TCONS_00000919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000919
Unique NameTCONS_00000919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000919 ID=TCONS_00000919|Name=TCONS_00000919|organism=Clytia hemisphaerica|type=transcript|length=584bp
AATCGTCTCACTCAATCGAATTGCTCGAATCGTCTCACTCAATCGAATCG
TTCGAATCGTCTCACTCAATCGAATCGTTCGAATCGTCTCACTCAATCGA
ATCGTTTGAATCGTCTCACTCAATCGAAGCGTGCAAATCGTCTCACTTGA
TCGAATTGTTCGAATCGTCTCACTCAATCGAACCGTCTCACTCGATCGAA
TTGTTCGAATCGTCTCACTCAATCGAATCATTCGAATCGTCTCACTCAAT
CGAATCGTTTGAGTCGTCTCACTCAATCGAATTGTTTGAGTCGTCTCACT
CAATCAAATCGTTCGAATCGTCTCACTCAATCGAAACGCTCAAATCGCTC
GAATCGTCTCACTCAATTGAATCACTCAAATTGTTTCAATCAAGAGTTGA
CTTGCTTGCATTGTATCAATCAAATGGCTTGTTTGCATCTTATCAGTCAA
ATGGCTTGTTAgagattgtttgttttatttcagTTTGTTGCTCTTTGGTT
CTTGTTGTTCTTGAAAGATTATTGCTTTTCAAATTATTATTCATTCGCCT
TATATGGGAAAGGTGGAAATTTATTCATTCAAAA
Run BLAST on NCBI

protein sequence of TCONS_00000919-protein

>TCONS_00000919-protein ID=TCONS_00000919-protein|Name=TCONS_00000919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
SSHSIELLESSHSIESFESSHSIESFESSHSIESFESSHSIEACKSSHLI
ELFESSHSIEPSHSIELFESSHSIESFESSHSIESFESSHSIELFESSHS
IKSFESSHSIETLKSLESSHSIESLKLFQSRVDLLALYQSNGLFASYQSN
GLLEIVCFISVCCSLVLVVLERLLLFKLLFIRLIWERWKFIHSK
Run BLAST on NCBI

transcript from alignment at sc0000005:589215..589798

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000919 ID=TCONS_00000919|Name=TCONS_00000919|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at sc0000005:589215..589798 (Clytia hemisphaerica)
TTTTGAATGAATAAATTTCCACCTTTCCCATATAAGGCGAATGAATAATA
ATTTGAAAAGCAATAATCTTTCAAGAACAACAAGAACCAAAGAGCAACAA
ActgaaataaaacaaacaatctcTAACAAGCCATTTGACTGATAAGATGC
AAACAAGCCATTTGATTGATACAATGCAAGCAAGTCAACTCTTGATTGAA
ACAATTTGAGTGATTCAATTGAGTGAGACGATTCGAGCGATTTGAGCGTT
TCGATTGAGTGAGACGATTCGAACGATTTGATTGAGTGAGACGACTCAAA
CAATTCGATTGAGTGAGACGACTCAAACGATTCGATTGAGTGAGACGATT
CGAATGATTCGATTGAGTGAGACGATTCGAACAATTCGATCGAGTGAGAC
GGTTCGATTGAGTGAGACGATTCGAACAATTCGATCAAGTGAGACGATTT
GCACGCTTCGATTGAGTGAGACGATTCAAACGATTCGATTGAGTGAGACG
ATTCGAACGATTCGATTGAGTGAGACGATTCGAACGATTCGATTGAGTGA
GACGATTCGAGCAATTCGATTGAGTGAGACGATT

Coding sequence (CDS) from alignment at sc0000005:589215..589798

>TCONS_00000919 ID=TCONS_00000919|Name=TCONS_00000919|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000005:589215..589798 (Clytia hemisphaerica)
TTTTGAATGAATAAATTTCCACCTTTCCCATATAAGGCGAATGAATAATA
ATTTGAAAAGCAATAATCTTTCAAGAACAACAAGAACCAAAGAGCAACAA
ActgaaataaaacaaacaatctcTAACAAGCCATTTGACTGATAAGATGC
AAACAAGCCATTTGATTGATACAATGCAAGCAAGTCAACTCTTGATTGAA
ACAATTTGAGTGATTCAATTGAGTGAGACGATTCGAGCGATTTGAGCGTT
TCGATTGAGTGAGACGATTCGAACGATTTGATTGAGTGAGACGACTCAAA
CAATTCGATTGAGTGAGACGACTCAAACGATTCGATTGAGTGAGACGATT
CGAATGATTCGATTGAGTGAGACGATTCGAACAATTCGATCGAGTGAGAC
GGTTCGATTGAGTGAGACGATTCGAACAATTCGATCAAGTGAGACGATTT
GCACGCTTCGATTGAGTGAGACGATTCAAACGATTCGATTGAGTGAGACG
ATTCGAACGATTCGATTGAGTGAGACGATTCGAACGATTCGATTGAGTGA
GACGATTCGAGCAATTCGATTGAGTGAGACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000544XLOC_000544Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000919-exon-sc0000005-1491911889:589215..589798TCONS_00000919-exon-sc0000005-1491911889:589215..589798Clytia hemisphaericaexon
TCONS_00000919-exon-sc0000005-1510915933:589215..589798TCONS_00000919-exon-sc0000005-1510915933:589215..589798Clytia hemisphaericaexon
TCONS_00000919-exon-sc0000005-1575043694:589215..589798TCONS_00000919-exon-sc0000005-1575043694:589215..589798Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000919-proteinTCONS_00000919-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:589215..589798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.82749	8.04225	4.13481	2.41039	14.6721	9.57771	12.2849	12.0703	4.57364	3.5411	0.670949	2.68646	1.97767	0.758287	1.18187	0.790215	0.923278	0.800741	0.402279	1.8943	0.673668	1.3385	1.95255	1.83288	0.507878	0.543923	0.518902	0.553786	0.63004	0.962867
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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