TCONS_00001250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001250
Unique NameTCONS_00001250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001250 ID=TCONS_00001250|Name=TCONS_00001250|organism=Clytia hemisphaerica|type=transcript|length=484bp
TTTCAgtcaaataaaaatcaaaacttatgTTTCATCGCATCTTGAGATCT
CTTTATAAAGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTATGGTT
CACTAGCAATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAAAAAC
TGGTCGGTTATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGAAGAG
GAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTGGTCA
TCCTCTTCTATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCATATCG
GGCACCATCTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGCTGGT
AGTGGTGATGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTATACA
CCAAAAACAACGAGCTATTGCCGATACTACTGAATTGATCAATACAGCTT
TTCTGGTGCATCGAAGCATGGTCGATATCGTTGN
Run BLAST on NCBI

transcript from alignment at sc0000007:1294531..1295675-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001250 ID=TCONS_00001250|Name=TCONS_00001250|organism=Clytia hemisphaerica|type=transcript|length=1145bp|location=Sequence derived from alignment at sc0000007:1294531..1295675- (Clytia hemisphaerica)
TTTCAGTCAAATAAAAATCAAAACTTATGTTTCATCGCATCTTGAGATCT
CTTTATAAAGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTATGGTT
CACTAGCAATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAAAAAC
TGGTCGGTTATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGAAGAG
GAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTGGTCA
TCCTCTTCTATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCATATCG
GGCACCATCTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGCTGGT
AGTGGTGATGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTATACA
CCAAAAACAACGAGCTATTGCCGATACTACTGAATTGATCAATACAGGTA
TTTTCAAGTTTCTATTGTAGGAACTCATGTTAAAACACCTCTGTCTCAGT
GCCCCGGTGAGATGTTGTTAGCCAGTGAGGACAAATCAAACGAGCCAATT
TATATGAAATTATTTTGTTTAAGATATCAATTGTTTACTCTTAGGTGCCA
AATAAACGCCCCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCC
CCCCCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCC
CCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCCCCGC
TTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCCCCGCTTGTTAA
TTTTTCGATTTTTTTCTCATTCAGTGGGACCTTATTAGGACCCCCCCCCC
GTTTATTAATTCTTGAAAAAATTCCCAGCTACAAAAAGGAAAATTCCTTG
TTTTACTCTAAAAAGCCTAAATTTAGTCTATTTTGACACCTAAAAGTACA
GCAGCTAAAATCCAATAGAGATTCTCAAATTGCAAGTGCTTTCCTCAGTT
GGGATTAGAGTTTTCTATAGGTTTTAAATGGGGAAGAATTTCCGGGATAT
TTTCTCTCATCGTGGACGATCCTTTGGCCAATTTTACTTTCGACTATTTT
ACTCGTAGCTTTTCTGGTGCATCGAAGCATGGTCGATATCGTTGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000668XLOC_000668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001250-exon-sc0000007-1575043694:1295229..1295675TCONS_00001250-exon-sc0000007-1575043694:1295229..1295675Clytia hemisphaericaexon
TCONS_00001250-exon-sc0000007-1575043694:1294531..1294567TCONS_00001250-exon-sc0000007-1575043694:1294531..1294567Clytia hemisphaericaexon
TCONS_00001250-exon-sc0000007-1510915933:1295229..1295675TCONS_00001250-exon-sc0000007-1510915933:1295229..1295675Clytia hemisphaericaexon
TCONS_00001250-exon-sc0000007-1510915933:1294531..1294567TCONS_00001250-exon-sc0000007-1510915933:1294531..1294567Clytia hemisphaericaexon
TCONS_00001250-exon-sc0000007-1491911889:1295229..1295675TCONS_00001250-exon-sc0000007-1491911889:1295229..1295675Clytia hemisphaericaexon
TCONS_00001250-exon-sc0000007-1491911889:1294531..1294567TCONS_00001250-exon-sc0000007-1491911889:1294531..1294567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1294531..1295675 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.20073	1.69527	0	2.82034	4.62601	4.48859	5.71106	6.25352	1.99859	15.1952	6.06993	10.9505	9.34832	4.37398	3.10267	0	0	0	0	1.05828	2.00249	0.660495	1.77742	8.93221	8.71745	0	0.399731	1.66914e-06	0
Blast
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BLAST of TCONS_00001250 vs. Swiss-Prot (Human)
Match: DLP1 (Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.657e-20
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 3 
Query:  126 KAITNAEKLVGYPTSYSSLKYLAEEEPANFLGLAKKLVGSGHPLLSTARDLLSQDPXXXXXXXXXXXXXXSKAAG-SGDDLDVLQSELVNGIHQKQRAIADTTELINTAFLVHRSMVDI 479
            + ++ AEK+VGYPTS+ SL+ L  +E +N     +KLVG+ HPLL+TAR L+  D      L GL VLL+SKAAG S  +      ++V+GI+  QR++A+ TELI+ A LVHR +V++
Sbjct:   51 QVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTARGLV-HDSWNSLQLRGLVVLLISKAAGPSSVNTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIVNL 168
The following BLAST results are available for this feature:
BLAST of TCONS_00001250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DLP11.657e-2046.22Decaprenyl-diphosphate synthase subunit 2 OS=Homo ... [more]
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