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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001169 ID=TCONS_00001169|Name=TCONS_00001169|organism=Clytia hemisphaerica|type=transcript|length=2482bp
TAATTATTTACTCATATTTTTGTgtaaaaacagcaatttttggCTTTCTA
CTTAGTTGATTCTTGCTTACTCAAACACTTCTTACTAACATCCTGAAAGT
TCGGATATATTAGCGATGCCCATTAAGAAAAATAATCGATTACTCAATGT
TATAACTTGCTCGAACTTACATTCTCAGCTTTCCGgttatttcaaaatat
cttctCCCATGATCACGTTAAGCAAGTTCAATATCTAATTAATTTGCAAA
TTAATGACACAAGGTTAATATAAATACTGCAACACTAACTTCTCTCGACA
TTATTCGATCAACTCATATTTATCATATGGTCGTGCTGAACTGGTTTTAC
AAACAAGCAAGAAATCAAGATGGTAGCTGCAGGCGCAATCAATGTGTCTT
TCGAGCCTGAAGAAGAACACCATCACACACGGGAGTTATCAAAGGATGGC
GACCTCAAACACCTTCAAGAACATTACGATGAAATTACAGACACAAAACT
CCCTGAAAATCTACACCGTGGTGACATCACAACTGTCAACCGTTTCCTTG
GTTACCATGATGCCATGATGGCTACCTGTGGGACCTTTCTCGTCTTACCA
TTACGTAACCTTAATAATTTTGTGAAAACCGAGATTTATGACGAGTTGGA
GAAGAACCATGAATTGCCACATGACCCCGTTGTCGTCGACGATTTGGCTG
AATATATAGATGCTACAAAAACTAAACTAATAATGTTCTTCCTTGGTTTT
CTCATTATTTGCACGATTTGGGAGACCAACATCATTCGAACAAACGTCAT
CAAAAGATACGATGATTTTATGGTCATGCTTGGACTCTTCCAGATGGCAG
CCATTGTGGTTCTCCCATTCTCCATCGCTTTGAATGGTGCATACCCAAGA
GAGGATGTGACTGTGCTCCTCACCATAACCATTTTGATcattatcaacat
tttcgaacTGATCATGATTTTGTACGGATTCTACTGTCCAAGGTTGCTCA
ATATGGCCATGAAAGACTGGAGCAATAAGGAGGTCCGACGGTTCATGCTG
AGAATGTGCATTAAGCCAATCGTTGAAATAGTTTTAGTGGGCGTTGCTGG
CGCATTTAGCTTGTTGAGGTATGAAATCTCATGGGTTTTACTGGCTCTTT
TGATCGCCGTGCCCTTGTTTCGAAGATTGGCTTTCTACTACGAGCGACAT
CACCACTCAAATGCCAAAGTTGAGAAATGCAGATTCTACTATTTCTTCAC
GAAAGGACAGATCAGTAAAGAAAGAGTAGAAGCATTTTCGGACGCAGCGA
TCGCAATCATTGCATGTGTATTGATTTTGGACATCACAGTTGAAGAGTTC
CCAACAGCTCACGACGTGAAAGAAAAAGGCTTGATTTCCGTACTCTCTCA
CTTAAGAATTGAAATAGGCGCCTTCTTCGGCACTTATTTGGCAGTTTCTT
TGCTGTGGTACGTCAACCATACTGTATTACATCTTTTCCATACCATCGAC
ATTGGCGCATTGTATTTGCAGAAAATCTTTCTTGCATTCCTCTGCCTTGC
TCCCATTCAAAACAACATGATGGTAAAGACAGCCAACAAGGGATCCGATG
CTGAAAAACAATTAGCCTTGCAATGGAGCAGTGGAACTGTTTTCGCTGCA
AGCTTCTCACAAGTTCTTATGGTGGCCTGGGGATTCTACCGCAAAGGGAA
ACTCTTCCATCGCTGGGCTACTTGTGAGAGTACATTCGACACTTTGATGA
ATCGTAAACAATCCATGTATATTCGTTTCAAAGTCGCAGCCATTCCCTTT
TGGTCATTTATCGgtattttttcatcatttgcATCCGGCGACATAGGATT
TATAATCACAATTGTATGCATCATCTCCACTATCCTCTCATTAATCCTGC
TCAAATTTATCTTCATGAATCACGTGAGTAAAAAGGACAAATTCCTTACC
AACGGTAAAACAATATCAAGAGATCAGTCGATCGAATCACTCGGTGACAT
TGAACTACGGAACAGTATGGCGGAGGAGATAGCGGATGGGAAAATGTACG
AGGATGAAAATGAGATGGAAAGAGAAGTGATGGAAGacacagaaaagaaa
aattgaagaaacaaaaaaatgaggAACGATAGGAAAAAGACATGGCTCAA
AACCATTCAGAAAATGGTAGATTACGTCATCACCGATAGAGACAATCATT
CTAAAATGAACGGTATTAAGTTTAAGGTGCAGGGATTTTAAACAGATAGT
TTGATATAAttatattatcaaaaaaattcgGAAAATGTAATAAAGTTTAG
AGTGATGACACATATCATTGataaaatctttgtttggttgGAAAACTatg
aacacccctgtctcaattacCCGGAGAATACCTAAACCAGTAGGGATGAC
ATTAAGATGCTGAATGCCGATAAGGGGGATTcttgttttgaatttcaatt
gttATTGAGGAAGACCTAAAACATATTCTGAT Run BLAST on NCBI transcript from alignment at sc0000007:654460..656941- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001169 ID=TCONS_00001169|Name=TCONS_00001169|organism=Clytia hemisphaerica|type=transcript|length=2482bp|location=Sequence derived from alignment at sc0000007:654460..656941- (Clytia hemisphaerica)
TAATTATTTACTCATATTTTTGTGTAAAAACAGCAATTTTTGGCTTTCTA
CTTAGTTGATTCTTGCTTACTCAAACACTTCTTACTAACATCCTGAAAGT
TCGGATATATTAGCGATGCCCATTAAGAAAAATAATCGATTACTCAATGT
TATAACTTGCTCGAACTTACATTCTCAGCTTTCCGGTTATTTCAAAATAT
CTTCTCCCATGATCACGTTAAGCAAGTTCAATATCTAATTAATTTGCAAA
TTAATGACACAAGGTTAATATAAATACTGCAACACTAACTTCTCTCGACA
TTATTCGATCAACTCATATTTATCATATGGTCGTGCTGAACTGGTTTTAC
AAACAAGCAAGAAATCAAGATGGTAGCTGCAGGCGCAATCAATGTGTCTT
TCGAGCCTGAAGAAGAACACCATCACACACGGGAGTTATCAAAGGATGGC
GACCTCAAACACCTTCAAGAACATTACGATGAAATTACAGACACAAAACT
CCCTGAAAATCTACACCGTGGTGACATCACAACTGTCAACCGTTTCCTTG
GTTACCATGATGCCATGATGGCTACCTGTGGGACCTTTCTCGTCTTACCA
TTACGTAACCTTAATAATTTTGTGAAAACCGAGATTTATGACGAGTTGGA
GAAGAACCATGAATTGCCACATGACCCCGTTGTCGTCGACGATTTGGCTG
AATATATAGATGCTACAAAAACTAAACTAATAATGTTCTTCCTTGGTTTT
CTCATTATTTGCACGATTTGGGAGACCAACATCATTCGAACAAACGTCAT
CAAAAGATACGATGATTTTATGGTCATGCTTGGACTCTTCCAGATGGCAG
CCATTGTGGTTCTCCCATTCTCCATCGCTTTGAATGGTGCATACCCAAGA
GAGGATGTGACTGTGCTCCTCACCATAACCATTTTGATCATTATCAACAT
TTTCGAACTGATCATGATTTTGTACGGATTCTACTGTCCAAGGTTGCTCA
ATATGGCCATGAAAGACTGGAGCAATAAGGAGGTCCGACGGTTCATGCTG
AGAATGTGCATTAAGCCAATCGTTGAAATAGTTTTAGTGGGCGTTGCTGG
CGCATTTAGCTTGTTGAGGTATGAAATCTCATGGGTTTTACTGGCTCTTT
TGATCGCCGTGCCCTTGTTTCGAAGATTGGCTTTCTACTACGAGCGACAT
CACCACTCAAATGCCAAAGTTGAGAAATGCAGATTCTACTATTTCTTCAC
GAAAGGACAGATCAGTAAAGAAAGAGTAGAAGCATTTTCGGACGCAGCGA
TCGCAATCATTGCATGTGTATTGATTTTGGACATCACAGTTGAAGAGTTC
CCAACAGCTCACGACGTGAAAGAAAAAGGCTTGATTTCCGTACTCTCTCA
CTTAAGAATTGAAATAGGCGCCTTCTTCGGCACTTATTTGGCAGTTTCTT
TGCTGTGGTACGTCAACCATACTGTATTACATCTTTTCCATACCATCGAC
ATTGGCGCATTGTATTTGCAGAAAATCTTTCTTGCATTCCTCTGCCTTGC
TCCCATTCAAAACAACATGATGGTAAAGACAGCCAACAAGGGATCCGATG
CTGAAAAACAATTAGCCTTGCAATGGAGCAGTGGAACTGTTTTCGCTGCA
AGCTTCTCACAAGTTCTTATGGTGGCCTGGGGATTCTACCGCAAAGGGAA
ACTCTTCCATCGCTGGGCTACTTGTGAGAGTACATTCGACACTTTGATGA
ATCGTAAACAATCCATGTATATTCGTTTCAAAGTCGCAGCCATTCCCTTT
TGGTCATTTATCGGTATTTTTTCATCATTTGCATCCGGCGACATAGGATT
TATAATCACAATTGTATGCATCATCTCCACTATCCTCTCATTAATCCTGC
TCAAATTTATCTTCATGAATCACGTGAGTAAAAAGGACAAATTCCTTACC
AACGGTAAAACAATATCAAGAGATCAGTCGATCGAATCACTCGGTGACAT
TGAACTACGGAACAGTATGGCGGAGGAGATAGCGGATGGGAAAATGTACG
AGGATGAAAATGAGATGGAAAGAGAAGTGATGGAAGACACAGAAAAGAAA
AATTGAAGAAACAAAAAAATGAGGAACGATAGGAAAAAGACATGGCTCAA
AACCATTCAGAAAATGGTAGATTACGTCATCACCGATAGAGACAATCATT
CTAAAATGAACGGTATTAAGTTTAAGGTGCAGGGATTTTAAACAGATAGT
TTGATATAATTATATTATCAAAAAAATTCGGAAAATGTAATAAAGTTTAG
AGTGATGACACATATCATTGATAAAATCTTTGTTTGGTTGGAAAACTATG
AACACCCCTGTCTCAATTACCCGGAGAATACCTAAACCAGTAGGGATGAC
ATTAAGATGCTGAATGCCGATAAGGGGGATTCTTGTTTTGAATTTCAATT
GTTATTGAGGAAGACCTAAAACATATTCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001169-exon-sc0000007-1575043694:654460..656941 | TCONS_00001169-exon-sc0000007-1575043694:654460..656941 | Clytia hemisphaerica | exon |
| TCONS_00001169-exon-sc0000007-1510915933:654460..656941 | TCONS_00001169-exon-sc0000007-1510915933:654460..656941 | Clytia hemisphaerica | exon |
| TCONS_00001169-exon-sc0000007-1491911889:654460..656941 | TCONS_00001169-exon-sc0000007-1491911889:654460..656941 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:654460..656941 - |
Blast
BLAST of TCONS_00001169 vs. Swiss-Prot (Human)
Match: TM175 (Endosomal/lysomomal potassium channel TMEM175 OS=Homo sapiens GN=TMEM175 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 8.296e-23 Identity = 103/393 (26.21%), Postives = 182/393 (46.31%), Query Frame = 1
Query: 526 ITTVNRFLGYHDAMMATCGTFLVLPLRNLNNFVKTEIYDELEKNHELPHDPVVVDDLAEYIDATKTKLIMFFLGFLIICTIWETNIIRTNVIKRYDDFMVMLGLFQMAAIVVLPFSIALNGAYPREDVXXXXXXXXXXXXXXXXXXXXXYGFYCPRLLNMAMKDWSNKEVRRFMLRMCIKPIVEIVLVG-----VAGAFSLLRYEISWVLLALLIAVPLFRRLAFYYERH--HHSNAKVEKCRFYYFFTKGQISKERVEAFSDXXXXXXXCVLILDITVEEFPTAHDVKEK---GLISVLSHLRIEIGAFFGTYLAVSLLWYVNHTV-LHLFHTIDIGALYLQKIFLAFLCLAPIQNNMMVKTANKGSDAEKQLALQWSSGTVFAASFSQVLM 1671
I R L + DA+++ T ++LP+ + TEI E + + V L T++ ++ + FLI+ W + V+ + DD + +L L M I LP++ +L +P + + L +I I + + +++ Y F+ P LL+ ++ +++ + R + ++ IVL G A FSL +S++L+ +I +P ++ + H + F +SKERVEAFSD AI+A +LILDI + P DVKE+ L++ LS A+FG++ V LLW+ +H++ LH+ L L + LAF+ P+ A + D ++ ++ S +F AS Q+ M
Sbjct: 30 IQCSQRMLSFSDALLSIIATVMILPVTH------TEISPEQQFDRS-------VQRL------LATRIAVYLMTFLIVTVAWAAHTRLFQVVGKTDDTLALLNLACMMTITFLPYTFSLMVTFPDVPLGIFLFCVCVIAIGVVQALIVGYAFHFPHLLSPQIQRSAHRALYR-------RHVLGIVLQGPALCFAAAIFSLFFVPLSYLLMVTVILLPYVSKVTGWCRDRLLGHREPSAHPVEVFSFDLHEPLSKERVEAFSDGVYAIVATLLILDICEDNVPDPKDVKERFSGSLVAALSATGPRFLAYFGSFATVGLLWFAHHSLFLHVRKATRAMGL-LNTLSLAFVGGLPLAYQQTSAFARQPRDELER--VRVSCTIIFLASIFQLAM 393
The following BLAST results are available for this feature:
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