TCONS_00001019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001019
Unique NameTCONS_00001019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001019 ID=TCONS_00001019|Name=TCONS_00001019|organism=Clytia hemisphaerica|type=transcript|length=2531bp
AAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCTTGAGA
TAAATCATTGACTGTGACTGATACAACACAATACACATATACACCAATCA
ATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATCATGGG
CCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAAATATG
AAAGGGAAAAGCGTCAATATGAGAGGGAACAGGCATACAAGTCTGGTGCA
TTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCGTCCAT
TCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATG
ATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCA
CCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGA
AGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTG
TGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGAACCAGTAGATGAC
ATTGATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATT
ACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCAGCTGCTGATATGG
AGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACA
CCACCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAA
AGAACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGG
AAGATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCA
GCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCC
TGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTGAAGGCTCCTACAG
AAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAA
CAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCC
AGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAG
CTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGTTGAGGAGCTAGCT
ACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTGAGGAGCCAGCTAC
CCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCC
CAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCA
GTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGT
CGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTCG
TTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTT
GAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGA
GGAGCCAGCTGCCCCAGTTGTCGAGGAAACATCTATTGAGGAAACAAGTC
TTGATGAAGAACCAGCAGTTAATGATGAAAAAGAACCTGAAGTTGTTCTT
CTGAAAGCTGAAGAAGTGGGGGATGCTGATGAACTTCCTGTAATGAAAGT
TGAGGAAGTCGGACAGTCTGATGAAGCAGCTGATAAAACTGAGAACACTT
TGTTAGATGCAACGAATGTTTCTCCAATGCCAGAACCGGAAGAGTTCGAC
GATAACCCTACATATTTCATAAAAGTTACTGAGGCTAAATAAATCCAAAC
GAacatttttaagtatttttaaaGCTTTACTATGCAAAATAGAAATTTCT
AGTTTTATACAGAGTATATATTGATAACTTCTTTAAAGTTTCAGGCCGTT
TTTTGAATTTGGAATGTATGAGAAAGTTATCGGTAGTTTtccttttcctg
aatttttgtaacagagaattttcttttcatttgccATTTTTCGTGAATCA
GTTTTCGAGGTATTTGTAACAATGTTTTAGTATTTGTTTTTATCCTTTGA
ACTTTGTCATGGTAGGATGTTTTTAACATACCGTATcagtaaattatttt
tttagtatCATGTATTTATTAGTATTTTCATGTTCAGTTCCCTCGATTTT
CGCTAGTAGTTttcattttaattctttttccgatggttttttttggtcct
tttttTCAACAACGCAGAGGCTTTATTGGAGTCGAACAGAATATCGTCTC
TATGCGagttcttgaaatttttttcaattactCTAACCTTGACCCCGAAA
CGGGTTTTATCGAGGGTGAGTATTGTTTTACgttgatttttttaaagtta
gtGATTCGCGAGAATTAGTCCTGTCGGTACAAAGGGATTTACGTATATTT
TACATACGAAGCTCATTTGTAATACGGTATTTTCAGCTCATTTCTTTCAA
TTAATATAAAAATCATGATCAATTTTGTACATCTTCGCCTATCGATCTCA
TTGTTGATATTGTTTTTCCAGATGATTCGAT
Run BLAST on NCBI

transcript from alignment at sc0000007:745667..751470+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001019 ID=TCONS_00001019|Name=TCONS_00001019|organism=Clytia hemisphaerica|type=transcript|length=5804bp|location=Sequence derived from alignment at sc0000007:745667..751470+ (Clytia hemisphaerica)
AAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCTTGAGA
TAAATCATTGACTGTGACTGATACAACACAATACACATATACACCAATCA
ATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATCATGGG
CCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAAATATG
AAAGGGAAAAGCGTCAATATGAGAGGGAACAGGTAAATGACCtatgtttg
aaaatttcaacatcaaaCTTCCAGACATTGGggtttttttattattctta
ATATCATttcatatctttttaaatcATAGGTAATCTTATTATTGTAGTAT
TGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTTACTTT
TATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTTTTGAG
ATTACACAACAAGACGCTTCCAaatgtattttgtttttattttattgtaa
tAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTTCAGTG
TGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTAAAGAG
GCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAGTACTT
AATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAATTTCT
TTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaaacatt
ttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGACACCA
CATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGTTTCCT
TTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAGTCTGG
TGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCGG
TTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTTACGAT
CACCATAAACGAGACAGCACTTCTAAAGCAATATAAAGggaaaataatag
aaatttagaatataatttttttttctcattaaaaCATGACATTGCTTCCA
GTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGCATGTT
ACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCATCCTA
CTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATACTGAT
GCACCTAAAGTAGACTCTCCTGTCGAANCTTATTATTCTTAATATCATtt
catatctttttaaatcATAGGTTATCTTATTATTGTAGTATTCTGTAGTA
TTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTTACTT
TTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTTTTGA
GATTACACAACAAGACGCTTCCAaatgtattttgtttttattttattgta
atAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTTCAGT
GTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTAAAGA
GGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAGTACT
TAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAATTTC
TTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaaacat
tttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGACACC
ACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGTTTCC
TTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAGTCTG
GTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCG
GTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTTACGA
TCACCAAAAACGAGACAGCACTTTTAAAGCAATATAAAGggaaaataata
gaaatttagaatataaattttttttctcattaaaaCATGACATGCTTCCA
GTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGCATGTT
ACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCATCCTA
CTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATACTGAT
GCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCACCGGAAAG
TGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGAAGATGTCA
AGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTGTGGTATTA
GTTAGTGCTTCAAGTAGTGAAGCTGGTGAACCAGTAGATGACATTGATGA
AGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATTACTGGCTG
AACGAGAAGAATCTTCTGATGTTTCCCAAGCTGCTGATATGGAGGATCGC
CCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACACCACCTCA
ATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAAAGAACTTG
ATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGGAAGATACA
ATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCAGCACCAAT
TCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCCTGCTCTTC
CAGTTGTTGAAGAAGTTGTTCCAGTAGTAAAGGCTCCTACAGAAGAGGCT
GCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAACAGGCTGC
CCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCCAGCTGCTC
TAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAGCTACCCCA
GTCATTGAGGAGCCAGGTACTCCTGTCGTTGAGGAGCTAGCTACTCCTGT
CGTTGAGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCTCA
TTAAAACATGACATGCTTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCT
TTCTACACAACTTTGCATGTTACATTTCATTAACTGATTCTCGTGAATTG
ATTTTTAGTCCATTCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAA
CTGGAGCAAGATGATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAAC
TAGCACTCCTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAG
AAACTTACTCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCG
GAAAGCACAACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGA
ACCAGTAGATGACATTGATGAAGTACCAAAAGAGAAACCTGTATTACCAC
TCACACCTGAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCA
GCTGCTGATATGGAGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAA
CACAGAAGATACACCACCTCAATCACCACACTATGTTAATCTTCAAACTC
TATCTTCTCAAAAAGAACTTGATGATATTCCAATTGAAACTGAACCGGTT
TCAGATACAGAGGAAGATACAATCGAAGACCTCCCACCTCCACCAACTAT
TCCACCTCCAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAAC
CTACTGAGGAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTG
AAGGCTCCTACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCC
AGTTGTTAAGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAG
TTGTTGAGGAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTT
GTTGAGGAGCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGT
TGAGGAGCTAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTG
AGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAG
GAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGA
ACCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAAC
CAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCA
GCTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAAGCAGC
TACCCCAGTTGTTGAGGAACCAGCTACCCCAGTTATTGAGGAGCCAGCCA
CCCCGGTTATTGAGGAGCCAGCCACCCCGGTTGTTGAGGAGCCAGCCACC
CCGGTTGTTGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAGCTACCCC
AGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAGCCAGCTACCCCAG
TTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAGCCAGCTACCCCAGTC
GTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGT
TGAGGAGCCAACTACCCCAGTCGTTGAGGAACCAACTACCCCAGTCGTTG
AGGAGCCAACTACCCCAGTTGTTGAGGAGCCAACTACCCCAGTCGTTGAG
GAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTGCCCCAGTTGTCGAGGA
AACATCTATTGAGGAAACAAGTCTTGATGAAGAACCAGCAGTTAATGATG
AAAAAGAACCTGAAGTTGTTCTTCTGAAAGCTGAAGAAGTGGGGGATGCT
GATGAACTTCCTGTAATGAAAGTTGAGGAAGTCGGACAGTCTGATGAAGC
AGCTGATAAAACTGAGAACACTTTGTTAGATGCAACGAATGTTTCTCCAA
TGCCAGAACCGGAAGAGTTCGACGATAACCCTACATATTTCATAAAAGTT
ACTGAGGCTAAATAAATCCAAACGAacatttttaagtatttttaaaGCTT
TACTATGCAAAATAGAAATTTCTAGTTTTATACAGAGTATATATTGATAA
CTTCTTTAAAGTTTCAGGCCGTTTTTTGAATTTGGAATGTATGAGAAAGT
TATCGGTAGTTTtccttttcctgaatttttgtaacagagaattttctttt
catttgccATTTTTCGTGAATCAGTTTTCGAGGTATTTGTAACAATGTTT
TAGTATTTGTTTTTATCCTTTGAACTTTGTCATGGTAGGATGTTTTTAAC
ATACCGTATcagtaaattatttttttagtatCATGTATTTATTAGTATTT
TCATGTTCAGTTCCCTCGATTTTCGCTAGTAGTTttcattttaattcttt
ttccgatggttttttttggtccttttttTCAACAACGCAGAGGCTTTATT
GGAGTCGAACAGAATATCGTCTCTATGCGagttcttgaaatttttttcaa
ttactCTAACCTTGACCCCGAAACGGGTTTTATCGAGGGTGAGTATTGTT
TTACgttgatttttttaaagttagtGATTCGCGAGAATTAGTCCTGTCGG
TACAAAGGGATTTACGTATATTTTACATACGAAGCTCATTTGTAATACGG
TATTTTCAGCTCATTTCTTTCAATTAATATAAAAATCATGATCAATTTTG
TACATCTTCGCCTATCGATCTCATTGTTGATATTGTTTTTCCAGATGATT
CGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000585XLOC_000585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001019-exon-sc0000007-1491911889:745667..745898TCONS_00001019-exon-sc0000007-1491911889:745667..745898Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1510915933:745667..745898TCONS_00001019-exon-sc0000007-1510915933:745667..745898Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1575043694:745667..745898TCONS_00001019-exon-sc0000007-1575043694:745667..745898Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1491911889:746553..746615TCONS_00001019-exon-sc0000007-1491911889:746553..746615Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1510915933:746553..746615TCONS_00001019-exon-sc0000007-1510915933:746553..746615Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1575043694:746553..746615TCONS_00001019-exon-sc0000007-1575043694:746553..746615Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1491911889:748875..750011TCONS_00001019-exon-sc0000007-1491911889:748875..750011Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1510915933:748875..750011TCONS_00001019-exon-sc0000007-1510915933:748875..750011Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1575043694:748875..750011TCONS_00001019-exon-sc0000007-1575043694:748875..750011Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1491911889:750372..751470TCONS_00001019-exon-sc0000007-1491911889:750372..751470Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1510915933:750372..751470TCONS_00001019-exon-sc0000007-1510915933:750372..751470Clytia hemisphaericaexon
TCONS_00001019-exon-sc0000007-1575043694:750372..751470TCONS_00001019-exon-sc0000007-1575043694:750372..751470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:745667..751470 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.908901	0	0.791399	0.631132	1.07058	0.383785	1.57528	2.25912	2.19676	1.12333	2.14676	1.66806	2.7062	0.603581	0.823257	0	0	0.183595	0	0.452966	0.387594	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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