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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001060 ID=TCONS_00001060|Name=TCONS_00001060|organism=Clytia hemisphaerica|type=transcript|length=3223bpRun BLAST on NCBI protein sequence of TCONS_00001060-protein >TCONS_00001060-protein ID=TCONS_00001060-protein|Name=TCONS_00001060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp MADTAEDFKMTDDEARRIKQALKDKEFMDLLVEYAKEISDPENKKKYEEERun BLAST on NCBI transcript from alignment at sc0000007:1166492..1174367+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001060 ID=TCONS_00001060|Name=TCONS_00001060|organism=Clytia hemisphaerica|type=transcript|length=7876bp|location=Sequence derived from alignment at sc0000007:1166492..1174367+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:1166492..1174367+ >TCONS_00001060 ID=TCONS_00001060|Name=TCONS_00001060|organism=Clytia hemisphaerica|type=CDS|length=44778bp|location=Sequence derived from alignment at sc0000007:1166492..1174367+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001060 vs. Swiss-Prot (Human)
Match: KTU (Protein kintoun OS=Homo sapiens GN=DNAAF2 PE=1 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 7.422e-59 Identity = 121/359 (33.70%), Postives = 194/359 (54.04%), Query Frame = 1
Query: 19 ADTAEDFKMTDDEARRIKQALKDKEFMDLLVEYAKEISDPENKKKYEEEIVAMERQRGQDVRLLKPQSGFVIKTVRLSDNMKVFLNICSSPEVKEYELQHVKGG-------ANLSLPHSVSPVREDIDKGGKACIVYDVCFNPKSYDKGMKESNFRQSMVDSAFDTIERQMNIKLDRKNKKFPKLKYKGQARPLIIRPEQQSQQKTSPKDDKNSKTEKDSPLDFRYPDIQKENKATEEKTGKDKESEKCTKRTVIDEGKPVVPKYKIVHRGFFEMTDY--TGGSLSSTTPKELVVEIELPLAKSANGLDLDIFAQQLILDSEKPSYHLDISLPHKVDEDRGKAQFDKSKKVLIVTLPIL 1068
+ + ED ++ +E +R+ A +D EF + +YA+E++DPEN+++YE EI A+ER+RG +VR + P+ G V++T L + F+N+CS+ V + GG ++ SLP+S++P RE + +VYDV F+P + + FRQ + +A + +E+Q +KLDR+N K K KYKG ++R P D + D P ++YP + + + P P+Y +V R ++ DY + S S P ELV+ IELPL +SA L++ + L LDS KP Y L +SLP+ VD+ RGKAQF+K+++ L+VTLP++
Sbjct: 7 SSSLEDLDLSGEEVQRLTSAFQDPEFRRMFSQYAEELTDPENRRRYEAEITALERERGVEVRFVHPEPGHVLRT-SLDGARRCFVNVCSNALVGAPSSRPGSGGDRGAAPGSHWSLPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEGFRQMLDATALEAVEKQFGVKLDRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARP-DGEPKGPLPDFPYPYQYPAAPGPRAPSPPEAAL--------------QPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAALEVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVV 349 The following BLAST results are available for this feature:
BLAST of TCONS_00001060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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