TCONS_00001061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001061
Unique NameTCONS_00001061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001061 ID=TCONS_00001061|Name=TCONS_00001061|organism=Clytia hemisphaerica|type=transcript|length=691bp
CTTAGGAGAAGAATAGAGATGGTCAAATGTCAATGAGTTGTCATCTAATG
ATCATTAGTGTATTGTCACTCAGTAAACAATCTTTTCTCTGCCAAATCCT
TTATAAAGGACCAAGGCTATCAGTAGCAAATCAGATTCGACATTCATTGC
GACAGCGTAGAAGTAAAGATCAAACATAAACAGCACAAATCACACCAATC
GAAATTCACAGGAAAAATGGCATCCAATCAAACACTGGTCATAATGCTTT
TGATCGTTTGCACAATGATCTGCAATACTCATCAAATGCCAGCCAACGAT
AAACATACATGCTTGGGTATGTGTCAACACAACTTTCAACAATGTTTGAT
CAATTCACCAAATTTAGGAGATATCACAAATtgtagaaacaaagaaaaaa
cctGTACTCAAAGTTGCGAGAGGACCAAAACACGAAGCAGAAGATCCGTT
CGATGCAATAACACTTGTGTGGCTGTTATTGCAACCTGTTTCAAAGCTTC
CACTGATGTCAGAGCTTGCATCAAAACAGTACATCCAACCTGTCTGGAGA
GATGCCATTTTTAATTCATCCACCTATTGATATGGTAAAGATTAACTTAT
TTTGAaggatattttatattttttatatatttcattatttatttgtacaa
aattatatttgtaaatttatgaaggaagaaaagaagaagac
Run BLAST on NCBI

protein sequence of TCONS_00001061-protein

>TCONS_00001061-protein ID=TCONS_00001061-protein|Name=TCONS_00001061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MASNQTLVIMLLIVCTMICNTHQMPANDKHTCLGMCQHNFQQCLINSPNL
GDITNCRNKEKTCTQSCERTKTRSRRSVRCNNTCVAVIATCFKASTDVRA
CIKTVHPTCLERCHF
Run BLAST on NCBI

transcript from alignment at sc0000007:1212144..1213033+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001061 ID=TCONS_00001061|Name=TCONS_00001061|organism=Clytia hemisphaerica|type=transcript|length=890bp|location=Sequence derived from alignment at sc0000007:1212144..1213033+ (Clytia hemisphaerica)
CTTAGGAGAAGAATAGAGATGGTCAAATGTCAATGAGTTGTCATCTAATG
ATCATTAGTGTATTGTCACTCAGTAAACAATCTTTTCTCTGCCAAATCCT
TTATAAAGGACCAAGGCTATCAGTAGCAAATCAGATTCGACATTCATTGC
GACAGCGTAGAAGTAAAGATCAAACATAAACAGCACAAATCACACCAATC
GAAATTCACAGGTATGTAAGTTCATAAGTTTACGAACATTTATCTTACTT
TTGTCAATGCTATTTTACTTtgataaaaataccaaaaataaaGAGCCTCC
ATCTTGAATATTCAACTCAAACTTAAAAACTTTCCTCGAAGCAATCATAT
AAAAAGGTAAGCCTTTTACATCTGGAAAAGCAATAAAAACTTAATTTCTC
TTTCATACAGGAAAAATGGCATCCAATCAAACACTGGTCATAATGCTTTT
GATCGTTTGCACAATGATCTGCAATACTCATCAAATGCCAGCCAACGATA
AACATACATGCTTGGGTATGTGTCAACACAACTTTCAACAATGTTTGATC
AATTCACCAAATTTAGGAGATATCACAAATtgtagaaacaaagaaaaaac
ctGTACTCAAAGTTGCGAGAGGACCAAAACACGAAGCAGAAGATCCGTTC
GATGCAATAACACTTGTGTGGCTGTTATTGCAACCTGTTTCAAAGCTTCC
ACTGATGTCAGAGCTTGCATCAAAACAGTACATCCAACCTGTCTGGAGAG
ATGCCATTTTTAATTCATCCACCTATTGATATGGTAAAGATTAACTTATT
TTGAaggatattttatattttttatatatttcattatttatttgtacaaa
attatatttgtaaatttatgaaggaagaaaagaagaagac

Coding sequence (CDS) from alignment at sc0000007:1212144..1213033+

>TCONS_00001061 ID=TCONS_00001061|Name=TCONS_00001061|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000007:1212144..1213033+ (Clytia hemisphaerica)
ATGGCATCCAATCAAACACTGGTCATAATGCTTTTGATCGTTTGCACAAT
GATCTGCAATACTCATCAAATGCCAGCCAACGATAAACATACATGCTTGG
GTATGTGTCAACACAACTTTCAACAATGTTTGATCAATTCACCAAATTTA
GGAGATATCACAAATtgtagaaacaaagaaaaaacctGTACTCAAAGTTG
CGAGAGGACCAAAACACGAAGCAGAAGATCCGTTCGATGCAATAACACTT
GTGTGGCTGTTATTGCAACCTGTTTCAAAGCTTCCACTGATGTCAGAGCT
TGCATCAAAACAGTACATCCAACCTGTCTGGAGAGATGCCATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000601XLOC_000601Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001061-proteinTCONS_00001061-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001061-exon-sc0000007-1491911889:1212144..1212354TCONS_00001061-exon-sc0000007-1491911889:1212144..1212354Clytia hemisphaericaexon
TCONS_00001061-exon-sc0000007-1510915933:1212144..1212354TCONS_00001061-exon-sc0000007-1510915933:1212144..1212354Clytia hemisphaericaexon
TCONS_00001061-exon-sc0000007-1575043694:1212144..1212354TCONS_00001061-exon-sc0000007-1575043694:1212144..1212354Clytia hemisphaericaexon
TCONS_00001061-exon-sc0000007-1491911889:1212554..1213033TCONS_00001061-exon-sc0000007-1491911889:1212554..1213033Clytia hemisphaericaexon
TCONS_00001061-exon-sc0000007-1510915933:1212554..1213033TCONS_00001061-exon-sc0000007-1510915933:1212554..1213033Clytia hemisphaericaexon
TCONS_00001061-exon-sc0000007-1575043694:1212554..1213033TCONS_00001061-exon-sc0000007-1575043694:1212554..1213033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1212144..1213033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147211	0.21533	0.333359	0.16307	0.595565	0.0784372	0	0.177185	0.186077	0.845118	0.223716	0.0980414	10.6717	7.37147	0.459751	2.37721	5.96756	29.3368	62.517	86.4618	1.92148	1.1455	17.7228	3.37598	9.87834	2.25694	44.6099	27.4667	223.602	215.996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top