TCONS_00001227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001227
Unique NameTCONS_00001227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001227 ID=TCONS_00001227|Name=TCONS_00001227|organism=Clytia hemisphaerica|type=transcript|length=2370bp
CACGCTGTCCAAGCAGCTGATTCTTTTAtcatttgtatttattttattta
gacataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACAC
TGGCTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCT
AACAATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttt
tgatgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATG
CTAAAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCT
GATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATA
CAAGATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTC
TCCAACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATAT
ATTATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaac
caacaaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGT
GTGTCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCC
ATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCA
AGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAA
TCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGG
CGGGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTT
CACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTT
ATGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAA
GAATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTC
TTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAG
TTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTT
GAAATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATC
AGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAG
TGAAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACA
TTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCA
TAATTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTA
TGGTATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAA
GTGTTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGT
ACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGG
GTTATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGG
ATGGTTGTAGCCAATATTTCACATGATgtcaaaattgactggttagaGAT
GAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTAT
TATTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGC
TCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAG
AAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTA
TCGTTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAA
ACAAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGA
CGAAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTA
GGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCT
ATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCAT
CGCCGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATT
TACGTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGAT
CCTATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACA
ATTCAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAG
CGATGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATC
GCCGAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTT
GCAATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAA
CCTTGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147661-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001227 ID=TCONS_00001227|Name=TCONS_00001227|organism=Clytia hemisphaerica|type=transcript|length=10813bp|location=Sequence derived from alignment at sc0000007:1136849..1147661- (Clytia hemisphaerica)
CACGCTGTCCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTA
GACATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACAC
TGGCTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCT
CTTCATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATAT
AACCATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTT
TAATCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTA
TGAAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAAT
ACCAAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGA
ACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAG
TAAGCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGT
TATCACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACT
TTTTCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTG
AACAAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTT
AGCATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCT
TTTTCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTG
ATGAAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATG
TTAAAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAG
CCAATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTT
TAGTAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCAT
TTATTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAA
ATGATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAG
CATTTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATT
GTTTTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATC
TTTCTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGA
AGATCGAACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTG
ATTTTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAAC
AGGTAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTT
TTTTAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATG
AATGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATC
AATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAAT
CAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACA
TTTTGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAA
ATTGATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATA
GGGCTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATG
TCACCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTG
AAAACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGG
TGATCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTA
TTGGTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGA
TATAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGA
GTTTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCC
ATTTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAAC
TGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCAT
TCTGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATAT
TACTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTA
CAGCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAAC
AGATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACAT
TTTCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGC
CATCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATG
CAGATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTG
ACCCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACT
AAACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAA
GAGTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAA
TTTCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATA
TGCTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGG
GCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTAC
AAGAGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATAC
TGTGTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATT
TAATGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGC
CCCCAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGT
GACTTATGACATTTTGACTTTTATTATATCATGATATAATGATGGATGAT
ATCTCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTC
TGTTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAA
AAAAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCT
TAGCTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTA
TACTCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTC
AAGATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTT
TTTAACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAA
TTTTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCA
TCTTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCA
AGTCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTG
TATATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATT
TTCAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAG
CTTGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAAC
AATTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTT
GAAAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATA
ACTGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGA
TGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATA
TGTTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAAT
GTTAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTT
TTTGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAAC
AATCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTA
CACAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCA
AGATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCC
ACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATA
AAAGAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTT
TCACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCAT
TTCCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAA
AGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTC
AGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGT
CCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTT
ATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTG
CTGTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGT
TTTAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATT
AGTATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAAT
ATATCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTT
CAGGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAG
ATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGG
TAAAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACC
CTTTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTG
ACCACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAA
AAATATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAA
CCTTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGG
TTAAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAA
ATTGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACA
TATAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCC
AACTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGC
TGTGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCT
CTAAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCG
ACTGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCT
GGTTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAA
GCGCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAAT
TATAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAAC
TTTGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATT
TGGCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTT
TGTATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGC
CTAATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATAT
TTCTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGA
AAATAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCAT
CAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAA
GGTTTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAAC
AAATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGT
ATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAG
TTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGAT
AGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATC
TAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGA
AAAGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTAT
TTTTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTT
ACATATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAA
TTTTTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTT
ACTGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGA
ACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAA
TGACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACT
TTTGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTA
AATCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACAC
CGGATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAAC
CATTGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGG
AAAAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTG
TATTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCT
CTGTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATC
ATCTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATG
AATTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGC
AAAGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGG
TTCTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGT
TTTTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAA
ATGTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGG
CCTTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCA
CTAACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTG
ATTTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTA
AAATCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAG
AAAATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTG
TAATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCT
GATGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTT
GTTGGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAA
GCTTAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATC
ATAAGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGA
TTTTGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAA
TTCAGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGT
TTAAAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAG
ATTACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACT
GCTAAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTT
ACTTTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGA
GAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAG
AACAGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCA
GATATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTT
GATTTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGA
ATAATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAA
GAATTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGA
CTGGACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACT
TTTTCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAAT
AAAAAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTA
AACGTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCA
TTTCTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGC
TCAGTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTC
TTTAATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCA
CATGATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATT
GTCTCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAA
TCTCAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGA
TGAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTA
AGTAATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTT
TAAAGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTAC
CTCTCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACC
ACTATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGT
TGTGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAAT
CACCTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTT
CATTTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAAC
TATTTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGT
AATTTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGG
CCTAAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAA
ATGAGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTA
TCAATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCC
AAGAAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGC
CTGAGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAA
ATCTGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAA
GCTTCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTC
ATGATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTT
TAGCCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAA
ATCAAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTG
CATGTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAA
CGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAG
GGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTT
GTCTTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCT
GCAGCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTT
TATTGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCG
TCTTTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAAT
TGTATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACC
TGAAACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATA
AAGAGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCA
TGATTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGA
GGATTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGT
AGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGG
AATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGT
ATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAA
CTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGA
GATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAG
CCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATAT
TTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAA
TTTAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001227-exon-sc0000007-1575043694:1147551..1147661TCONS_00001227-exon-sc0000007-1575043694:1147551..1147661Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1147213..1147356TCONS_00001227-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1146533..1146645TCONS_00001227-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1146360..1146399TCONS_00001227-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1146129..1146197TCONS_00001227-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1145570..1145649TCONS_00001227-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1143780..1143867TCONS_00001227-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1143435..1143537TCONS_00001227-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1143110..1143342TCONS_00001227-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1142813..1142908TCONS_00001227-exon-sc0000007-1575043694:1142813..1142908Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1141965..1142027TCONS_00001227-exon-sc0000007-1575043694:1141965..1142027Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1140002..1140100TCONS_00001227-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1139822..1139875TCONS_00001227-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1139532..1139635TCONS_00001227-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1139169..1139254TCONS_00001227-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1138935..1138999TCONS_00001227-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1138765..1138812TCONS_00001227-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1138480..1138647TCONS_00001227-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1137666..1137802TCONS_00001227-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1137340..1137447TCONS_00001227-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1136849..1137209TCONS_00001227-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1147551..1147661TCONS_00001227-exon-sc0000007-1510915933:1147551..1147661Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1147213..1147356TCONS_00001227-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1146533..1146645TCONS_00001227-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1146360..1146399TCONS_00001227-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1146129..1146197TCONS_00001227-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1145570..1145649TCONS_00001227-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1143780..1143867TCONS_00001227-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1143435..1143537TCONS_00001227-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1143110..1143342TCONS_00001227-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1142813..1142908TCONS_00001227-exon-sc0000007-1510915933:1142813..1142908Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1141965..1142027TCONS_00001227-exon-sc0000007-1510915933:1141965..1142027Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1140002..1140100TCONS_00001227-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1139822..1139875TCONS_00001227-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1139532..1139635TCONS_00001227-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1139169..1139254TCONS_00001227-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1138935..1138999TCONS_00001227-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1138765..1138812TCONS_00001227-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1138480..1138647TCONS_00001227-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1137666..1137802TCONS_00001227-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1137340..1137447TCONS_00001227-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1136849..1137209TCONS_00001227-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1147551..1147661TCONS_00001227-exon-sc0000007-1491911889:1147551..1147661Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1147213..1147356TCONS_00001227-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1146533..1146645TCONS_00001227-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1146360..1146399TCONS_00001227-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1146129..1146197TCONS_00001227-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1145570..1145649TCONS_00001227-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1143780..1143867TCONS_00001227-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1143435..1143537TCONS_00001227-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1143110..1143342TCONS_00001227-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1142813..1142908TCONS_00001227-exon-sc0000007-1491911889:1142813..1142908Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1141965..1142027TCONS_00001227-exon-sc0000007-1491911889:1141965..1142027Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1140002..1140100TCONS_00001227-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1139822..1139875TCONS_00001227-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1139532..1139635TCONS_00001227-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1139169..1139254TCONS_00001227-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1138935..1138999TCONS_00001227-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1138765..1138812TCONS_00001227-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1138480..1138647TCONS_00001227-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1137666..1137802TCONS_00001227-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1137340..1137447TCONS_00001227-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1136849..1137209TCONS_00001227-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147661 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.88364	0.000536587	2.3971	2.03944	0.767807	0.766905	1.07515	0.397021	2.55427	1.50813	0.0704841	0.447511	4.98521	2.62332	1.61229	3.47578	0.0273626	0.465404	5.09568	0.038086	0.457238	5.12601	0.158663	2.21408	9.06469	3.41732	1.12526	5.16637	0.0219367	1.83874
Blast
[Close]
BLAST of TCONS_00001227 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.87 bits (2820), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 1 
Query:   73 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2349
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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