaacgaccacccctacaacgaca
acgaccactcctacaacgacaacgaccacccctacgACGACAACAACAAC
TACC Run BLAST on NCBI protein sequence of TCONS_00000463-protein >TCONS_00000463-protein ID=TCONS_00000463-protein|Name=TCONS_00000463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MMNLKFLISILVVTTATGAQQTQRLNCGTKTTISEIALVVDSSGSIDAEE
YRNLTSFAKTIVQRVTISSNGSHMSYTSFSTNAYIEISCDQFTTTAGFVG
EIDQIDRGRHDDFTNIQDGLIKGDQSLQQNGCGDRKDAKQFVILMTDGKA
NRGDSETAHIEKGEAIRKRGVEIFALGIGNSVDMKNLELIAGDSAHTHKV
DDFKSLLDDGVLQKVISIACPPETDGRTTPTTTTTPTTTTTTPTTTTTTP
TTTTTTT Run BLAST on NCBI transcript from alignment at sc0000002:1093282..1095366+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000463 ID=TCONS_00000463|Name=TCONS_00000463|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at sc0000002:1093282..1095366+ (Clytia hemisphaerica)
AAAATCAGGTGCAATAAGCGTCATGCCAACCCCCTAACTTTCTCAAACGA
CCAGCATACTTAAGCTCAAAAGTACCATGTATTTGTTCGAAAAACACTAG
CTCTTTTTGGAGAAGCACCAAAACATTAGCAAGATGATGAATCTTAAGTT
TTTGATTTCTATCCTAGTTGTTACAACTGCTACAGGCGCACAGCAAACAC
AGCGATGTAAGTTACTTTAATACATTCGAAATGTCTGCTTTATCTGTTCA
CTTTCGTTTTAAAACGGACACTGCCGATTACTAGTATAAACGTAGCAGAG
GTGTCAAAATACCGGCAATGCTTTCAAAGGGCCATTACTTTTGATACAGC
CCTTGGgagggggggtccgaataagcagggggtaggaaatttttaaattc
taataagcggggggatggaataagagggggtaatttgaagacagaatttt
tttgcTAGCTATTAtttccatttatactgagagggaaaaatcgtctgaga
cgAGAAGTTCgtaaaatgtgatctgtggaggagatcctatttattgaaac
atgaatggaaagtacactcctccataatgctcattttctaaattgctcgt
ctcagataaattaatcgtctcagtataaatagaactatttttgaaatcta
cgtAAAATACTGTGTCGATTGACATATAATTTGAAGTCATTTGAAGCAAA
AGTTAGACCACAGGAGcctctgaaagtcaaacttGCGATAAAGTCCCGAG
AGGTTAAAttttcgatttcagaaaaaaggggcTCGGCAGTGAACGTGTTA
TAAAGTCGTTCGTGCTTTTCATACGGCTGATTTTTACACAAATAGAAATA
AATGTCAAACTGCAAATAAAATCTACTAGCTTTTAAAATATAATACCGAT
TGAAATCAAAGTAGTGGTTGTTATAGAATTACCTCTGGGACTAAATTCGA
CCTTtgtttcataattatatttgtaGTGAACTGTGGTACGAAAACAACAA
TATCAGAAATCGCATTGGTCGTTGATTCCTCTGGAAGTATCGATGCTGAA
GAATATAGAAATCTAACAAGGTATGAATTTTTAAGCTtttgagaaaaatc
tttttgctaaAAAGAATTTGATCTTAACTGAACACCGGGTCTGAATAAAA
AATTGCCACAGTCAAgacaaaatcaagttttgtaGCATAATCGACAATTT
GATGCTAAAATCCCATACGAATTCTCGGAATTCGCAAATAGAGTGTCTTT
AAAGAATTAATGTCTTTCGTtgtaaatttcaagattttgactATCCACAA
AGTTCTGATTCGCCAAGTTTGTACTTgaaagtatttaaaaaatattccaa
tACTGTAATTATAGTAGCTGTTCTTAGTAAAAAGCAACATGAAAAAATAA
GTAGATAATGAATGATCAAATGAAGATATTTACTCGAGGCACTGAAATCC
TctcatcaaaacatttttttttaattcttagtTTCGCTAAAACCATTGTC
CAAAGAGTGACAATCAGCAGTAATGGAAGTCATATGTCATATACCAGTTT
CTCAACAAACGCATATATCGAAATCTCCTGCGATCAATTTACCACAACTG
CTGGATTCGTTGGTGAAATCGATCAGATAGACCGTGGCAGACATGATGAT
TTTACCAACATCCAAGATGGTTTGATCAAAGGTGACCAATCACTGCAACA
GAACGGATGTGGAGACAGGAAAGACGCCAAACAATTCGTGATTCTGATGA
CTGATGGAAAAGCTAACCGTGGTGATAGTGAGACCGCCCATATAGAGAAG
GGCGAGGCAATTCGAAAACGTGGCGTTGAGATATTCGCCCTTGGAATTGG
AAATTCAGTTGATATGAAGAATTTGGAATTGATTGCTGGTGATTCAGCGC
ATACACACAAAGTGGATGATTTCAAGAGTTTGTTAGATGATGGAGTTCTA
CAGAAAGTGATTTCTATTGCCTGTCCACCTGAGACTGATGGAAGAACGAC
cccaacaacaacgaccacccctacaacgacaacgaccactcctacaacga
caacgaccacccctacgACGACAACAACAACTACC Coding sequence (CDS) from alignment at sc0000002:1093282..1095366+ >TCONS_00000463 ID=TCONS_00000463|Name=TCONS_00000463|organism=Clytia hemisphaerica|type=CDS|length=2313bp|location=Sequence derived from alignment at sc0000002:1093282..1095366+ (Clytia hemisphaerica)
ATGATGAATCTTAAGTTTTTGATTTCTATCCTAGTTGTTACAACTGCTAC
AGGCGCACAGCAAACACAGCGATTGAACTGTGGTACGAAAACAACAATAT
CAGAAATCGCATTGGTCGTTGATTCCTCTGGAAGTATCGATGCTGAAGAA
TATAGAAATCTAACAAGtTTCGCTAAAACCATTGTCCAAAGAGTGACAAT
CAGCAGTAATGGAAGTCATATGTCATATACCAGTTTCTCAACAAACGCAT
ATATCGAAATCTCCTGCGATCAATTTACCACAACTGCTGGATTCGTTGGT
GAAATCGATCAGATAGACCGTGGCAGACATGATGATTTTACCAACATCCA
AGATGGTTTGATCAAAGGTGACCAATCACTGCAACAGAACGGATGTGGAG
ACAGGAAAGACGCCAAACAATTCGTGATTCTGATGACTGATGGAAAAGCT
AACCGTGGTGATAGTGAGACCGCCCATATAGAGAAGGGCGAGGCAATTCG
AAAACGTGGCGTTGAGATATTCGCCCTTGGAATTGGAAATTCAGTTGATA
TGAAGAATTTGGAATTGATTGCTGGTGATTCAGCGCATACACACAAAGTG
GATGATTTCAAGAGTTTGTTAGATGATGGAGTTCTACAGAAAGTGATTTC
TATTGCCTGTCCACCTGAGACTGATGGAAGAACGACcccaacaacaacga
ccacccctacaacgacaacgaccactcctacaacgacaacgaccacccct
acgACGACAACAACAACTACCATGATGAATCTTAAGTTTTTGATTTCTAT
CCTAGTTGTTACAACTGCTACAGGCGCACAGCAAACACAGCGATTGAACT
GTGGTACGAAAACAACAATATCAGAAATCGCATTGGTCGTTGATTCCTCT
GGAAGTATCGATGCTGAAGAATATAGAAATCTAACAAGtTTCGCTAAAAC
CATTGTCCAAAGAGTGACAATCAGCAGTAATGGAAGTCATATGTCATATA
CCAGTTTCTCAACAAACGCATATATCGAAATCTCCTGCGATCAATTTACC
ACAACTGCTGGATTCGTTGGTGAAATCGATCAGATAGACCGTGGCAGACA
TGATGATTTTACCAACATCCAAGATGGTTTGATCAAAGGTGACCAATCAC
TGCAACAGAACGGATGTGGAGACAGGAAAGACGCCAAACAATTCGTGATT
CTGATGACTGATGGAAAAGCTAACCGTGGTGATAGTGAGACCGCCCATAT
AGAGAAGGGCGAGGCAATTCGAAAACGTGGCGTTGAGATATTCGCCCTTG
GAATTGGAAATTCAGTTGATATGAAGAATTTGGAATTGATTGCTGGTGAT
TCAGCGCATACACACAAAGTGGATGATTTCAAGAGTTTGTTAGATGATGG
AGTTCTACAGAAAGTGATTTCTATTGCCTGTCCACCTGAGACTGATGGAA
GAACGACcccaacaacaacgaccacccctacaacgacaacgaccactcct
acaacgacaacgaccacccctacgACGACAACAACAACTACCATGATGAA
TCTTAAGTTTTTGATTTCTATCCTAGTTGTTACAACTGCTACAGGCGCAC
AGCAAACACAGCGATTGAACTGTGGTACGAAAACAACAATATCAGAAATC
GCATTGGTCGTTGATTCCTCTGGAAGTATCGATGCTGAAGAATATAGAAA
TCTAACAAGtTTCGCTAAAACCATTGTCCAAAGAGTGACAATCAGCAGTA
ATGGAAGTCATATGTCATATACCAGTTTCTCAACAAACGCATATATCGAA
ATCTCCTGCGATCAATTTACCACAACTGCTGGATTCGTTGGTGAAATCGA
TCAGATAGACCGTGGCAGACATGATGATTTTACCAACATCCAAGATGGTT
TGATCAAAGGTGACCAATCACTGCAACAGAACGGATGTGGAGACAGGAAA
GACGCCAAACAATTCGTGATTCTGATGACTGATGGAAAAGCTAACCGTGG
TGATAGTGAGACCGCCCATATAGAGAAGGGCGAGGCAATTCGAAAACGTG
GCGTTGAGATATTCGCCCTTGGAATTGGAAATTCAGTTGATATGAAGAAT
TTGGAATTGATTGCTGGTGATTCAGCGCATACACACAAAGTGGATGATTT
CAAGAGTTTGTTAGATGATGGAGTTCTACAGAAAGTGATTTCTATTGCCT
GTCCACCTGAGACTGATGGAAGAACGACcccaacaacaacgaccacccct
acaacgacaacgaccactcctacaacgacaacgaccacccctacgACGAC
AACAACAACTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000463-exon-sc0000002-1491911889:1093282..1093487 | TCONS_00000463-exon-sc0000002-1491911889:1093282..1093487 | Clytia hemisphaerica | exon |
| TCONS_00000463-exon-sc0000002-1510915933:1093282..1093487 | TCONS_00000463-exon-sc0000002-1510915933:1093282..1093487 | Clytia hemisphaerica | exon |
| TCONS_00000463-exon-sc0000002-1575043694:1093282..1093487 | TCONS_00000463-exon-sc0000002-1575043694:1093282..1093487 | Clytia hemisphaerica | exon |
| TCONS_00000463-exon-sc0000002-1491911889:1094258..1094351 | TCONS_00000463-exon-sc0000002-1491911889:1094258..1094351 | Clytia hemisphaerica | exon |
| TCONS_00000463-exon-sc0000002-1510915933:1094258..1094351 | TCONS_00000463-exon-sc0000002-1510915933:1094258..1094351 | Clytia hemisphaerica | exon |
| TCONS_00000463-exon-sc0000002-1575043694:1094258..1094351 | TCONS_00000463-exon-sc0000002-1575043694:1094258..1094351 | Clytia hemisphaerica | exon |
| TCONS_00000463-exon-sc0000002-1491911889:1094763..1095366 | TCONS_00000463-exon-sc0000002-1491911889:1094763..1095366 | Clytia hemisphaerica | exon |
| TCONS_00000463-exon-sc0000002-1510915933:1094763..1095366 | TCONS_00000463-exon-sc0000002-1510915933:1094763..1095366 | Clytia hemisphaerica | exon |
| TCONS_00000463-exon-sc0000002-1575043694:1094763..1095366 | TCONS_00000463-exon-sc0000002-1575043694:1094763..1095366 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1093282..1095366 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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