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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000996 ID=TCONS_00000996|Name=TCONS_00000996|organism=Clytia hemisphaerica|type=transcript|length=1790bp
TATCAGATGCGGTTTTGGCAAGTAAAAATGAATATTGTAATACACATTTG
GGCATAGGTTACAGCTATGAAGTATACCCCAGATTCTCTTTAATTTTTGG
TGTTTATTCGACGAGGAAACAGAGAAACAATGGCGGATCACAACTCAACG
GCGGTAGATCTGGCCTTCTCGTTAGAAACCAGTCAAATATGTGGCGCCTT
TCTACTCATCGTTTCGTTGTTCGGTCTCATGGTGTACGTTCTATTCATGT
TCGTCGTGTTCACACGTCCTAAGTTTAAAGACAAGACTTATTTTACGATC
GCTGGATGTCTCGGTATCGCAGATTGTATGTGTCTCTTCCTAATGATTGG
ATACGCTTCCCCTTGTCTATTTTACCGAACAAGTCTAAGCAACAGTCTCG
CGTTGGGTGGCGTATTGAACATTGGATGGTTCAGCGGACTACCACTACTC
ATCTTTCTAGCTGGTGATCGATATTTGTGCATCTGTAACAAAGATTTGTA
CAGCAGGTTTTACAAGAAACGTTTGACGAACATGTACTGTATAGGATGTT
GGGTGTTTGGTATTGCTTATTCCATCCCCTCCTTCTTCCCATGCTGTTCT
CTACATTTCGATTACACCTTGATGTCATGGGGCTGGAGTATAGACTTCGA
TGGCGCCAAAACATTAGCTTTGGGTGAAATAACCATGGTAGTCATCATCA
CATCAATCACTTACTTCCTCAACGGCCTCGttttcagAGCACTTCGAGAA
GCTCAACGTAACACGTCTTTAGACGCCGTACACGAGCAGCGTAAGAGCGC
ACGTGAACGTAAAGTGTTTATCCAATTCTTCATCACCACTATTTGGTTGG
TGGTGTTTGATGTACCCTTCATCACGATCGGTTACATTGAGAACCCGTCA
CACTGGTTGGGTTATTTCGTCACGTTAGCTTACACCATCAATTGCTCCAT
CAATGGATGGGTTTATTGCTTCATGAACAAAACTGTCAAACGTGAGATCC
GAGAGATCTGTCGGCGTGGATATCGGATACGTGCAGATACGGAAATGAGT
GATCAAGGTCGCAAAACTATCGTTAGACAACGAAAGGATACTAAAAAATC
TGAGGTGGAAAATTTCCGTTTAAAACAAGGCAACACTTCATCCGCATAGG
GTGGATACCATCCTTAATTAAGAGAGGGTTTTGAAAAACTTGTGAATTTA
TTTGTATATTGATTTTAGCATTGAACACATCTTTTTATTGTTTAGTtact
ttttttacaaattgTATATATGCGTGCGTGTGTTAAAATGCAAGGTTTGT
CAAAAACTGtttattggaaattttcatGATATCTAAAAGTCATGTTGGTG
TTTGGAGTGACCGTTTGAGAGTCTCTTTCTCAGTCTTTCTGGTAGGCTAA
CCTCAGAAATTTGCATTCGATTTCTCTTCCCTCCAATTAATAAGGAAATT
GCCTGGATTTCTCTCGTTTATAAAACTCTTGAAACAAATATCACCTAACa
acatttttgaccatttttcttgTGTTATTAATTGAATTTTTCGTTGTCAT
TGGCAACGAAGATGGTAGAATGTTCGAATAATGTAATTGTGGTACTTCCC
AATAAAAAGTTGATGTTTGAGTGATGTCGTGTGTCATTTGCACCAATTCA
CCAGGCGTGGGTAAAGTGAGGTAATATTTAGCTGTTGGATGGTTTATTGA
ATGATAACTTTCATAAGTGTTGTAGAACTCTGGTGTAAAACACTCCACAA
AGACACAATCACGACCTTCTGTCTCCTGAAAATATATAAG Run BLAST on NCBI protein sequence of TCONS_00000996-protein >TCONS_00000996-protein ID=TCONS_00000996-protein|Name=TCONS_00000996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MADHNSTAVDLAFSLETSQICGAFLLIVSLFGLMVYVLFMFVVFTRPKFK
DKTYFTIAGCLGIADCMCLFLMIGYASPCLFYRTSLSNSLALGGVLNIGW
FSGLPLLIFLAGDRYLCICNKDLYSRFYKKRLTNMYCIGCWVFGIAYSIP
SFFPCCSLHFDYTLMSWGWSIDFDGAKTLALGEITMVVIITSITYFLNGL
VFRALREAQRNTSLDAVHEQRKSARERKVFIQFFITTIWLVVFDVPFITI
GYIENPSHWLGYFVTLAYTINCSINGWVYCFMNKTVKREIREICRRGYRI
RADTEMSDQGRKTIVRQRKDTKKSEVENFRLKQGNTSSA Run BLAST on NCBI transcript from alignment at sc0000007:477953..481297+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000996 ID=TCONS_00000996|Name=TCONS_00000996|organism=Clytia hemisphaerica|type=transcript|length=3345bp|location=Sequence derived from alignment at sc0000007:477953..481297+ (Clytia hemisphaerica)
TATCAGATGCGGTTTTGGCAAGTAAAAATGAATATTGTAATACACATTTG
GGCATAGGTTACAGCTATGAAGTATACCCCAGATTCTCTTTAATTTTTGG
TAAGACTAAGGGTTTTAGAGCGAAACTAGAGTCATTAAAAAGCGATCAAA
TCTTTATATAACAGATCGTTTAGAGGACCCatattttagtttttcatttc
tttcactGAAGTTATGATAATATTGGAAGATGTTGGAAGAAGGGTTGGCT
TTAGGAGAAGTGTTTTCAGTTTTGTTATTCTCATCATTCATATCAGTAGC
AGAAGaacaaaatcttttcttttttcttcNTAGAGCGAAAATAGAGTCAT
TAAAAAGCGATCAAATCTTTATATAATAGATCGTTTAGAGGACCCatatt
ttagtttttcatttctttcactGAAGTTGTAAATGATATTTGAAGATGTT
GGAAGAGAGGTTGGCTTTAGGAGaagtgttttcaatttttttattctcaT
CATTCATATCACTAGCAGAAGAAcaaaatcttttctttcttctttttatg
gATGAAAGAACATAAGAAAGGATGAGTAGATAAGAAGATCACATTTTTCA
TGGAGTTTCATTGATTTTTATACTACACGGGAAATCTTTCGTTTTTCGGC
CCAAAAAAGTAATCTGTGGTTAAAGAAAAGATGGTACGGTTATTTTCTTC
AACAATCGAATCtttaaaagtgtttaaaaacGTTTTGAAGCAGCGTGTGC
TTTTCCCATTTTTCACAAATTGAAGGAAATTGTTTATCTGTAGCTCGTTT
CCCGCTCTATGACCTTAACATTGTgtgtgaaagaaaattttttcttggtG
GCATCCTGCTCGACAAAACTCAATTTAGGGACTATTTACGGCCCAAAAAA
TCACGTATTTCAATCGTCATCTCCGCTTGCCTTCAAAAGCCCCAACTGTG
CCattattcaaaacttttttggttttaattttgataTGATAATAATAAAG
TAACAACGATCTCGCTCTCTCATTCTTTCATTGAATGCAAATCAAACGCC
GATATCAAAAGACAAATTTGACATGGCTTGTGAATCTAGTTATGTTCCAT
AGTATTAATATCTAGACGTTAATTGATAAGAaacaaatttcttgattttt
tactCGGGGTGTAAAATCAACAAGTGATCGACTTTCCGCAAAATCATTTC
TGAGTGAGTTGATATGACAATAATTTGTTTTATATTAAAATCTACTAAGT
CATGTAGTGAAGTGGTTAAAAGTGTATAATTGAAAAGGATATATCAGACA
TCAAAAGTGACAATTACTACTCTAAAACAAACTTTACAATCGATTAAACt
tcaataaaatcataaaaagtcTAAAAGTCATTTTTCTGTTCTGTCTAACT
TTTAGGTGTTTATTCGACGAGGAAACAGAGAAACAATGGCGGATCACAAC
TCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAACCAGTCAAATATGTGG
CGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCATGGTGTACGTTCTAT
TCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAAGACAAGACTTATTTT
ACGATCGCTGGATGTCTCGGTATCGCAGATTGTATGTGTCTCTTCCTAAT
GATTGGATACGCTTCCCCTTGTCTATTTTACCGAACAAGTCTAAGCAACA
GTCTCGCGTTGGGTGGCGTATTGAACATTGGATGGTTCAGCGGACTACCA
CTACTCATCTTTCTAGCTGGTGATCGATATTTGTGCATCTGTAACAAAGA
TTTGTACAGCAGGTTTTACAAGAAACGTTTGACGAACATGTACTGTATAG
GATGTTGGGTGTTTGGTATTGCTTATTCCATCCCCTCCTTCTTCCCATGC
TGTTCTCTACATTTCGATTACACCTTGATGTCATGGGGCTGGAGTATAGA
CTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAATAACCATGGTAGTCA
TCATCACATCAATCACTTACTTCCTCAACGGCCTCGttttcaggtaaaaa
aaattatgttacgTTTTAAACTACGAATAGTTTCTTTCATCTGATTAAAT
ACCATCAGCCAGTCAAATAATAACACTTTCTCTTCACCAAAACATATTCC
GAGGTTATTGTTCGTTTATGGTTGCAAGGGATCGAAAAGTTCCCTTGACA
AATCAGTCTGATATGGAACTCCAGAATTCCATTTAATCCGTGTTTTTTCC
TCCAGAAGTAGTTCaaacatattctttttgtttacgTTTCAGAGCACTTC
GAGAAGCTCAACGTAACACGTCTTTAGACGCCGTACACGAGCAGCGTAAG
AGCGCACGTGAACGTAAAGTGTTTATCCAATTCTTCATCACCACTATTTG
GTTGGTGGTGTTTGATGTACCCTTCATCACGATCGGTTACATTGAGAACC
CGTCACACTGGTTGGGTTATTTCGTCACGTTAGCTTACACCATCAATTGC
TCCATCAATGGATGGGTTTATTGCTTCATGAACAAAACTGTCAAACGTGA
GATCCGAGAGATCTGTCGGCGTGGATATCGGATACGTGCAGATACGGAAA
TGAGTGATCAAGGTCGCAAAACTATCGTTAGACAACGAAAGGATACTAAA
AAATCTGAGGTGGAAAATTTCCGTTTAAAACAAGGCAACACTTCATCCGC
ATAGGGTGGATACCATCCTTAATTAAGAGAGGGTTTTGAAAAACTTGTGA
ATTTATTTGTATATTGATTTTAGCATTGAACACATCTTTTTATTGTTTAG
TtactttttttacaaattgTATATATGCGTGCGTGTGTTAAAATGCAAGG
TTTGTCAAAAACTGtttattggaaattttcatGATATCTAAAAGTCATGT
TGGTGTTTGGAGTGACCGTTTGAGAGTCTCTTTCTCAGTCTTTCTGGTAG
GCTAACCTCAGAAATTTGCATTCGATTTCTCTTCCCTCCAATTAATAAGG
AAATTGCCTGGATTTCTCTCGTTTATAAAACTCTTGAAACAAATATCACC
TAACaacatttttgaccatttttcttgTGTTATTAATTGAATTTTTCGTT
GTCATTGGCAACGAAGATGGTAGAATGTTCGAATAATGTAATTGTGGTAC
TTCCCAATAAAAAGTTGATGTTTGAGTGATGTCGTGTGTCATTTGCACCA
ATTCACCAGGCGTGGGTAAAGTGAGGTAATATTTAGCTGTTGGATGGTTT
ATTGAATGATAACTTTCATAAGTGTTGTAGAACTCTGGTGTAAAACACTC
CACAAAGACACAATCACGACCTTCTGTCTCCTGAAAATATATAAG Coding sequence (CDS) from alignment at sc0000007:477953..481297+ >TCONS_00000996 ID=TCONS_00000996|Name=TCONS_00000996|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0000007:477953..481297+ (Clytia hemisphaerica)
ATGGCGGATCACAACTCAACGGCGGTAGATCTGGCCTTCTCGTTAGAAAC
CAGTCAAATATGTGGCGCCTTTCTACTCATCGTTTCGTTGTTCGGTCTCA
TGGTGTACGTTCTATTCATGTTCGTCGTGTTCACACGTCCTAAGTTTAAA
GACAAGACTTATTTTACGATCGCTGGATGTCTCGGTATCGCAGATTGTAT
GTGTCTCTTCCTAATGATTGGATACGCTTCCCCTTGTCTATTTTACCGAA
CAAGTCTAAGCAACAGTCTCGCGTTGGGTGGCGTATTGAACATTGGATGG
TTCAGCGGACTACCACTACTCATCTTTCTAGCTGGTGATCGATATTTGTG
CATCTGTAACAAAGATTTGTACAGCAGGTTTTACAAGAAACGTTTGACGA
ACATGTACTGTATAGGATGTTGGGTGTTTGGTATTGCTTATTCCATCCCC
TCCTTCTTCCCATGCTGTTCTCTACATTTCGATTACACCTTGATGTCATG
GGGCTGGAGTATAGACTTCGATGGCGCCAAAACATTAGCTTTGGGTGAAA
TAACCATGGTAGTCATCATCACATCAATCACTTACTTCCTCAACGGCCTC
GttttcagAGCACTTCGAGAAGCTCAACGTAACACGTCTTTAGACGCCGT
ACACGAGCAGCGTAAGAGCGCACGTGAACGTAAAGTGTTTATCCAATTCT
TCATCACCACTATTTGGTTGGTGGTGTTTGATGTACCCTTCATCACGATC
GGTTACATTGAGAACCCGTCACACTGGTTGGGTTATTTCGTCACGTTAGC
TTACACCATCAATTGCTCCATCAATGGATGGGTTTATTGCTTCATGAACA
AAACTGTCAAACGTGAGATCCGAGAGATCTGTCGGCGTGGATATCGGATA
CGTGCAGATACGGAAATGAGTGATCAAGGTCGCAAAACTATCGTTAGACA
ACGAAAGGATACTAAAAAATCTGAGGTGGAAAATTTCCGTTTAAAACAAG
GCAACACTTCATCCGCATAGATGGCGGATCACAACTCAACGGCGGTAGAT
CTGGCCTTCTCGTTAGAAACCAGTCAAATATGTGGCGCCTTTCTACTCAT
CGTTTCGTTGTTCGGTCTCATGGTGTACGTTCTATTCATGTTCGTCGTGT
TCACACGTCCTAAGTTTAAAGACAAGACTTATTTTACGATCGCTGGATGT
CTCGGTATCGCAGATTGTATGTGTCTCTTCCTAATGATTGGATACGCTTC
CCCTTGTCTATTTTACCGAACAAGTCTAAGCAACAGTCTCGCGTTGGGTG
GCGTATTGAACATTGGATGGTTCAGCGGACTACCACTACTCATCTTTCTA
GCTGGTGATCGATATTTGTGCATCTGTAACAAAGATTTGTACAGCAGGTT
TTACAAGAAACGTTTGACGAACATGTACTGTATAGGATGTTGGGTGTTTG
GTATTGCTTATTCCATCCCCTCCTTCTTCCCATGCTGTTCTCTACATTTC
GATTACACCTTGATGTCATGGGGCTGGAGTATAGACTTCGATGGCGCCAA
AACATTAGCTTTGGGTGAAATAACCATGGTAGTCATCATCACATCAATCA
CTTACTTCCTCAACGGCCTCGttttcagAGCACTTCGAGAAGCTCAACGT
AACACGTCTTTAGACGCCGTACACGAGCAGCGTAAGAGCGCACGTGAACG
TAAAGTGTTTATCCAATTCTTCATCACCACTATTTGGTTGGTGGTGTTTG
ATGTACCCTTCATCACGATCGGTTACATTGAGAACCCGTCACACTGGTTG
GGTTATTTCGTCACGTTAGCTTACACCATCAATTGCTCCATCAATGGATG
GGTTTATTGCTTCATGAACAAAACTGTCAAACGTGAGATCCGAGAGATCT
GTCGGCGTGGATATCGGATACGTGCAGATACGGAAATGAGTGATCAAGGT
CGCAAAACTATCGTTAGACAACGAAAGGATACTAAAAAATCTGAGGTGGA
AAATTTCCGTTTAAAACAAGGCAACACTTCATCCGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000996-exon-sc0000007-1491911889:477953..478051 | TCONS_00000996-exon-sc0000007-1491911889:477953..478051 | Clytia hemisphaerica | exon |
| TCONS_00000996-exon-sc0000007-1510915933:477953..478051 | TCONS_00000996-exon-sc0000007-1510915933:477953..478051 | Clytia hemisphaerica | exon |
| TCONS_00000996-exon-sc0000007-1575043694:477953..478051 | TCONS_00000996-exon-sc0000007-1575043694:477953..478051 | Clytia hemisphaerica | exon |
| TCONS_00000996-exon-sc0000007-1491911889:479358..479995 | TCONS_00000996-exon-sc0000007-1491911889:479358..479995 | Clytia hemisphaerica | exon |
| TCONS_00000996-exon-sc0000007-1510915933:479358..479995 | TCONS_00000996-exon-sc0000007-1510915933:479358..479995 | Clytia hemisphaerica | exon |
| TCONS_00000996-exon-sc0000007-1575043694:479358..479995 | TCONS_00000996-exon-sc0000007-1575043694:479358..479995 | Clytia hemisphaerica | exon |
| TCONS_00000996-exon-sc0000007-1491911889:480245..481297 | TCONS_00000996-exon-sc0000007-1491911889:480245..481297 | Clytia hemisphaerica | exon |
| TCONS_00000996-exon-sc0000007-1510915933:480245..481297 | TCONS_00000996-exon-sc0000007-1510915933:480245..481297 | Clytia hemisphaerica | exon |
| TCONS_00000996-exon-sc0000007-1575043694:480245..481297 | TCONS_00000996-exon-sc0000007-1575043694:480245..481297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:477953..481297 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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