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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000554 ID=TCONS_00000554|Name=TCONS_00000554|organism=Clytia hemisphaerica|type=transcript|length=1838bpRun BLAST on NCBI protein sequence of TCONS_00000554-protein >TCONS_00000554-protein ID=TCONS_00000554-protein|Name=TCONS_00000554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp MPKKAKKAKGKSKKDKKGRKSSKGVKVNNDDVLKQAIANACLWESRLGTVRun BLAST on NCBI transcript from alignment at sc0000002:470542..486353- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000554 ID=TCONS_00000554|Name=TCONS_00000554|organism=Clytia hemisphaerica|type=transcript|length=15812bp|location=Sequence derived from alignment at sc0000002:470542..486353- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:470542..486353- >TCONS_00000554 ID=TCONS_00000554|Name=TCONS_00000554|organism=Clytia hemisphaerica|type=CDS|length=20553bp|location=Sequence derived from alignment at sc0000002:470542..486353- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000554 vs. Swiss-Prot (Human)
Match: BBOF1 (Basal body-orientation factor 1 OS=Homo sapiens GN=BBOF1 PE=2 SV=3) HSP 1 Score: 337.421 bits (864), Expect = 1.879e-107 Identity = 192/477 (40.25%), Postives = 319/477 (66.88%), Query Frame = 1
Query: 148 NDDVLKQAIANACLWESRLGTVEVAKNEYRDTTRTLLHENEKLQTQVSQTEKETVDVLSFLRDEDIKKNNTINKLQLMIXXXXXXXXXXXQGFIDDYTKQIETLQTSLTDKTNEVKLMQSELKLVKEFRRKRALMQKEIDDIKDNLFMNEKQHEHALEKIERKFFDEKIRMQQEANRKISELAERAHNEAISNLDDTTKSVYKENVRLNEALTYHIKAGEELSQHKENLEEQNKKLSSEKEMNSLXXXXXXXXXXXXXXANSSLQQKVDDLEKALTEVMSENNQKKTSLVQKHNQEQEGNKMEIARLQRIIELKNKEMSRVKKLAKNILDQRSDVEKFFIESLEMVKTEIIRNRAQYRRDAEVAYNKRMTEAHSGHSDYPKVRTFRHLKNSTNSVYADLRAAERWDGFDASVDLSELTWEQREQVLRLLFAKMNGQKTSKVSKSILPPIN----SKMDETKAHQPKPPSVQKAFLTE 1566
++ V+ +A ANA LWE+RL E+++ +YRDT+R L NE L+ + + EK+ + VLS+L+ +D +K+N I KL+ + + K+ ++EK YT+QI L+ K E+ ++ +ELK V++F++++ +++E+DD+K+NL E+ H+ L ++E +FF+EK R++QEA +KI LAERAH+EAI L+D ++V+KEN L +AL YH+K + L ++ + L+E + L +KE+N L+V+EK+++ + + +LQ+KV +LE AL+ + E + L Q E + ++EI +LQ ++++K++EM+RVKKLAKNILD+R++VE+FF+++L VK +I+ +R Y++ A+ A+N +M A +G ++YPK+RTF ++STNSV DL AE+W + +VD+ +LTWEQ+E+VLRLLFAKMNG + K ++S PP+ S ETK + K F+T+
Sbjct: 25 DESVVDRAKANASLWEARLEVTELSRIKYRDTSRILAKSNEDLKKKQCKMEKDIMSVLSYLKKQDQEKDNMIEKLKQQLNETKEKAQEEKDKLEQKYTRQINELEGQFHQKAKEIGMIHTELKAVRQFQKRKIQVERELDDLKENLRNTERIHQETLRRLESRFFEEKHRLEQEAEKKIIMLAERAHHEAIVQLNDAGRNVFKENDYLQKALAYHLKETDALQKNSQKLQESHTLLLHQKEINDLLVKEKIMQLVQQRSQIQTLQKKVVNLETALSYMTKEFESEVLKLQQHAMIENQAGQVEIDKLQHLLQMKDREMNRVKKLAKNILDERTEVERFFLDALHQVKQQILISRKHYKQIAQAAFNLKMRAACTGRTEYPKIRTFDGREHSTNSVNQDLLEAEKWTHIEGNVDIGDLTWEQKEKVLRLLFAKMNGCPSRKYNQSSRPPVPDYVVSDSGETKEFGDESKLQDKIFITQ 501 The following BLAST results are available for this feature:
BLAST of TCONS_00000554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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