TCONS_00001058 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001058
Unique Name	TCONS_00001058
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1976

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000007:1112382..1116755+

transcript sequence

>TCONS_00001058 ID=TCONS_00001058|Name=TCONS_00001058|organism=Clytia hemisphaerica|type=transcript|length=1976bp
CGAAAACTATgaaaaattacctaaattttgagccatagatgaaaaaattt
gacctGACCCAACCTGaaccaaccttgaaaactaatttgaagaacaGCTT
CCAAAGAAAAAGATCAATGAGAGAACACCCATTTATATGTGtgggaattt
tttttactttacgtGTAATTAAAGCCTAACAAATCAAAGCGCTATCTTGG
GAatcaaaatgacaaattttggttggttgattttggctgctgcacaaata
ttttgtttcaagctttcaagttttaattatatATAACTGTCTTTGGAACT
TGATTGAGGTAACTCTCTTCTTTGATGCTGCAAATaaatcctgtagatga
ctgatgttgtttttattgatagcttgatttcctagtttGACTAACTGACA
AGTAGTCATTATCTTTTGTTGGCAAAGGAAGGTCGACGTTTGAAAATACT
TTATCATGCAGACTGAAGACACTTCTCCTATGGACAAAAAACATGTTGTA
AGAGACATTGTAAGGCTACATATCGGTGTCAGACACAAAGAACTTACTTA
AAAATAATAGAGATGCTCAAAATTGAGACACAGGTAAATTCCAAAAGAAA
TAACCATCATTGCTCTGAAAATGATCATAAAATAAATTGGgggttgaaaa
aaattaaaagatgtTAAATCTCTCTAATGTAGCTAAACATAAATCTTGCA
ATCCAAGCCACAATAATCTTCCAACGTGAATATCACTGAGTCAATAAACA
CAACaatttatttagatattatatgAACTTTTTAAAACACTTTAAACTTT
AGAGTTAAGGAAAAATCACCTACAATTAAAATAATTCTTTCCTTTTTTAG
GGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTACAAAA
AGTTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGTTTCATCC
AGCAATTCTTCACTTGGTGTTAGAAGAACACAGACTTTTAAAGCAAAGTC
ACAAAACACTGcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAACCA
AATTGATAGAAGCTAGAAGTTTGTCAACACAAGCCTCGTCCAGCTCCACA
TCCTCCAAGCCCGTTGTTTATACAGATGGTTGCTGCCGTGGTAACGGTAG
AAGTGGAGCCATCGGTGGAATCGGTGTTTATTGGGGACCAGATCATCCTA
GgaatATAAGTGAACCGTTACTAGTAGACGAGCCAACTAACCAGAAAGCT
GAACTGGAGGCCGCCATCAGAGCGATTGATTGTGCGATAGGAATGGGTCT
GGATGATCTTGAATTACGAACAGATAGTACATACACCATCAAATCAATGA
CGGAATGGATTCCACGTTGGGAGCGGAACGGATGGAAAACTTCCAAAGGA
ACTGATGTTCTGAACAAAGAACAAATGATCCGGTTGAACGATTTATGTAA
ACGGATTGATATAAAATGGACGCACGTTCGCGGACACAAAGGTATCCATG
GCAACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAACTTGA
AAACGAAGCGTGGTTGTAAAACGGCGACTAACGAACGTGGGATTTTCCTT
AGTGTCACTCATGGTGTAATGTTGGAAATTCTGTCaaattccaaataaat
aaatgaagaaGGACTCGCCTACTTTCAGTTATGTTACCTGACAGCTTCAA
ATGACAATGTTAAAGacaatttaaacagtattactTGTAAAAGGACATTA
CAGTGTGCCCGAAAGAAAATGGGACGGATTTTATAAATTTAGTatcttta
tttatttaaattttgttcGACTTACCTACCTAGAAACACTGTAGTTTTTG
TTAATGTTTACCATTTGCAATACGGTGTTTTGTCCTCGTTGTGGACAATT
GTATATCATCCACAAATGCTCTGCtgagaaagaaaaacttttaaataaca
ATAATATAGGAACTTTAGCATCATCG

Run BLAST on NCBI

transcript from alignment at sc0000007:1112382..1116755+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001058 ID=TCONS_00001058|Name=TCONS_00001058|organism=Clytia hemisphaerica|type=transcript|length=4374bp|location=Sequence derived from alignment at sc0000007:1112382..1116755+ (Clytia hemisphaerica)
CGAAAACTATgaaaaattacctaaattttgagccatagatgaaaaaattt
gacctGACCCAACCTGaaccaaccttgaaaactaatttgaagaacaGCTT
CCAAAGAAAAAGATCAATGAGAGAACACCCATTTATATGTGtgggaattt
tttttactttacgtGTAATTAAAGCCTAACAAATCAAAGCGCTATCTTGG
GAatcaaaatgacaaattttggttggttgattttggctgctgcacaaata
ttttgtttcaagctttcaagttttaattatatATAACTGTCTTTGGAACT
TGATTGAGGTAACTCTCTTCTTTGATGCTGCAAATaaatcctgtagatga
ctgatgttgtttttattgatagcttgatttcctagtttGACTAACTGACA
AGTAGTCATTATCTTTTGTTGGCAAAGGAAGGTCGACGTTTGAAAATACT
TTATCATGCAGACTGAAGACACTTCTCCTATGGACAAAAAACATGTTGTA
AGAGACATTGTAAGGCTACATATCGGTGTCAGACACAAAGAACTTACTTA
AAAATAATAGAGATGCTCAAAATTGAGACACAGGTAAATTCCAAAAGAAA
TAACCATCATTGCTCTGAAAATGATCATAAAATAAATTGGgggttgaaaa
aaattaaaagatgtTAAATCTCTCTAATGTAGCTAAACATAAATCTTGCA
ATCCAAGCCACAATAATCTTCCAACGTGAATATCACTGAGTCAATAAACA
CAACaatttatttagatattatatgAACTTTTTAAAACACTTTAAACTTT
AGAGTTAAGGAAAAATCACCTACAATTAAAATAATTCTTTCCTTTTTTAG
GGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTACAAAA
AGTTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGTGACGAAT
TAAACTAAAACCTCTTTTTATCAGGGAGGCtcttgatattttttaaatta
taacTGACTACTTGATAATTGAGTTGCTATTAGTGGGGTTACAGGTTTTG
AACTTGTTTTGAAGGTTGTGGAGAGGAACAAGGGGTTATTTAAAGCTCAA
AGGAATTCTTTATTTTaaatagatttaaaaagatatGTCATATTAAAATA
CTCCTTTTCAAAGGTTTCATCCAGCAATTCTTCACTTGGTGTTAGAAGAA
CACAGACTTTTAAAGCAAAGTCACAAAACACTGGTAAGAATTTTCTCCTC
CATACATCTGTTGATAGTTCTGTTGGTATGCTCAAGAGAAACATTGTAGC
AAAGGTTTGGCATGctatcttctcaaaaatattagAAAGTTATAtcttga
tgggttaaaatcaaccttcttcccaaatATAATTTTCGCTGTcgaagaat
tcttattcagttGCTCTTCATAACTTTCTGTTTACGATAGCGGCTTCCtg
tcactttcaaaacttttcaaagtcttcCAAAGTCACACTCGAATGTCCAG
CCACGATGGCCAGCCACGATGGCTAAATAGATCTTATTTATAATTCTTCT
AAGCCATTTacttaattgtggttaaaaattgcaataCAATGTTATCTTCT
TTCTCCTTTCTTTCATAGAATGAAAATCGTATCATTATTTCGGCAGCTAT
CTTTTTTCCTTTAGAGTTTTTTATATGTATAGTGATTCGCTGGATTGGGA
CATGCAGCGTGCAACACTGCGCATACGGCTATAGATAATGcttctttcaa
attcaatttgtGTTCTACACCATTATATGTAATGTCTTTACAATAGTACA
TAATATTatgaattgaaagaaaaataatcacaatcaaattttatttttta
gcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAACCAAATGTAGGTA
CTCAAAAAATTTGCATTCCCTATAAGGATACCCTTATTAAGCTCGACcaa
tatatataaaaataaaaattagaaaatatttaGATGTTGGAATATTTGAA
TATTTAGTTGGGATTTCTTCGTTCATGACTATACAATAAGTAGCtaattt
taaagctattttctcCTTTCAGTGATAGAAGCTAGAAGTTTGTCAACACA
AGCCTCGTCCAGCTCCACATCCTCCAAGCCCGTTGTTTATACAGATGGTT
GCTGCCGTGGTAACGGTAGAAGTGGAGCCATCGGTGGAATCGGTGTTTAT
TGGGGACCAGATCATCCTAGGTACGCAATAATGTGATAATATTTTGGTTG
AATGTATCCAGGAGTTGATTCTTTGCGTTTGTTTTGTTACCATATCGTGT
TTTGTGTTGACATTTAAAAATAAACTATTTCCTTTTCTTAGGGGtttcct
tttttgatttttttcaggaatATAAGTGAACCGTTACTAGTAGACGAGCC
AACTAACCAGAAAGCTGAACTGGAGGTTAGATGAGTACTGACATTATTTA
ATTCACGAATAGACCTTGTTCTCCACGTCAATGTGTAGAAATCATTATTT
CAATGGATATGGCgatgtcaatattttttataggggtcagtagcgtagac
aggcgTGAAGGAACAATTgcttaggagagcagatttttacgaCGAAGCAC
TTACCTACCActtacttgtggtataaaaacaTAGTTACTGTGCTGTTTAA
ATCTCCTCTCCTAAACAAATATTCCTTCatccctgtctacgctactagGG
GTAATTAATTGTTTGATTGCATGATAAATTGCGTGGTGGATTTTAATCGT
AGCTGTTTAGAACATGCGGATCTTCACACTCCCCTGTATGTATGAGAAAG
GAGTTGTCAGCCCAAGTCCGCCATAACTTTTCAGGCTTTAAGCTTTTAGG
GGGTTAACAAAGTTTAAGTTAAAACATGTAGTATATCTGATATTGGTTAC
AGAATGTGGTATCTTCTAACATAAATGTCAATGCAATGAGTCGGGGGTTT
TTATAGGGAGATTAGGGAGGCTTTTCACACTATGGCTGTTATATAATATT
CCATTACTTTGTATCCTTCTTTTGCAATATCCAGGCCGCCATCAGAGCGA
TTGATTGTGCGATAGGAATGGGTCTGGATGATCTTGAATTACGAACAGAT
AGTACATACACCATCAAATGTAAGAAAATCTCATCATATTTATGACAGTG
AAAGTCCTTATGAATTGCTTCAAACTCATCAAAACTCAATCTCAAATTGT
TGCTGCTAAATTGTACCACGTTGATCTCGACATCATAAGGTAGTATGAAA
CACCTTAAGatattgataatttgataaGCTGTAGACCTTTGGTTTAACAA
ATGGTATAGACTTCTTCAAAAGTACAAAGGTTTTGTATCTCTTCTTTCCA
GCAATGACGGAATGGATTCCACGTTGGGAGCGGAACGGATGGAAAACTTC
CAAAGGAACTGATGTTCTGAACAAAGAACAAATGATCCGGTTGAACGATT
TATGTAAACGGATTGATATAAAATGGGTGAGGAGTTTTgcataaaaacaa
ttattctacaaaaattcaaaattccaaAGGGGTTTAAACCTGCATTTCCA
GCCACACAGGGATGGACCTcatcaacagggggtatacggtttttttctgg
NGGgtttacagcatttccagccacacagtgatggacctcctcaacagggg
tatacgttttttttctgcaaaagcccaagttgaaaaattgaaagaaccAG
GACTCTTGGCATGATGCTTGGGTTCAGTTGCACACCCTTtcgatttcctt
ttttttaatcaaaaagcCCTGACCAGGACTTATTAGGACCTCCTATTAGC
TAACTTTGAAGCAGATTCACACTATTTTTATGGTTCGTTTGCTGACTTTA
ATACACCGTTCATTTAGACGCACGTTCGCGGACACAAAGGTATCCATGGC
AACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAACTTGAAA
ACGAAGCGTGGTTGTAAAACGGCGACTAACGAACGTGGGATTTTCCTTAG
TGTCACTCATGGTGTAATGTTGGAAATTCTGTCaaattccaaataaataa
atgaagaaGGACTCGCCTACTTTCAGTTATGTTACCTGACAGCTTCAAAT
GACAATGTTAAAGacaatttaaacagtattactTGTAAAAGGACATTACA
GTGTGCCCGAAAGAAAATGGGACGGATTTTATAAATTTAGTatctttatt
tatttaaattttgttcGACTTACCTACCTAGAAACACTGTAGTTTTTGTT
AATGTTTACCATTTGCAATACGGTGTTTTGTCCTCGTTGTGGACAATTGT
ATATCATCCACAAATGCTCTGCtgagaaagaaaaacttttaaataacaAT
AATATAGGAACTTTAGCATCATCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000598	XLOC_000598	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:1112382..1116755 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.636126	0.723289	0.653499	1.11629	0.566962	0.726081	0.742316	0.849833	0.506988	0.438545	0.436775	1.34908	0.135912	0.449245	0.290227	0.581583	0.674477	0.199515	0.151478	0.705114	0.881473	0.936388	0.454837	0.236871	0.312419	0.33488	0.508838	0.382307	0.302624	0.315632

Blast

[Close]

BLAST of TCONS_00001058 vs. Swiss-Prot (Human)
Match: RNH1 (Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.317e-43
Identity = 100/238 (42.02%), Postives = 134/238 (56.30%), Query Frame = 3

Query:  855 ECESQVKGFHGARYKKFGSEQEAQSFI-----DEVSSSNSSLGVRRTQTFKAKSQNTAFPG----SVTALSKRTKL-IEARXXXXXXXXXXXXXKPVVYTDGCCXXXXXXXXXXXXXVYWGPDHPRNISEPLLVDEPTNQKAELEAAIRAIDCAIGMGLDDLELRTDSTYTIKSMTEWIPRWERNGWKTSKGTDVLNKEQMIRLNDLCKRIDIKWTHVRGHKGIHGNEEADRLANEGA 1538
            EC +QV  F  AR+KKF +E EA +F+      EVS  + +   + ++   +K       G    S    +K  K  +E     ++ + S      VVYTDGCC  NGR     GIGVYWGP HP N+    L    TNQ+AE+ AA +AI+ A    ++ L L TDS +TI  +T W+  W++NGWKTS G +V+NKE  + L  L + +DI+W HV GH G  GNEEADRLA EGA
Sbjct:   45 ECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG-IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGA 281

The following BLAST results are available for this feature:

BLAST of TCONS_00001058 vs. Swiss-Prot (Human)

BLAST of TCONS_00001058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RNH1	4.317e-43	42.02	Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV...	[more]

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TCONS_00001058 (transcript) - C. hemisphaerica