Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001022 ID=TCONS_00001022|Name=TCONS_00001022|organism=Clytia hemisphaerica|type=transcript|length=2452bpRun BLAST on NCBI transcript from alignment at sc0000007:774178..780652+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001022 ID=TCONS_00001022|Name=TCONS_00001022|organism=Clytia hemisphaerica|type=transcript|length=6475bp|location=Sequence derived from alignment at sc0000007:774178..780652+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00001022 vs. Swiss-Prot (Human)
Match: ACOC (Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3) HSP 1 Score: 922.539 bits (2383), Expect = 0.000e+0 Identity = 470/682 (68.91%), Postives = 559/682 (81.96%), Query Frame = 3 Query: 6 HTTMINXXXXXXXXXXXXEAEAVMLGQVISMVVPKVIGYKITGTMNPIATSTDVVLTITKHLRQIGVVGKFVEFFGAGVASLSIADRATISNMCPEYGATVGFFPVDKMSLEYLRQSGRTEEHIKYIEDYMKANNLFRDYTNPEQDPVFTEIVELDLGSVVPSCSGPKRPHDRVPVSEMKTDFRSCLLNKVGFKGFGIVEEKTETIAPFIYEGKEYTLKHGXXXXXXXXXXXXXXXXXVMLGAGLLAKKAIESGLTTLPYIKTSVSPGSGVVTYYLKESGVDKYLEQLGFGIVGYGCMTCIGNSGPLPEAVAEVIEKNDLVVCGVLSGNRNFEGRIHPLTRANYLASPLLVIAYALAGTVDIDFEKEPIGRTEEGKEVFLRDIWPSRQEIQEMERKTVIPALFQEVYSKIQTGNPAWNNLETSASLLYPWESSSTYIQPPPFFNEMTLVVPEVESIANAAVLLNVGDSVTTDHISPAGMISRTSPAARYLGGLGLTPREFNSYGSRRGNYNVMARGTFANIRLVNKFMNKPGPKTKHWPSGDEMDIFDAAERYIKEKRSLIILAGKEYGCGSSRDWAAKGPWMQGIKAVIAESYERIHRSNLIGMGIAPLQYLSGDTTESLGLTGKESFTIEYPENLGAGSMVTVKVDDGRSFQVKARFDTDLEFVYYKNGGILNYMIRKIA 2051 HTTMI+GLGILGWGVGGIEAEAVMLGQ ISMV+P+VIGY++ G +P+ TSTD+VLTITKHLRQ+GVVGKFVEFFG GVA LSIADRATI+NMCPEYGAT FFPVD++S+ YL Q+GR EE +KYI+ Y++A +FRD+ +P QDP FT++VELDL +VVP CSGPKRP D+V VS+MK DF SCL K GFKGF + E FIY+ E+TL HGSVVI++ITSCTNTSNPSVMLGAGLLAKKA+++GL +PYIKTS+SPGSGVVTYYL+ESGV YL QLGF +VGYGCMTCIGNSGPLPE V E I + DLV GVLSGNRNFEGR+HP TRANYLASP LVIAYA+AGT+ IDFEKEP+G +G++VFL+DIWP+R EIQ +ER+ VIP +F+EVY KI+T N +WN L T + L+ W S STYI+ PPFF +TL + +SI +A VLLN+GDSVTTDHISPAG I+R SPAARYL GLTPREFNSYGSRRGN VMARGTFANIRL+N+F+NK P+T H PSG+ +D+FDAAERY + LI+LAGKEYG GSSRDWAAKGP++ GIKAV+AESYERIHRSNL+GMG+ PL+YL G+ ++LGLTG+E +TI PENL V VK+D G++FQ RFDTD+E Y+ NGGILNYMIRK+A Sbjct: 207 HTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 888 The following BLAST results are available for this feature:
BLAST of TCONS_00001022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|