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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000871 ID=TCONS_00000871|Name=TCONS_00000871|organism=Clytia hemisphaerica|type=transcript|length=5998bpRun BLAST on NCBI transcript from alignment at sc0000005:1163886..1207789- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000871 ID=TCONS_00000871|Name=TCONS_00000871|organism=Clytia hemisphaerica|type=transcript|length=43904bp|location=Sequence derived from alignment at sc0000005:1163886..1207789- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000871 vs. Swiss-Prot (Human)
Match: FRYL (Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2) HSP 1 Score: 987.252 bits (2551), Expect = 0.000e+0 Identity = 592/1337 (44.28%), Postives = 852/1337 (63.72%), Query Frame = 2
Query: 410 TTTEDVNPGEYVLQTLFSEFTILAEKKIDRLMKESFDRPLSKSLQRGEDPQFDQXXXXXXXXXXXXXXXXXKTLYKWYERQIAGNPDDSGSKSP-SRIKSGSESPRPGSRASFREKDILWERRNLAVEFIFCLVLIEVLKQLSLHPVEDSLINYIENLAFKHFKENNADAPTSAVTANQNIITALYAEVIGVLAQTRFQSIRKRFKQEFKD------NINNSQVLLNITMGLKYIRIKLYPVDEVEESFLFLQECAHMFQEKSLVKEVKYAFASLFVEILIPVAATAKREYSIPAVKKFVDILFKETMDMSKKGKHSMAVYPLVTALLCISQKPFFLTNWGGFLNMCLNSIKSRDVKMQRMAMECLYRLLWVYIIRIKCEAHTITINRLRSITDTLFPKNSRTIIPRNIPLTIFVKIIQFIAQEKLDFAMQDIIFDLLNIGK--KSGTLNPERMNIGLRAFLVIADNLQRKEGSPPMPSTIGQLPSGNXXXXXX--XXXXXXEEAARNIGVVTYYTSVRRALDSILKSLDVNVGRPMTLINPQNVNKEANDMITGERKAKIDLFRTCVAAIPKCIPDGMSKIDLVELVARLTLHMDEELRNLAFTALQGLIVDFPEYRDEILKGYIEFTLKEVHDSFPSLIENSIRMLAQLLIQWRMALIQPVGSTTDKYLEMSMHCSKTANEKETQSAHTLYCVEGFALSMLCSIKAMHRKLAFTVLKEVRQLYKCI-YPDSKDASVIDIIESCAPAVIEKALSCVSGSDKSSLGLSP-QMDXXXXXXXXXXXXXXQKDNVSN---------CISRELWSHCLAGFLEEIFTRCKHWAQMFYFTWPHINNRLFTIYGVIDPNADFDSIKSRTSLISFKAPRTPANVFDVSLWRNYLIFLC---------------CAPPKNVLNTSPIATITAXXXXXXXXXXXXKLPADYPRLSEVFRTAIMLVKSESYEIREAAVTGLGKTNPKAHPQLIEELQPLIRDVLDXXXXXXXXXXXXXXXXXXXXXIFAANAEQGCFRYSLS-QVDNNN--ILTCLAEYIEGMRVILESENDKTDAGLMQLRLYFSRFLHKMVKSIPNHMKSSLLRNQG-RHHLFLLLASWCGHFNV--NSLXXXXXXXXXXIELEFSALEAMCALLCCGQVFDQKALTVSNGYLYKLLDTMLISKNNKVNKLGQETVELLLENNESIPALLNFVVDRCYTGQRGISNGCFLALANVFSKHPYSCQLIPLICVVLFKTADPSQEIREKAAQLICILDRRFFGYM----VPFRSAVAA--------YTYGNQAFSQQLAFTHPELTLPLLSEMTLRFETATMVGXTIF 4255
T DV PGEYV+++LF+EF + AEKKI+ +M E ++ LS+SLQRGED QFDQL+SS+SSV+EHCL SLL+TL+ WY RQ G D+S P S KS + + RE+D L ERR+LAV+FIFCLVL+EVLKQ+ +HPV D L++ + NLAFKHFK + T+ T N +II LYAEVIGVLAQ++FQ++RK+F E K+ + + Q ++++ MG+K+ R+K+YPV++ E SF F+QECA F E K++K+A A LFVEILIPVAA K E ++P +K FV++L++ T ++S + KHS+A+YPL+T LLC+SQK FFL NW FL CL+ +K++D KM R+A+E LYRLLWVY+IRIKCE++T+T +RL SI LFPK SR+++PR+ PL IFVKIIQFIAQE+LDFAM++IIFDLL++GK K+ T+NPERMNIGLR FLVIAD+LQ+K+G PPMP+T LPSGNTL+VKK LT+E A+ IG+ YY VR+ALDSIL+ LD VGRPM + + Q NKE DMITGERK KIDLFRTC+AAIP+ IPDGMS+ DL+EL+ARLT+HMDEELR LAF LQ L++DFP++R+++L G++ F ++EV D P+L++N+++ML QL+ QW+ A Q D ++ S + + ++ + VEGFAL +LCS + R+LA +VL+E+R L+ + P D ID+++ +P+++E + ++G+D+++L P +DL LAE ++ Q D +S ++ W L+ FL++ KH + + W RL + +D N+ ++ K T+ T ++ + + LWRNYLI C C+PP+ L ++P + + P S +F+ + +++SES EI E+ V GLG+TNP A +LIEEL P+I++ L+R+ E ++++++RD+LR+QL RIF A+ G +S S +DN + L EY++ R +LE+EN+K L +R +FS + +++++P H + S+ Q RH LF+L + W G F++ L + ++ AL+AM A+LCCG V D L+ S+GYLYK LD +L S + KV++LG E V LLLE N L+ + VDRCYTG ++ GCF A+ANVF Y C + L+ ++LFK AD S+ I E A QL+ IL+ + F Y V V + Y+ S++LA +PELTL + SE++ R +TA G +
Sbjct: 5 TIDPDVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAEHCLPSLLRTLFDWYRRQ-NGTEDESYEYRPRSSTKSKGDEQQ-------RERDYLLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSGTN--TGNVHIIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKMYPVEDFEASFQFMQECAQYFLEVK-DKDIKHALAGLFVEILIPVAAAVKNEVNVPCLKNFVEMLYQTTFELSSRKKHSLALYPLITCLLCVSQKQFFLNNWHIFLQNCLSHLKNKDPKMSRVALESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGEPPMPTTGVILPSGNTLRVKKIFLNKTLTDEEAKVIGMSVYYPQVRKALDSILRHLDKEVGRPMCMTSVQMSNKEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLARLTIHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVTDVHPTLLDNAVKMLVQLINQWKQA-AQMHNKNQDTQHGVANGASHPPPLERSPYSNVFHVVEGFALVILCSSRPATRRLAVSVLREIRALFALLEIPKGDDELAIDVMDRLSPSILESFIH-LTGADQTTLLYCPSSIDLQTLAEWNSSPISHQFDVISPSHIWIFAHVTQGQDPWIISLSSFLKQ-ENLPKHCSTAVSYAWMFAYTRLQLLSPQVDINSPINAKKVNTT--------TSSDSY-IGLWRNYLILCCSAATSSSSTSAGSVRCSPPE-TLASTPDSGYSIDSKII-----------GIPSPSSLFKHIVPMMRSESMEITESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLVRIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHFSALVANIIQNVPVHQRRSIFPQQSLRHSLFMLFSHWAGPFSIMFTPLDRYSDRNMQINRHQYCALKAMSAVLCCGPVADNVGLS-SDGYLYKWLDNILDSLDKKVHQLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSGRVAAGCFKAIANVFQNRDYQCDTVMLLNLILFKAADSSRSIYEVAMQLLQILEPKMFRYAHKLEVQRTDGVLSQLSPLPHLYSVSYYQLSEELARAYPELTLAIFSEISQRIQTAHPAGRQVM 1305 HSP 2 Score: 171.4 bits (433), Expect = 2.771e-42 Identity = 148/481 (30.77%), Postives = 237/481 (49.27%), Query Frame = 1
Query: 4267 AKKVAIYIARAKTEKTIHVLTEELRLTEIVTNFWDRLDCPPYIKPLNKCITPPSTVSTGRKNEDYKKNITSPKKQPSLDSEYPEMRSESPSFPQQAPFNNRLSTER------SSINSARNFAESVLESVKASQMASQIEQKKTETGSSELWMLNWVLKAHSMQGVGLPLPMPYELQYFAPITQAFP-LASPPAQLYRCNFSLMLLAEIVSDQR-DISWIFYXXXXXXXXXXXXDHAKPLVHENCKRLIINLLVVLVCDGDRSTIAKALM---DFH-----TVSSTA---LNRSASLKN------SNVKTSADGAVLESDELLKDEDRENLVAQAGGPELEERGLSI--DERAREVIEYLAKSDCKPLWAFEDITPRNGTVKSADQLESFLQIIVQLFDDALPNAL-LPGRWARESLHWATSCSSRHYAGRSFQIFRSLKIPLSWPMLSDILQRLVESVADSSDDVQGYFMEILMTFLAEVD 5625
KKV +Y+ R KT + + L EL+LT+ V++ +D PPY R YK P S M + + P P + S +NS N LES +S E++K++ S L+ NW LK G PLP P ++P+ P +SP L+RCN +++LL +++ D + W YL LLLH F+G DH P V+E+CKRL+++LL+V+ + + T+A L+ +F+ TV A N +A + + + T + + + + + ++ L E +S+ D + + ++E++ PLW ED++ +N ++KSA+QL +FL+ +V +F + + L + +L A SCSSRHYAGRSFQIFR+LK PL+ LSD+L RLVE+V D +D QG+ +E+L+T + +D
Sbjct: 1423 VKKVIVYLGRDKTMQLLEELVSELQLTDPVSSGVTHMDNPPYY----------------RITSSYK----IPSVTSGTTSSSNTMVAPTDGNPDNKPIKENIEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSD--SMPLYS-NWRLKVME-HNQGEPLPFPPAGGCWSPLVDYVPETSSPGLPLHRCNIAVILLTDLIIDHSVKVEWGSYLHLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVASVLLRNKEFNEPRVLTVKQVAHLDYNFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHTTILNEVDISVEQDGKVKTLMEFITSRKRGPLWNHEDVSAKNPSIKSAEQLTTFLKHVVSVFKQSSSEGIHLEHHLSEVALQTALSCSSRHYAGRSFQIFRALKQPLTATTLSDVLSRLVETVGDPGEDAQGFVIELLLTLESAID 1879 The following BLAST results are available for this feature:
BLAST of TCONS_00000871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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