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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000994 ID=TCONS_00000994|Name=TCONS_00000994|organism=Clytia hemisphaerica|type=transcript|length=1887bpRun BLAST on NCBI protein sequence of TCONS_00000994-protein >TCONS_00000994-protein ID=TCONS_00000994-protein|Name=TCONS_00000994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp MASPNEDEKRVALQEKIKEQGEVVRKLKSSKDQTDEIKQQIKDEVAKLLERun BLAST on NCBI transcript from alignment at sc0000007:404900..423361+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000994 ID=TCONS_00000994|Name=TCONS_00000994|organism=Clytia hemisphaerica|type=transcript|length=18462bp|location=Sequence derived from alignment at sc0000007:404900..423361+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:404900..423361+ >TCONS_00000994 ID=TCONS_00000994|Name=TCONS_00000994|organism=Clytia hemisphaerica|type=CDS|length=23850bp|location=Sequence derived from alignment at sc0000007:404900..423361+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000994 vs. Swiss-Prot (Human)
Match: SYHC (Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=HARS PE=1 SV=2) HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0 Identity = 333/525 (63.43%), Postives = 415/525 (79.05%), Query Frame = 1
Query: 244 KRVALQEKIKEQGEVVRKLKSSKDQTDEIKQQIKDEVAKLLELKAQLGGNNTKKKFVLKTPKGTRDYGPKQMAIREKVFKIITETFQKHGAVEINTPVMELKETLTGKYGEDSKLIYDLKDQGGEILALRYDLTVPFARYVAMNKVEKIKRYHIARVYRRDNPAMTRGRYREFYQCDYDVAGQYDPLIPDAECVKIVAEILLKLELGDFVIKVNHRKVLDGIFAISGVPECQFRTICSSVDKLDKTPWEEVRNEMVKEKGLSEDIADKIYEYVQYKGGPELIEKLLNDEKFTNNKSAKEGVEDMKLLFKYCELFGCLQNVSFDLSLARGLDYYTGVIYEAVLTGLPKELMNXXXXXXXXXXXXXXXXQVGVGSVAGGGRYDDLVGMFDSKGKKVPCVGVSLGIERIFSIMEKKQELSEEKARITKTKVLVVSGQKKMLEERLKLVNELWSQNIEAEVTFKANPKLLNQFQYCEDNAIPLCAVIGDSELEKGVVMLRNMKTREQNEVKRDELAEEIRK-----LCV 1803
+R AL+E +K QGE VR LK K + I++EVAKLL+LKAQLG + +K+KFVLKTPKGTRDY P+QMA+REKVF +I F++HGA I+TPV ELKETL GKYGEDSKLIYDLKDQGGE+L+LRYDLTVPFARY+AMNK+ IKRYHIA+VYRRDNPAMTRGRYREFYQCD+D+AG +DP+IPDAEC+KI+ EIL L++GDF++KVN R++LDG+FAI GV + +FRTICSSVDKLDK WEEV+NEMV EKGL+ ++AD+I +YVQ GG L+E+LL D K + NK A EG+ D+KLLF+Y LFG +SFDLSLARGLDYYTGVIYEAVL P + +E +GVGSVA GGRYD LVGMFD KG+KVPCVG+S+G+ERIFSI+E++ E EEK R T+T+VLV S QKK+LEERLKLV+ELW I+AE+ +K NPKLLNQ QYCE+ IPL A+IG+ EL+ GV+ LR++ +RE+ +V+R++L EEI++ LC+
Sbjct: 3 ERAALEELVKLQGERVRGLKQQKASA----ELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQ---------------AGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQPLCI 508 The following BLAST results are available for this feature:
BLAST of TCONS_00000994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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