TCONS_00001305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001305
Unique NameTCONS_00001305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001305 ID=TCONS_00001305|Name=TCONS_00001305|organism=Clytia hemisphaerica|type=transcript|length=365bp
CTTTATGATATCGAATCAGAGGGTTGTCGAAATGGTTTCGTCTTTGGCAA
GGAAAAGAGGTGCAGAGGACAAACCTACGATCCTAAGGATAAATTTTGCC
ACCGATGCCAAGTGTTCTCCCATAATGAGTTTGTGTATTGCGATGGCAGC
CTCTATCCTAAGACATCCCGAAAACAAATTTAAAGATCCCTATGATACCT
TCGAAATTCATTTACCATCGTATCAATCAATACCAAGTCACGTGACGTTG
TATGGATGAACTATtttgtttgcaaaataaattattatgaaaatttaaaa
attatttataagacAAGTATTGTGTTAGTAAAACTTTCTGTATCCAAGAA
TTTATAATTTGTTAT
Run BLAST on NCBI

transcript from alignment at sc0000007:1343207..1343571

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001305 ID=TCONS_00001305|Name=TCONS_00001305|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at sc0000007:1343207..1343571 (Clytia hemisphaerica)
ATAACAAATTATAAATTCTTGGATACAGAAAGTTTTACTAACACAATACT
Tgtcttataaataatttttaaattttcataataatttattttgcaaacaa
aATAGTTCATCCATACAACGTCACGTGACTTGGTATTGATTGATACGATG
GTAAATGAATTTCGAAGGTATCATAGGGATCTTTAAATTTGTTTTCGGGA
TGTCTTAGGATAGAGGCTGCCATCGCAATACACAAACTCATTATGGGAGA
ACACTTGGCATCGGTGGCAAAATTTATCCTTAGGATCGTAGGTTTGTCCT
CTGCACCTCTTTTCCTTGCCAAAGACGAAACCATTTCGACAACCCTCTGA
TTCGATATCATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000709XLOC_000709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001305-exon-sc0000007-1491911889:1343207..1343571TCONS_00001305-exon-sc0000007-1491911889:1343207..1343571Clytia hemisphaericaexon
TCONS_00001305-exon-sc0000007-1510915933:1343207..1343571TCONS_00001305-exon-sc0000007-1510915933:1343207..1343571Clytia hemisphaericaexon
TCONS_00001305-exon-sc0000007-1575043694:1343207..1343571TCONS_00001305-exon-sc0000007-1575043694:1343207..1343571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1343207..1343571 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.221772	0.772494	0.889326	0.30669	0.727053	0.584772	1.09491	0.383287	0.474763	0.230408	0.151461	0	0	0	0	39.177	72.1204	0	0	214.31	210.315	2.11968	4.03287	2.44172	5.85667	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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