TCONS_00001240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001240
Unique NameTCONS_00001240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001240 ID=TCONS_00001240|Name=TCONS_00001240|organism=Clytia hemisphaerica|type=transcript|length=1447bp
CGGATGTTTTGGCTgccatttttcatgtttttgccAAAACTCTCATAAGT
CATTCTCTACTTTGAAGAGGATAGAATATTTTTCACGCTTAGTGATGTAA
AAAGAGCCTACATATAATTACGTCACTACGCACTTGTAAGCTTAGAATGA
TTTTCTCTCCTCTTAAAGCAGTATGCATGTGCGAttttaaattgaatttc
ttttgcatAGGTCGATGTGCCCTATCTgtgaattgaataatcgagcaTAT
CTGACCTCCTTTGCAATTTATCTCAACTTGCTACGTGAAAATATTCCAGT
GTGGCCAGCGACCCATCATTTTGCTCGCATGGGGATTTCAAAAACGGACA
GTTTTCATTTCAAGGAGATTTTTGCAGCATGACGCGGCACGCGTGCTTAC
AGATTTTGATGAATgagaaaacaaacaaagaaagtaCTTTTTTCTCAGCC
AATCAGATGAGTTTACAAGGATCAGAGGAAAGGGTATAAAAGCCGTACTC
TGTCAAGTAATTTTCATTCAATCGAGTACTTCACTAGAAACCAATCGGTA
CATTTTGTTGTGGCATTTTTTTTCTCGGACACGAAAGGAAAACCTTCGAA
ACATCAACATGACGACATTCATCAGCTTCACTCAAATCTTCTTCGTACTT
TTCGCCATAACACAATCAACAACAGCTTCATCAATTGACTGTTTACAAAA
GTGTTTCACAGACCACGACACTTGTATCCATAGTGCCACCTTATTACCCG
ACATTCGTAATTGTTCGGAGAAAGTGAACCGATGCCGTACGTCTTGTGTC
GTTCGCCGAAAACGGACTTTGCATCCAAGACACCTTGCTTTCTCTAGAGA
AGAGCTTTCACAACAGGCTTTGAGACATCAATGTATGCAAACTTGCAAAG
CCGGCTTCAAAGGATGCAACAAGAAAGCCGTGGGATCAGAATTATTCTTA
TGTTTTCGTAACTATAGAAACCAATGCCGCACAAAGTGTTCTTTCTATAA
GAAGACATTTGAAAGCAACAAGCAAAGAAAGCTTGgggaaaagtttcaaa
aaatcatcaaaggAAAACAGAGGTAATCATCCTGCCTCTGCAAAAACATT
TAGAACattatttaaaatttaatttattttacagTATTATATGAAAAACT
AAAACTTGACAAACATAGATGACAAGGAGCTAGCTTCTCAGGCTAGTTTC
TACTATATTGCTATTTAAATATGaaatttctatatatttttgtaaatttt
tgcaaatttttgctactttaaaatatttttatttgaaagagtttatttta
tttataactTAAGAAAAGTTAGTATTAGTTTATAGAGAAATTTTGGACAC
GTTGGTGTAAAACTAGTTTGCTGGCTTGACTTTTTTTCAGCCTTTATTAT
ACGTTGATCAATTTTTTGTTATATAACTATGATATATTATAGTCAAG
Run BLAST on NCBI

transcript from alignment at sc0000007:1186214..1187864-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001240 ID=TCONS_00001240|Name=TCONS_00001240|organism=Clytia hemisphaerica|type=transcript|length=1651bp|location=Sequence derived from alignment at sc0000007:1186214..1187864- (Clytia hemisphaerica)
CGGATGTTTTGGCTGCCATTTTTCATGTTTTTGCCAAAACTCTCATAAGT
CATTCTCTACTTTGAAGAGGATAGAATATTTTTCACGCTTAGTGATGTAA
AAAGAGCCTACATATAATTACGTCACTACGCACTTGTAAGCTTAGAATGA
TTTTCTCTCCTCTTAAAGCAGTATGCATGTGCGATTTTAAATTGAATTTC
TTTTGCATAGGTCGATGTGCCCTATCTGTGAATTGAATAATCGAGCATAT
CTGACCTCCTTTGCAATTTATCTCAACTTGCTACGTGAAAATATTCCAGT
GTGGCCAGCGACCCATCATTTTGCTCGCATGGGGATTTCAAAAACGGACA
GTTTTCATTTCAAGGAGATTTTTGCAGCATGACGCGGCACGCGTGCTTAC
AGATTTTGATGAATGAGAAAACAAACAAAGAAAGTACTTTTTTCTCAGCC
AATCAGATGAGTTTACAAGGATCAGAGGAAAGGGTATAAAAGCCGTACTC
TGTCAAGTAATTTTCATTCAATCGAGTACTTCACTAGAAACCAATCGGTA
CATTTTGTTGTGGCATTTTTTTTCTCGGTAAGTTCCTGTTTCAGCATTTC
AATCTGTAGTATATGAAATTTTGTGTTATGTTGTCATGAGGTTACTGATA
AGACTACCAACAATTTGACCAATCCCTAAATGTTTCTTCTCCACCTTCAC
CAGCCGTCATTCTCTTTTGGTCTTAAAACTGTTGTCTTGGTAACCGTTCT
TAAAAACTTTTTACTTTTGTTTTCCTTACAGGACACGAAAGGAAAACCTT
CGAAACATCAACATGACGACATTCATCAGCTTCACTCAAATCTTCTTCGT
ACTTTTCGCCATAACACAATCAACAACAGCTTCATCAATTGACTGTTTAC
AAAAGTGTTTCACAGACCACGACACTTGTATCCATAGTGCCACCTTATTA
CCCGACATTCGTAATTGTTCGGAGAAAGTGAACCGATGCCGTACGTCTTG
TGTCGTTCGCCGAAAACGGACTTTGCATCCAAGACACCTTGCTTTCTCTA
GAGAAGAGCTTTCACAACAGGCTTTGAGACATCAATGTATGCAAACTTGC
AAAGCCGGCTTCAAAGGATGCAACAAGAAAGCCGTGGGATCAGAATTATT
CTTATGTTTTCGTAACTATAGAAACCAATGCCGCACAAAGTGTTCTTTCT
ATAAGAAGACATTTGAAAGCAACAAGCAAAGAAAGCTTGGGGAAAAGTTT
CAAAAAATCATCAAAGGAAAACAGAGGTAATCATCCTGCCTCTGCAAAAA
CATTTAGAACATTATTTAAAATTTAATTTATTTTACAGTATTATATGAAA
AACTAAAACTTGACAAACATAGATGACAAGGAGCTAGCTTCTCAGGCTAG
TTTCTACTATATTGCTATTTAAATATGAAATTTCTATATATTTTTGTAAA
TTTTTGCAAATTTTTGCTACTTTAAAATATTTTTATTTGAAAGAGTTTAT
TTTATTTATAACTTAAGAAAAGTTAGTATTAGTTTATAGAGAAATTTTGG
ACACGTTGGTGTAAAACTAGTTTGCTGGCTTGACTTTTTTTCAGCCTTTA
TTATACGTTGATCAATTTTTTGTTATATAACTATGATATATTATAGTCAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000664XLOC_000664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001240-exon-sc0000007-1575043694:1187288..1187864TCONS_00001240-exon-sc0000007-1575043694:1187288..1187864Clytia hemisphaericaexon
TCONS_00001240-exon-sc0000007-1575043694:1186214..1187083TCONS_00001240-exon-sc0000007-1575043694:1186214..1187083Clytia hemisphaericaexon
TCONS_00001240-exon-sc0000007-1510915933:1187288..1187864TCONS_00001240-exon-sc0000007-1510915933:1187288..1187864Clytia hemisphaericaexon
TCONS_00001240-exon-sc0000007-1510915933:1186214..1187083TCONS_00001240-exon-sc0000007-1510915933:1186214..1187083Clytia hemisphaericaexon
TCONS_00001240-exon-sc0000007-1491911889:1187288..1187864TCONS_00001240-exon-sc0000007-1491911889:1187288..1187864Clytia hemisphaericaexon
TCONS_00001240-exon-sc0000007-1491911889:1186214..1187083TCONS_00001240-exon-sc0000007-1491911889:1186214..1187083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1186214..1187864 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.270304	0.640792	0	0	0.796916	0.159485	0.0662964	0.533966	0.393944	0	0.227632	0.366426	0	0	0.213071	0.216268	0.193796	0.567161	0	0	1.07601	0	0	0.293319	1.11236	0.226664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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