|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001242 ID=TCONS_00001242|Name=TCONS_00001242|organism=Clytia hemisphaerica|type=transcript|length=3213bpRun BLAST on NCBI protein sequence of TCONS_00001242-protein >TCONS_00001242-protein ID=TCONS_00001242-protein|Name=TCONS_00001242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=680bp MNGDVEMTDASGNEKVAILDAGAQYGKVIDRRVRELSIETIMLPLDTSPDRun BLAST on NCBI transcript from alignment at sc0000007:1188930..1201261- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001242 ID=TCONS_00001242|Name=TCONS_00001242|organism=Clytia hemisphaerica|type=transcript|length=12332bp|location=Sequence derived from alignment at sc0000007:1188930..1201261- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:1188930..1201261- >TCONS_00001242 ID=TCONS_00001242|Name=TCONS_00001242|organism=Clytia hemisphaerica|type=CDS|length=34731bp|location=Sequence derived from alignment at sc0000007:1188930..1201261- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001242 vs. Swiss-Prot (Human)
Match: GUAA (GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1) HSP 1 Score: 779.245 bits (2011), Expect = 0.000e+0 Identity = 374/690 (54.20%), Postives = 497/690 (72.03%), Query Frame = 2
Query: 41 NGDVEMTDASGNEK---------VAILDAGAQYGKVIDRRVRELSIETIMLPLDTSPDVLRSKNVRAVIVSGGPGSVYEKDSPNWHPELMHSGLPIFGICYGMQLMNRDSKGCVTSGMSREDGQFKVQLELSSPLYSGLNKEEDFLLTHADVCLQVGDGVQINAKVGETIVGVENREKKLYGVQFHPEVDLSPKGIDLFKNFLLNIAGCQQNFDLGSRETECIAEIQAKCGATNKVLCLVSGGVDSSVCCALLHKAIGVERVVAVHIDNGFLRKNESETVKESLENIDLKLHVVNESHRFYHATTRTPVRHGQNTVNVEIGP-LNIVTAPEEKRKIIGDTFIKVFEDVLSILKLDVETTLLAQGTLRPDLIESASHLASSNADTIKTHHNDTELVRQLREKGRVIEPLKDFHKDEVRQIGRDLGLPEQLVERHPFPGPGLAVRLLCAEEKFCCKDFSDISNTLNFIVNFAQALSKPHPLMNKIQQTLSTTDSEILRSITSKQKYTSTLLPIKTVGVQGDCRTYSYVAALSSDDEPCWESLMQFAKIIPKLC-PVNRVTYVFGGSVKHPVQEITRTTLTVNVLKTLRQVDFLANKVLSETGAVKQITQMPVVLIPVHFDIDPVSRDPVCQRSVVLRPFLTNDFMTGVAAQPGKDVPLEVVHKMVNSIKTVPGISRVLYDLTSKPPGTTEWE 2077
NGD ++ +A G+ K V ILDAGAQYGKVIDRRVREL +++ + PL+T ++ + RA+I+SGGP SVY +D+P + P + G P+ GICYGMQ+MN+ G V REDG F + ++ + L+ GL KEE LLTH D +V DG ++ A+ G + G+ N KKLYG QFHPEV L+ G + KNFL +IAGC F + +RE ECI EI+ + G T+KVL L+SGGVDS+VC ALL++A+ E+V+AVHIDNGF+RK ES++V+E+L+ + +++ V+N +H FY+ TT P+ T I LN+ T+PEEKRKIIGDTF+K+ +V+ + L E LAQGTLRPDLIESAS +AS A+ IKTHHNDTEL+R+LRE+G+VIEPLKDFHKDEVR +GR+LGLPE+LV RHPFPGPGLA+R++CAEE + CKDF + +N L + +F+ ++ KPH L+ +++ + D E L ITS + LLPIKTVGVQGDCR+YSYV +SS DEP WESL+ A++IP++C VNRV Y+FG VK P ++T T LT VL TLRQ DF A+ +L E+G +I+QMPV+L P+HFD DP+ + P CQRSVV+R F+T+DFMTG+ A PG ++P+EVV KMV IK +PGISR++YDLTSKPPGTTEWE
Sbjct: 5 NGDSKLENAGGDLKDGHHHYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASVKKPHTLLQRVKACTTEEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPRMCHNVNRVVYIFGPPVKEPPTDVTPTFLTTGVLSTLRQADFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFITSDFMTGIPATPGNEIPVEVVLKMVTEIKKIPGISRIMYDLTSKPPGTTEWE 693 The following BLAST results are available for this feature:
BLAST of TCONS_00001242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.