TCONS_00001236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001236
Unique NameTCONS_00001236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001236 ID=TCONS_00001236|Name=TCONS_00001236|organism=Clytia hemisphaerica|type=transcript|length=2502bp
gcaaaaaaagtttttgcagCCGACCGggtgtttatttttttcgtccagaa
acaaaaatattttaagggtCAGCCTAAAAGAGAGAAGTGATGTTCCCATA
CATTCTGATTATACTAAATTTACTAATTGTATCACGCTGTCCAAGCAGCT
GATTCTTTTAtcatttgtatttattttatttagacataaaaaataaaaaa
caatatgCAGCTTAAACACTTAAAAACTACACTGGCTCCCCAGGATGGAG
CTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACCAAAATGGCA
ATAGTATCAACTGATCGtgtagttgttctttttgatgAACATGGAGAAAA
AAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAACTGGGAAGAAAG
GTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATTCCACCAAGATAGCT
GTTGGACAAACAGATAACATTGTTTTTGTATACAAGATTGGTGACGAATG
gGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGAGTGCTGTTA
CATGTTTGGTTTGGCCCCCAGAAAATCAATATATTATTTTTGGTCTTGCT
GATGGAAAGgTCAGGATGGCAAGTctaaaaaccaacaaatcacaAACTGT
CTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGTCCTGATGGGA
AAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGTTT
GAAGATACTGGGACAGGTTTGACCCAGGGGCAAGTTGTGAAACATGGCTG
TCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTG
ATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGGGTATTACAAAACTTC
GACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAG
TCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTT
TCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAG
ATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTC
AAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCT
GTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGG
TTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTT
AAAATCACATTATGGATACGAGATTGATGAAGTGAAAATAATGGGGAAGG
ACAGATTTCTTGTTGGACACACTTCAGAAACATTGCTTGTGGGAGATCTA
AACGAAAACAAGCTTAGTGAGCTTCCATGGCATAATTCAGGTGGAAATGA
GAAGttcttctttgaaaatgaaacaGTTTGTATGGTATTCAATGCAGGAG
AATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGA
ACAGAATTCATGAACCCTCATCTTATAAGCGTACGTTTGAATGAAAGAAA
GCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTATTTGATTGACCTGA
AAACTATATGTGTCAtgGACTTGATGTCAGGGATGGTTGTAGCCAATATT
TCACATGATgtcaaaattgactggttagaGATGAATGAGACTGGAAAGAA
GCTCTTATTCCGAGACAAAAAACTGAGGTTATTATTGGCAGATATTCAAA
GTGAAACAAAAACCACTATTTCTACATATTGCTCTTATGTGCAATGGGTG
CCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTG
GTACAATATTGAATCACCTGAACGAGTGACTATCGTTCCCATCAAAGGTG
ACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTGATCGTACAA
GAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGCTAATCGAGTT
TGGAACTGCTATGGAAGATGGTGATTATGCTAGGGCTGTTTCGTTTCTGG
AAGGATTGGAGATGTCACCTGAAACAGAAGCTATGTGGAAGACTCTCAGC
AAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCCGAAAGGTGTTTTGC
TGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATCAACGACT
TGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATCATCCGACT
ATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTTGCAGAAAG
TATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGATGTACCAAG
AAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAAAAGACAT
CCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTGATGAAGTC
AGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTAGTTAACA
GA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147793-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001236 ID=TCONS_00001236|Name=TCONS_00001236|organism=Clytia hemisphaerica|type=transcript|length=10945bp|location=Sequence derived from alignment at sc0000007:1136849..1147793- (Clytia hemisphaerica)
GCAAAAAAAGTTTTTGCAGCCGACCGGGTGTTTATTTTTTTCGTCCAGAA
ACAAAAATATTTTAAGGGTCAGCCTAAAAGAGAGAAGTGATGTTCCCATA
CATTCTGATTATACTAAATTTACTAATTGTATCACGCTGTCCAAGCAGCT
GATTCTTTTATCATTTGTATTTATTTTATTTAGACATAAAAAATAAAAAA
CAATATGCAGCTTAAACACTTAAAAACTACACTGGCTCCCCAGGTATGAA
AACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTTCATATAAAAAACTAT
TTAGGAATGAAATATTAAAGAACTCAAAATATAACCATTGCTGAACTTTA
TCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAATCCTTTCTAGTATGA
TTTATTGTTATACCTTTAAATTGTAATTTTTATGAAGGATGGAGCTGCTA
AGATCACAGCAATGGCATGGGCTCCTAACAATACCAAAATGGCAATAGTA
TCAACTGATCGTGTAGTTGTTCTTTTTGATGAACATGGAGAAAAAAGGGA
CAAATTTGGAACAAAACCTGGTGATGCTAAAGTAAGCTCTATCTAAGTCA
AAAAATCCCTTTGTGATAGAACAAATAAAAGTTATCACATGATATCGATT
ACAATATGGGATGTATTATATTAAGTTAAACTTTTTCCTCATATTTTTGA
GCCCGTATGCCAGGAAACTATCAAAAACTTTGAACAAGAAAAATATATCC
AATATTGTGCGAGTAAGTTTGATAATTGGTTTAGCATTAACTTGAAAAAT
ACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTTTCTATGTTTTTTTTT
CTCTTCATGCATTTTGTTCTTCCTCTATTTTGATGAAATTAACACCAAAA
CATTTATAAAAAATCCAAAGGTCATTAAAATGTTAAAAACATTCTTTTGT
ATAACTCTTCGGATGATTTGCTGCTCTATCAGCCAATCAGATTGCTCATA
TTTTTCATGTTGATGAAAAGATTAAATTATTTTAGTAGTCACATAAGCAT
AAGCCTTGGATGAAATAATGAATCTTCTTCATTTATTGATTTCAAATCTT
TCTTACTATCCACACCAAAGTTACCTTTCTAAATGATTGTTCTTTTAGAC
TGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATTCCA
CCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAAGATT
GGTGACGAATGGTAAGACTAAGAACATTGATCTTTCTAAAAACTGAAACA
TCTACAGTCAGATATTATTTACTTATATTTGAAGATCGAACATAATATGA
AAATGTTATTTATATATATTAATTAATTTTTGATTTTATTTTAGGGGCGA
AAGAAAAGTTATATGCAACAAGTTTCTCCAACAGGTAAAGTATCTTTTTA
AATTGATTATTATTTCATCACAAGAGAAATTTTTTTAACATTTGATACCA
TAGTATTGTATTATCCTATACTGTGTTAAATGAATGATTTTACTTTACAC
ATCTGCTATAATAATATAATTTAATGAGGATCAATTTTTACATTAGAGTG
CTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATTATTTTTGGT
CTTGCTGATGGAAAGGTTTGTGACTTTTGACATTTTGACTTTTATGATGG
ATGATATCTCTTTTGGGATTCAAATTTTATAAATTGATAAAGTAAAATAG
TTGTCTGTTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATG
GCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGACCA
TTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAAACAAATAATTAATTT
TACTATACTCATGAATTTTAAAAATCAAAAGGTGATCCTAAAAGTCTCAG
CTTTCAAAGATGGTTACATTTAAGAGATGGTATTGGTAGGAAAGGGAGAT
CTACTTTTTAACCTGGAAATATATATTGACGATATAAAGCATACAAACAC
CTAAAATTTTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTT
TCTTCATCTTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGG
ATGGCAAGTCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTAT
CCATTGTATATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAA
ATGATTTTCAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCT
TTGAAGCTTGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTAC
TTTAACAATTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAAT
TTTTTTGAAAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAAT
CCAATAACTGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAG
TCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCA
GATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATA
TTAAATGTTAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATA
TTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAG
ACAAACAATCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGT
GCATTACACAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAA
ATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGG
CTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAGAGAAAATTTTTTAAC
ATTTGATACCACAGTATTGTATTATCCTATACTGTGTTAAATGAATGATT
TTACTTTACACATCTGCTATAATAATATAATTTAATGAGAATCAATTTTT
ACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATA
TTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTATGACATTTTGAC
TTTTATTATATCATGATATAATGATGGATGATATCTCTTTTAGGATTCAA
ATTTTATAAATTGATGAAGTAAAATAGTTGTCTGTTTGACCATACCTCCT
AAATCTATAGGGCTGACAAAATGAATTGCAAAAAAAGTGTTTTTAAAACC
AGCCTAATGTCACCCCATAAGTGGCCATTTCTTAGCTGAACAGTTAATTT
ATTTTTTTGAAAACATATAATTAATTTTACTATACTCGTGAATTTTAAAT
ATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAGATGGTTACATTTAAG
AGATGGTATTGTTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATAT
ATTGACGATATAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAA
ATGATTGAGTTTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTA
AAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAA
TCACAAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAG
GTTGGCATTCTGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAA
AGCAATATTACTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATA
ATTGAGTACAGCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATT
TTCACAACAGATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAAT
ATAAACATTTTCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATT
ATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTC
AGGGCATGCAGATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGA
CAGGTTTGACCCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTA
GACAAACTAAACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGT
TACTAGAAGAGTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAA
TTTGCAAATTTCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAA
GAATTATATGCTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTT
CCATAGGGGCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTG
GGGCTCATCAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATG
GAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTT
TATTTAACAAATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTA
GGGCGGGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGA
GTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAA
GTTATGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGG
GAAGAATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACT
TTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTC
CCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAG
TTTGACTTACATATGGATGAAAAGTTTCAATTAGTATTCTACATGCAAAT
ATAAAGAATTTTTTTAAATGGTATTTACAAATATATCATAATACAGTAGC
TAAATCTTACTGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGT
GGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAA
ATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTT
GTTATACTTTTGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACAC
ACGATTTAAATCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGG
GCATACACCGGATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGT
ACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCTTTTATGCCAATTTGA
AAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATA
AGAATCTGTATTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACC
AATTTTCTCTGTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAAT
AACACATCATCTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACA
TAAAAATGAATTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTA
ATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCT
CGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACT
ATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAA
AAAAAGAAATGTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATA
AGGAATGGCCTTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGT
TATTTTCACTAACATTACAAATACAAAGAAACTTTGTTATTATTAATGCT
AACTGTTGATTTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAG
TTGTTTTAAAATCACATTATGGATACGAGGTTTGTATATAAATAATTTTT
ATAAGTAGAAAATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCA
AGAATCTGTAATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTAT
CCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACN
TTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGAT
GTGATAAAAGAATTGTTGCATATGGAAAAGAAGGTTTTGTTTTTTGAGCT
TATGTTTCACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATA
TTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTA
TTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAA
GTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAAT
TGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAA
TAATTTATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGC
TTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAAT
ATAGGTTTTAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTT
TCAATTACTATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTT
ACAAATATATCATAATACAGTAGCTACATCTTACTGAATAATATTATTTC
TGACTTCAGGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTT
GAGAAGATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGA
GCCAGGTAAAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCT
TCAACCCTTTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAA
GTCCTGACCACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGA
GTACAAAAATATCTTTTCAATGGTACAAAAACCATTGCCTAACTCTCAAG
TTAAAACCTTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTG
GAAAGGTTAAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATC
TAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGT
GGAACATATAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATT
TCTGCCAACTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATT
CGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTC
TGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAAT
TTCTCGACTGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTG
CTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCG
ATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATG
CACAATTATAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAA
AGAAACTTTGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCA
AAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATAC
GAGGTTTGTATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATAT
TTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAG
TTATATTTCTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATG
AAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAA
ACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGGTAAGTTC
CTTCCTCAAGAACTATTTTTGAAATTAATATCATAAGATCTTTCAAGTGA
CATTATGGAACATAAAAAATAACAGAACTTGATTTTGATAATTATACTGT
TTTGTTTTTATGATTCAGCTTCCATGGCATAATTCAGGTGGAAATGAGAA
GTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTAAAATTCAATACATTT
TTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATTACTTCAAAACAATTT
TAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCTAAAATCATACCTTGT
TAGCATTACGAGTTTCAGGACTTCTATGTGTTACTTTGTTATTGTTTTAA
TCAATTAGGTTTGTATGGTATTCAATGCAGGAGAATTATCTTTGATCGAG
TATGGTCAAAATGAAGTGTTAGCTACAGTCAGAACAGAATTCATGAACCC
TCATCTTATAAGGTAATGATTTTTCAAATGCAGATATGAAACGATTGTGA
AATGTATTCTAGGGTTATGATATTTAGAATTTGATTTTTGAATAGTCTAT
TCCATTAAACAAATTTCTTTAGATATTTCAGAATAATTTACCCTGCTGCC
TCACATTCCTGCCTTGGTATTTTTACCGGAAAGAATTGAAACTCCATTCT
TTCTTACCAGCCATCCCTCTGTAAGAACTAGACTGGACGCTAGTCAGTAT
GATTCTCAATAGCAGTATTTCTTGACTTAACTTTTTCAGCGTACGTTTGA
ATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTATTTG
ATTGACCTGAAAACTATATGTGTCAGTAAGTAAACGTTTTGTAAAAAATC
GACTATTTTGGCATTATTAGCAGCATTTCTCATTTCTATCGGGTGAATAC
AGATTTGAAATATTTGGGCTATTATGCTAAGCTCAGTTGTAAATTAGCCT
TAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTTAATTTTCAGTGGACT
TGATGTCAGGGATGGTTGTAGCCAATATTTCACATGATGTCAAAATTGAC
TGGTTAGAGGTACTCCACTCTCATCTCTTATTGTCTCTAAGTTATGAATT
TCCAAGATAATATATTTATATTTAGATGCAAATCTCAAGAGTTTGAGTGG
TTGACAAATCTTGAATTTTCTCTGTTTATAGATGAATGAGACTGGAAAGA
AGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGTAATTTAGATAATTTC
CGATACTCTTCCTCAAATTAGGACAGTTGTTTTAAAGTGTGAAGTGATTT
CTGGTTTCAACTTCTAATTATAGTACACTTACCTCTCAACTTTTAGTTAT
TATTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGC
TCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAG
AAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTA
TCGTTCCCATCAAAGTAAGAGACCATTTTGTTCATTTCCTCTCAAAGGCT
TAACGGCGATCAAAAATAAACTATTTAAAAACTATTTTTTATGTCTTTTG
ATTCTTTCTAATGACTTGTAATAATGACTTGTAATTTGAGGGGTCGTTTG
TTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCTAAATGCTAAAATATT
ACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATGAGGGTATTAAATCAT
CATAAAGATATCATAAAGAAATCTTTCTTTTATCAATTTATTAACGATCG
AAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAGAAAGGTGGTCAACAA
TCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTGAGCTTACAGTGTGTG
ATTTCTTTTTGTGGGGTTACACGAAACAAGAAATCTGGGAGCAACTCACA
AATTTGCAATTCCAGACCCTTGATCAATGAAAGCTTCAATCAAATATGAA
GACTTGGCAAATCGATTTTATATTATTTTCTCATGATAAAAAATTACATT
AATTGACTTTGTGACCCTTGTTTTACACGGTTTAGCCTACGATCGAGGCA
CCCTTATTCTGGATTTGTTATTCGAATTTCAAATCAAAGTTGAAAAGACA
CTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCATGTTTAGGGTGACATC
ACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTGATCGTACAAGAAGG
TGTACAATCGATCAATTACACATTAGACGAAGGGCTAATCGAGTTTGGAA
CTGCTATGGAAGATGGTGATTATGCTAGGTTTGTCTTATTGGTTATTTTA
ATTAGATTTTAAGACATTGATCTTCTAATGCTGCAGCAAATTTTTTAACA
TAAACAAACTTATTAAGATAAGGGTTATTTTTTATTGAGATTTTCTTCTC
AAAATGCTTCAACTGAGAGATTTTACCTGTCGTCTTTTCTTCGTTGTATT
ACTTTTTTTTGCTCAGAAATCTGATATAAAATTGTATTTTGTTCAGGGCT
GTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATGTG
GAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCCG
AAAGGTAAGACATAAATATGATCCAACAATCATGATTCAATGCATAGTCC
GAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGATTCTGTAATGGGGTT
CTTAAACTTTTCAAAATATATTTTTGCTTTGTAGGTGTTTTGCTGCACTA
GGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATCAACGACTTGATCGA
TGAACTGAACCCAAGTTATGGAGATCCTATGTATCATCCGACTATTCGCG
CCAAACTGGCCATTTTTGAGAAACAATTCAAACTTGCAGAAAGTATTTAC
TTGGAACAAGGACAAGTTGATGAAGCGATGGAGATGTACCAAGAAGTTCA
CAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAAAAGACATCCAGAAC
TAGAGAACCTTAGAAGCTATTACTTGCAATATTTGATGAAGTCAGGCCAA
GAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001236-exon-sc0000007-1575043694:1147551..1147793TCONS_00001236-exon-sc0000007-1575043694:1147551..1147793Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1147213..1147356TCONS_00001236-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1146533..1146645TCONS_00001236-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1146360..1146399TCONS_00001236-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1146129..1146197TCONS_00001236-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1145570..1145649TCONS_00001236-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1143780..1143867TCONS_00001236-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1143435..1143537TCONS_00001236-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1143110..1143342TCONS_00001236-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1141089..1141184TCONS_00001236-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1140241..1140303TCONS_00001236-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1140002..1140100TCONS_00001236-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1139822..1139875TCONS_00001236-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1139532..1139635TCONS_00001236-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1139169..1139254TCONS_00001236-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1138935..1138999TCONS_00001236-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1138765..1138812TCONS_00001236-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1138480..1138647TCONS_00001236-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1137666..1137802TCONS_00001236-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1137340..1137447TCONS_00001236-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1136849..1137209TCONS_00001236-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1147551..1147793TCONS_00001236-exon-sc0000007-1510915933:1147551..1147793Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1147213..1147356TCONS_00001236-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1146533..1146645TCONS_00001236-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1146360..1146399TCONS_00001236-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1146129..1146197TCONS_00001236-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1145570..1145649TCONS_00001236-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1143780..1143867TCONS_00001236-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1143435..1143537TCONS_00001236-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1143110..1143342TCONS_00001236-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1141089..1141184TCONS_00001236-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1140241..1140303TCONS_00001236-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1140002..1140100TCONS_00001236-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1139822..1139875TCONS_00001236-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1139532..1139635TCONS_00001236-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1139169..1139254TCONS_00001236-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1138935..1138999TCONS_00001236-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1138765..1138812TCONS_00001236-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1138480..1138647TCONS_00001236-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1137666..1137802TCONS_00001236-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1137340..1137447TCONS_00001236-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1136849..1137209TCONS_00001236-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1147551..1147793TCONS_00001236-exon-sc0000007-1491911889:1147551..1147793Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1147213..1147356TCONS_00001236-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1146533..1146645TCONS_00001236-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1146360..1146399TCONS_00001236-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1146129..1146197TCONS_00001236-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1145570..1145649TCONS_00001236-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1143780..1143867TCONS_00001236-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1143435..1143537TCONS_00001236-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1143110..1143342TCONS_00001236-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1141089..1141184TCONS_00001236-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1140241..1140303TCONS_00001236-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1140002..1140100TCONS_00001236-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1139822..1139875TCONS_00001236-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1139532..1139635TCONS_00001236-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1139169..1139254TCONS_00001236-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1138935..1138999TCONS_00001236-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1138765..1138812TCONS_00001236-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1138480..1138647TCONS_00001236-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1137666..1137802TCONS_00001236-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1137340..1137447TCONS_00001236-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1136849..1137209TCONS_00001236-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147793 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138542	0	0.639298	1.2522	0.760272	1.03367	0.726659	0.678112	0.237178	0.434226	0.140403	0.646267	0	0.0972072	0.0786444	0.253254	0	0.108342	0	0.154045	0	0.253974	0.161596	0	1.36444	2.1633	0	0	0	0
Blast
[Close]
BLAST of TCONS_00001236 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.1 bits (2818), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 1 
Query:  205 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2481
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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