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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001099 ID=TCONS_00001099|Name=TCONS_00001099|organism=Clytia hemisphaerica|type=transcript|length=2934bp GCGACTACGAACGAGTCTACTTTTCAGTGACTGATGTTGTGAAATCTAAA TTAGTGGAATAAAAAAGAGAGTCGGTGGTCAATTAATCTTTGATCTTtga caggaaaaagaagaacaCCCGACGTATCGTGAAGTTCCATTGATCAAGAA GAATTCCATCCAACTTGAAGACTGCTTAGAATTATTCTTACAACGAGAAA AACTAGGAGAACAAGACCCATGGTATTGTCCCGAATGTAAAGAACACAGA CAAGCATTCAAGAAATTCGACTTATGGTCTTTACCGAAGGTCTTAGTCAT CCATCTCAAACGGTTCTCCTACAATAAataTTGGAGAGATAAATTAGACG CATTAGTACATTTTCCTGTAAAGGGTCTAGAATTAACAAATTACGTCATC GATAAAAAACATCCTCGATCTGTTTACGACCTGCACGCTGTATCGaatCA TTACGGTGGCATGGGTGGTGGACATTATACGGCGTATGGAATAAATTGTT ACGACGGACAGTGGCATTACTTCGATGATAGTTCAGTATCCCTAGCTGAC GAGCATTCACCTGTTTCAAAGGCGgcatatttattattttacacACGTCG TGATGACCCTGACAGTGAGATGATGAACACAAGCGACCTCTTGACTGAAG ATAATACTTTCATGGACGACTAACGTATGGTGTGTTAAGTAGTTTTTATT GTCACTCGTTGACCGGTGGTTTAAACCaacaacttttaattttttgcatt aTATTCAAAGATTCTAGTTTTATACACAATGAGTTTTTTGATGTTACGTA TCATAGTCATTGCAAGGTTTAGTATCATAGTCATTGCAAGGTTTAGTATC AGAGCTGAGTTAATCTTAATCTtacatgaagaaaaaaaataactagCTTA TTGTTTGGGTTTACCAATAGTCGTGGTAGTATTTTCCGATGTTGAAAAAT TCGTACACGAAGTATACCTGTTGATTAGAATTCTGATTGATAAATAAACT ATTTTGAACCTGCTAATACTTCTCTTTGCATATCGTCTGTTCAACGAAAC GGCCGAATTATCATTTTTGtagttaaactttttgttattttttgatgTTA TACGGTTATACTAAATGTGACATGTTGCATGTTGTTAGCTCTTGAattat ccccatttgaaattagATAGCGGTAGCCTTCACCACTTTTTAGTCTCGAG TAGCTTTAAAACATCTCGTCTTCTAAACGAATTCTTTTCCAGAGGGTGGC TTTCGAACGGGTCGGATTGAGTTTAACGTTAAaacgttttatttttgttt cattttttcacgTTATGTCACTAGTAAAAACGCGTTGAATTACAAATTAG GTTTAAATCAATTTATACTGTCGTAATATAAAATCTGTAAAAGGTTCTTT CTTTAGTAAAGATACATTAGTATGTAACATAACAAATCGCCCTGTAATAT TCCTTTTTATATCCCAAAATATTGTCATGACATTGGTTCAAAGATGTTTT ACGACTGGACCTTGTTAATTTCGAACCGTATTTTACGGCTTCTACTAGAG TTCTACTTAAGTTGCTTACTGTGGTTAtcctttaaaaaatttctaatcGT CAAGTGCTGTACAATTGTATTAAAATGTGTGTCATTGTTATNAAAAATTG GCTTTGTTCGAAAGGAAAGAATGTCGACGAAGAAATACTTTCGTGGTTAt cctttaaaaaatttctaatcGCCAAGTGCTATACAATTGTATTAAAATGT GtgtcatttttataaaaaatttacaatagtTATCCCCTATACTAAATTCC AAATATTTCAGCTATTTATTTCCCtgtcaatcaaaagattttgtttgacg ATCCTTGTTCATTCAATATTTTGCCGAGCTCACTGGATCTTTCGGTGGCA GCATTCACAGCGTCGATGACAGCAGAGCGCATGCGCCCTTTCTCTAATGC ATGGATACCTCGAATGGTACTGCCACCTGCTGAACAAACATCATCTTTTA ACTTGCCTGGATGGTCTCCAGTCTCCTCAACCATACGGGCGGCACCGAGA ACGGATTTAGCCGCCATTTTCATTGCCTCTTCTCGCGTCATTCCTCCTAA AACAGCCGCGTCTGCGATGGCTTCGATGAAACAGTAGGCATAAGCGGGTC CGCCACCTGCAAACCCGGTCACCACATCCAATAAGTTCTCTTTCACTTCA GTGCAATAACCAACCGTGCTCATCAAGTCTTGTATCAGTTTTCGATCCGC TTCGCGACAGTGAGGACCAAGGGCGAAACTCGAAACGCCCTCACGAAATT GCGTGGGTGTGTTGGTCATCAGACGGGCTATTCGAGTCTTTGGTGGAAGC AAATATTGCATGTTACGGATCTTCATCCCTGAAATAGACAAAAGGAAATa gattttacacttttttactAGAACAGATTTTCATAATTCGGTTTGGTTAA GCTAAGGTTTGCAGCCTTAAATCTACAGAGTCTTGATAAAACTAGAATAT TTGTTTACCTGCAGCAAAAGATAGAAGTAGATGGTCTGGTGTGATGTGCG GTGAAATTTCTCTTAAAACTTTGGGAAGCACTTGAGGCTTTACGGAGAGC GCTACAAGTTTGTTTTCCTTCACTAATTTAACGTTGTCGGTGGTTGTTTT GCATCCGAGTTTCATGACGTGAGTATCCGAAGGTGCACTCGCCCATATTT GGTTGATTTGCAAAGCCCCAGCTGCAATGAATCCTTTAGTCAAAGTCTCA GCTAATGTTCCTGCTCCCAGAAAAGCCAATTGTGGTATTCGAAAAGTCCT ATACATGCTCCCCTCTTTGATGGTCAAAGTTTCAGAGGTTTTCTTCCAGA AAATTGAGAGacaaaatcataacaaactTTTACAgtatttatcttttttc cacGTGGGATTGGTTATGTTGTTAAGAGTGTCTT Run BLAST on NCBI transcript from alignment at sc0000007:159708..164646- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001099 ID=TCONS_00001099|Name=TCONS_00001099|organism=Clytia hemisphaerica|type=transcript|length=4939bp|location=Sequence derived from alignment at sc0000007:159708..164646- (Clytia hemisphaerica) GCGACTACGAACGAGTCTACTTTTCAGTGACTGATGTTGTGAAATCTAAA
TTAGTGGAATAAAAAAGAGAGTCGGTGGTCAATTAATCTTTGATCTTTGA
CAGGAAAAAGAAGAACACCCGACGTATCGTGAAGTTCCATTGATCAAGAA
GAATTCCATCCAACTTGAAGACTGCTTAGAATTATTCTTACAACGAGAAA
AACTAGGAGAACAAGACCCATGGTAAGACATCTCAATCTTTGGGATGAGC
TGGAGTTTTTACAAGATACTTCACTAATTGGTCATTTGAAGTGATAGAGA
TGACGCGTTCTCTAGAAAAAGTAACAAAATTGTTTTATTACTGGTTAACG
ACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCAGCTTGTCCCCAATC
TTTCTCATGTTTTTCAACAAATTATCAACAAGCACTCATCCCAATCAAAC
ATACGATAACCTATTTTTCTTCTTAGGTATTGTCCCGAATGTAAAGAACA
CAGACAAGCATTCAAGAAATTCGACTTATGGTCTTTACCGAAGGTCTTAG
TCATCCATCTCAAACGGTTCTCCTACAATAAGTGAGTTTCCCTTTCCTTT
CATTTTCTTCTGTTTCTAAAGAAGACGTGCTCAATGGTAATAATGGCTGA
TCAACAATACATTGACCCTTCTTCTTCTATTTCTTCATTTACGCCCCCCC
CCAGCGGTTTGCGTGAATGCGTAAATGGGCTTTTTTGGTTGCATAGATGC
GTGAAAATTGGGAAAAAAATGCGTCAATGCGTGAACTTTCTCTTTTTCCG
TTGATTATGTGATTATTTCCTGATTTTCAAATGTCTTCCCGAGTTTTCCC
GAAAATTTTTCGGCTTTTCTGAAAAATCGGGTTTGCGTGAAACTCGATAA
AAAGTTGCGTGTATGTGTGATTGCGTGAATTGAGGGTTCACTGGGGGGCG
GGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGCTTGATAAAATC
TTGCTTCCTTGCTTATTAGGGGGTTATCCAGGGCCAATTTTTTGTCATTT
GCACGTTCGACGCACAAGTATCTTAATTGTTCTTTATTTTTTAGATATTG
GAGAGATAAATTAGACGCATTAGTACATTTTCCTGTAAAGTAAGTCTGAA
AACTACTATTATCCTTATATTAGGGTCACAATATATTTGACTTGATTTAA
CATTGAAATTCAAACTTCTTACAATACGATCAAAATTCAGAATCAATTTT
TGTGGTTTTTTTAACTAAAAATTATCTTGTTTTAGGGGTCTAGAATTAAC
AAATTACGTCATCGATAAAAAACATCCTCGATCTGTTTACGACCTGCACG
CTGTATCGGTAAGTGTCACGTTTATAAAATGCATCTCACTTTCTTTGATC
GGTTGTTGCTGTCAAATAGTAACATTTTCATAAGATTCTCTCACTGTGGA
AATTCTAAAGGAGAAGGCATATTTAATAAAGGTTTTGTTTTTAAATAAGA
GTATGATACCGTTTGCTTAATCATCAATTTTAATGTACAAGCTTTTTCAC
ATTGAATTGACACGGATGTGGAGCAAGATTGTTCAGAAAGAGGAAAATAA
ATTTTTTGTTTATTCAGCACGAAATCGAACACAATTATAACAATAGAAGA
CACCGACCTGGCATAAAATGGTGTGTCTGATATGAAACGGGAACACTTGT
GTAAAACTAGAATCTTCAACCCCTCAGAAACCAGACAGCACAAAATGATT
TTTACGTATTAGCCGTATTGTATAAGGGTTGCGAAGCGATCCAGACTCCA
CCTCAATTCGTACGATTACATCCTTTCTAAAAAATATTTTTTTTTTTTGT
AGAATCATTACGGTGGCATGGGTGGTGGACATTGTAAGAATTATACTTAG
TTTTTGTCAGATTTTTTTGAGAAAAAAAATTTATGAGAATTGTTAAAAGG
ACCATTCTGCCTCGCAATGAATTAAAAAATATTAACTTGGCTTCAAAGCT
AGAATTTTTAGTTTTCACAACAGTGAACCTTTCTGTAACGAGAATAATGT
TTGCGTTTAGATACGGCGTATGGAATAAATTGTTACGACGGACAGTGGCA
TTACTTCGATGATAGTTCAGTATCCCTAGCTGACGAGCATTCACCTGTTG
TAAGTATTTTAATATGTTTTCTCACGAGGGAAACATTCCTCCAAATCAGC
TTTCACTTTGAGAAAGATATAACAGTTCGGTTTTTTTATAAATTACGTTA
CAAAAAAAACACTATCTCGTCTTGAGTCAATGCAACTGTGTATCACTTGT
GACCTATAATCATTCTTCAATGAAGGACATATTCGTTAATGAAAAGAGTA
TACCTCTACAAATTTGGAATATTGATCGTCAACTATTCACCTTTTTGCTC
GACGATACCATAACTTGTAAGTAAATCCATTGCATATTATCTTATGCTAT
GTTTTATTTTCCCTTTTCAGTCAAAGGCGGCATATTTATTATTTTACACA
CGTCGTGATGACCCTGACAGTGAGATGATGAACACAAGCGACCTCTTGAC
TGAAGATAATACTTTCATGGACGACTAACGTATGGTGTGTTAAGTAGTTT
TTATTGTCACTCGTTGACCGGTGGTTTAAACCAACAACTTTTAATTTTTT
GCATTATATTCAAAGATTCTAGTTTTATACACAATGAGTTTTTTGATGTT
ACGTATCATAGTCATTGCAAGGTTTAGTATCATAGTCATTGCAAGGTTTA
GTATCAGAGCTGAGTTAATCTTAATCTTACATGAAGAAAAAAAATAACTA
GCTTATTGTTTGGGTTTACCAATAGTCGTGGTAGTATTTTCCGATGTTGA
AAAATTCGTACACGAAGTATACCTGTTGATTAGAATTCTGATTGATAAAT
AAACTATTTTGAACCTGCTAATACTTCTCTTTGCATATCGTCTGTTCAAC
GAAACGGCCGAATTATCATTTTTGTAGTTAAACTTTTTGTTATTTTTTGA
TGTTATACGGTTATACTAAATGTGACATGTTGCATGTTGTTAGCTCTTGA
ATTATCCCCATTTGAAATTAGATAGCGGTAGCCTTCACCACTTTTTAGTC
TCGAGTAGCTTTAAAACATCTCGTCTTCTAAACGAATTCTTTTCCAGAGG
GTGGCTTTCGAACGGGTCGGATTGAGTTTAACGTTAAAACGTTTTATTTT
TGTTTCATTTTTTCACGTTATGTCACTAGTAAAAACGCGTTGAATTACAA
ATTAGGTTTAAATCAATTTATACTGTCGTAATATAAAATCTGTAAAAGGT
TCTTTCTTTAGTAAAGATACATTAGTATGTAACATAACAAATCGCCCTGT
AATATTCCTTTTTATATCCCAAAATATTGTCATGACATTGGTTCAAAGAT
GTTTTACGACTGGACCTTGTTAATTTCGAACCGTATTTTACGGCTTCTAC
TAGAGTTCTACTTAAGTTGCTTACTGTGGTTATCCTTTAAAAAATTTCTA
ATCGTCAAGTGCTGTACAATTGTATTAAAATGTGTGTCATTGTTATNAAA
AATTGGCTTTGTTCGAAAGGAAAGAATGTCGACGAAGAAATACTTTCGTG
GTTATCCTTTAAAAAATTTCTAATCGCCAAGTGCTATACAATTGTATTAA
AATGTGTGTCATTTTTATAAAAAATTTACAATAGTTATCCCCTATACTAA
ATTCCAAATATTTCAGCTATTTATTTCCCTGTCAATCAAAAGATTTTGTT
TGACGATCCTTGTTCATTCAATATTTTGCCGAGCTCACTGGATCTTTCGG
TGGCAGCATTCACAGCGTCGATGACAGCAGAGCGCATGCGCCCTTTCTCT
AATGCATGGATACCTCGAATGGTACTGCCACCTGCTGAACAAACATCATC
TTTTAACTTGCCTGGATGGTCTCCAGTCTCCTCAACCATACGGGCGGCAC
CGAGAACGGATTTAGCCGCCATTTTCATTGCCTCTTCTCGCGTCATTCCT
CCTAAAACAGCCGCGTCTGCGATGGCTTCGATGAAACAGTAGGCATAAGC
GGGTCCGCCACCTGCAAACCCGGTCACCACATCCAATAAGTTCTCTTTCA
CTTCAGTGCAATAACCAACCGTGCTCATCAAGTCTTGTATCAGTTTTCGA
TCCGCTTCGCGACAGTGAGGACCAAGGGCGAAACTCGAAACGCCCTCACG
AAATTGCGTGGGTGTGTTGGTCATCAGACGGGCTATTCGAGTCTTTGGTG
GAAGCAAATATTGCATGTTACGGATCTTCATCCCTGAAATAGACAAAAGG
AAATAGATTTTACACTTTTTTACTAGAACAGATTTTCATAATTCGGTTTG
GTTAAGCTAAGGTTTGCAGCCTTAAATCTACAGAGTCTTGATAAAACTAG
AATATTTGTTTACCTGCAGCAAAAGATAGAAGTAGATGGTCTGGTGTGAT
GTGCGGTGAAATTTCTCTTAAAACTTTGGGAAGCACTTGAGGCTTTACGG
AGAGCGCTACAAGTTTGTTTTCCTTCACTAATTTAACGTTGTCGGTGGTT
GTTTTGCATCCGAGTTTCATGACGTGAGTATCCGAAGGTGCACTCGCCCA
TATTTGGTTGATTTGCAAAGCCCCAGCTGCAATGAATCCTTTAGTCAAAG
TCTCAGCTAATGTTCCTGCTCCCAGAAAAGCCAATTGTGGTATTCGAAAA
GTCCTATACATGCTCCCCTCTTTGATGGTCAAAGTTTCAGAGGTTTTCTT
CCAGAAAATTGAGAGACAAAATCATAACAAACTTTTACAGTATTTATCTT
TTTTCCACGTGGGATTGGTTATGTTGTTAAGAGTGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001099-exon-sc0000007-1575043694:164425..164646 | TCONS_00001099-exon-sc0000007-1575043694:164425..164646 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1575043694:164066..164170 | TCONS_00001099-exon-sc0000007-1575043694:164066..164170 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1575043694:163408..163452 | TCONS_00001099-exon-sc0000007-1575043694:163408..163452 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1575043694:163189..163261 | TCONS_00001099-exon-sc0000007-1575043694:163189..163261 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1575043694:162664..162694 | TCONS_00001099-exon-sc0000007-1575043694:162664..162694 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1575043694:162398..162486 | TCONS_00001099-exon-sc0000007-1575043694:162398..162486 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1575043694:159708..162076 | TCONS_00001099-exon-sc0000007-1575043694:159708..162076 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1510915933:164425..164646 | TCONS_00001099-exon-sc0000007-1510915933:164425..164646 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1510915933:164066..164170 | TCONS_00001099-exon-sc0000007-1510915933:164066..164170 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1510915933:163408..163452 | TCONS_00001099-exon-sc0000007-1510915933:163408..163452 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1510915933:163189..163261 | TCONS_00001099-exon-sc0000007-1510915933:163189..163261 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1510915933:162664..162694 | TCONS_00001099-exon-sc0000007-1510915933:162664..162694 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1510915933:162398..162486 | TCONS_00001099-exon-sc0000007-1510915933:162398..162486 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1510915933:159708..162076 | TCONS_00001099-exon-sc0000007-1510915933:159708..162076 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1491911889:164425..164646 | TCONS_00001099-exon-sc0000007-1491911889:164425..164646 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1491911889:164066..164170 | TCONS_00001099-exon-sc0000007-1491911889:164066..164170 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1491911889:163408..163452 | TCONS_00001099-exon-sc0000007-1491911889:163408..163452 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1491911889:163189..163261 | TCONS_00001099-exon-sc0000007-1491911889:163189..163261 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1491911889:162664..162694 | TCONS_00001099-exon-sc0000007-1491911889:162664..162694 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1491911889:162398..162486 | TCONS_00001099-exon-sc0000007-1491911889:162398..162486 | Clytia hemisphaerica | exon |
TCONS_00001099-exon-sc0000007-1491911889:159708..162076 | TCONS_00001099-exon-sc0000007-1491911889:159708..162076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:159708..164646 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004735 | pyrroline-5-carboxylate reductase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006561 | proline biosynthetic process |
GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055114 |
oxidation-reduction process |
biological_process |
GO:0006561 |
proline biosynthetic process |
molecular_function |
GO:0004735 |
pyrroline-5-carboxylate reductase activity |
Blast
BLAST of TCONS_00001099 vs. Swiss-Prot (Human)
Match: P5CR3 (Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCR3 PE=1 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 2.282e-54 Identity = 74/178 (41.57%), Postives = 114/178 (64.04%), Query Frame = -1
Query: 1870 YFLLSIS-GMKIRNMQYLLPPKTRIARLMTNTPTQFREGVSSFALGPHCREADRKLIQDLMSTVGYCTEVKENLLDVVTGFAGGGPAYAYCFIEAIADAAVLGGMTREEAMKMAAKSVLGAARMVEETGDHPGKLKDDVCSAGGSTIRGIHALEKGRMRSAVIDAVNAATERSSELGK 2400
+ L+S++ G+ + ++ LLPP TR+ R++ N P +EG A G H ++ KL+Q L+ G C EV E +D+ TG +G G A+ F EA+A+ AV GM A ++AA+++LG A+M+ G HP +L+ DVC+ GG+TI G+HALE+G +R+A + AV AAT R+ EL +
Sbjct: 96 HILVSVAAGVSLSTLEELLPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETKLLQHLLEACGRCEEVPEAYVDIHTGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRAKELSR 273 HSP 2 Score: 82.4185 bits (202), Expect = 2.282e-54 Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = -3
Query: 2507 QLAFLGAGTLAETLTKGFIAAGALQINQIWASAPSD---THVMKLGCKTTTDNVKLVKENKLVALSVKPQVLPKVLREISPHITPDHLLLSFAAG 2782
++ F+GAG +A + +G I AG ++ I ASAP+D H LGC+TT N ++++ LV + KP VLP VL E++P +T +H+L+S AAG
Sbjct: 10 RVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCHFQALGCRTTHSNQEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAG 104
The following BLAST results are available for this feature:
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