TCONS_00001373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001373
Unique NameTCONS_00001373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001373 ID=TCONS_00001373|Name=TCONS_00001373|organism=Clytia hemisphaerica|type=transcript|length=3197bp
ttagaaaaagacaaattgaaatgaaatgaaaataatatcaAGATTAATAC
CAAAATGAAAGAATAACCATTAGACGATGAGCAGTACCAGTACTAGTCCT
ACTGAGTTGGGTGCAAGTACGTGCAAAGATATCCCAAGACGACGTAGAAG
CAGACATCGCAGTCGAAGTACCTGTAGTACTGACAgtaaagacacccctg
tctcttttCAACAGAAAAGTGAacacaattttcaaacatggAATGAAAAC
CTCACCATAATACCTTCAGTCTTTCGTCATGACTCGGAAGGAATACCAAT
CGGCACCCAAGATAAGGGTGGCCAGGCCGCACTCAAAGGTCCTCAAAAGG
AGAAAGATTTCttggataaaatgaaagaatttggTGTGGGTAAGGCTGCT
ATTGTATTACACAGTCTTAAATTTCGGGAACTTTTTGAGCATTACAATaa
acttttaacaaaacatTCATCTATTCACAAACATCATCAGCTATACACTA
ATGAAGCTTTCCGTAAAGCAAGGCATTACGCGCCAGAGATGAAAGAATTA
TCACAGGAAGctgaagttgattttctgaTGTTGGTAAAATCTAAAGGATT
CTTTTTGTTCGAGGTCAAATCCTCCATTGGGGAGCGGTATCATGCTAAAG
AACAATTAGTGATCCGTCGCGCTCTAATGAACGTCCTAATAGAAGATGCG
ATTGAAGAAGGGAAACTAGGCGAATGGACTTGTCATGATCTACCGAAATA
TTGCGCTTCAATCTTCCCATCATCTCAAAGACCAGAAACTTTCTTTGACG
ACGAATATTTCGAAAATGATTTCTCAAACCCTTTGGAATGGTTAGATTGG
TGGATGCTGTTGGTAGACTCGAAACCAGACCTCCAACCTGAAACCGatgt
tttattttccaaaattgtttcaAGGATCATGTACACTGTTTCAGACTACA
TGCCTTTGACCTTGAGTGAAGGCATTGCCGACATAGGTGATGACATCCAA
CAACAGAAACTATTGAAAACATTTGGCACCGTACCCAGGGTAACGTATGA
TATTGATAATAACTCAGAACCAAAATCGACCAAATTAAGCAACGCTCAAG
TAGCAGTATTGAATGGATTTCGTCGACAAGTTATTGTCGGTCCAACTGGA
AGCGGAAAATCACTTATCATAGCTGCCAAGGCCTTACAGTTGTCCAGCCA
AAAGAAAAATTGTCTGTTGATTTGTGGTTTTGATTGCGTTGGGTTGAAAC
ATTGGTATATCAAAGTGATGGGTTTGAATGAGTGTTATGGACATGATCAT
TTAGAATATGTCTATGTTTCTACGTTGAAAGAACTGTTGGAAAACAAAGA
GGTGAACCCTGTCGAGCATTACTGCTTGATTGACGAGCTTGATGAAATTA
TAGAAGGACAGAAAGGGCCTTTACTTGTTGAGTTTTGGAACAATGTATTA
CGTAAACCTTTTGCGTGGATGGCTACGGATAAAGAATCAACGTTGCAGAG
AGTTTTACGTGATATGGTTGATTTTGACTCAAAAGACCTTTTCAAGGTGT
CACTTTTGAGTCAAGTACTGAGAAACACTGTCAGTATTTTTAAAGAGTTT
TCAGGGAGAATGGACTCGACTCTTCGTGATTTGGATATTGAAGTCGGGCA
TGATGTTGAAGGGTTACCCGTTGATCGATCACATGTTTTGAATGTTGAAA
AGATGTCTCAGAAAGTTATAGAGATTATTAGAGTGTTGACGCAAAAACGT
ACTGAATCGAGTATCAATATTCGAGAAATGGATTATCGAGACATATTGGT
TTATGTTACTGCCGACAATTTACAGAAAAATCGTCAGGTTGGTGAAATGT
TGAAAATGTTAAATGATTCAACTATTCCTGTGAAGACCTTTAGAAATTTT
AATTGCGAAGGATTCTCTAAAAAAACGAAGGAACCGCTATCAGACAAAGT
TTTATTGGCATGGACGGAAAGTGATATCTTATCACTTGAATTTGTTGCGG
TAATTTCTTGTGAGATTGGTCGGGAAGCGTCAACTACTGTTTTGAGTCGT
GCTGTATCGCAACTGNTGTTATGGACATGATCATTTAGAATATGTCTATG
TTTCTACGTTGAAAGAACTGTTGGAAAACAAAGAGGTGAACCCTGTCGAG
CATTACTGCTTGATTGACGAGCTTGATGAAATTATAGAAGGACAGAAAGG
GCCTTTACTTGTTGAGTTTTGGAACAATGTATTACGTAAACCTTTTGCGT
GGATGGCTACGGATAAAGAATCAACGTTGCAGAGAGTTTTACGTGATATG
GTTGATTTTGACTCAAAAGACCTTTTCAAGGTGTCACTTTTGAGTCAAGT
ACTGAGAAACACTGTCAGTATTTTTAAAGAGTTTTCAGGGAGAATGGACC
CGACTCATCGTGATTTGGATATTGAAGTCGGGCATGATGTTGAAGGGTTA
CCCGTTGATCGATCACATGTTTTGAATGTTGAAAAGATGTCTCAGAAAGT
TATAGAGATTATTAGAGTGTTGACGCAAAAACGTACTGAATCGAGTATCA
ATATTCGAGAAATGGATTATCGAGACATATTGGTTTATGTTACTGCCGAC
AATTTACAGAAAAATCGTCAGGTTGGTGAAATGTTGAAAATGTTAAATGA
TTCAACTATTCCTGTGAAGACCTTTAGAAATTTTAATTGCGAAGGATTCT
CTAAAAAAACGAAGGAACCGCTATCAGACAAAGTTTTATTGGCATGGACG
GAAAGTGATATCTTATCACTTGAATTTGTTGCGGTAATTTCTTGTGAGAT
TGGTCGGGAAGCGTCAACTACTGTTTTGAGTCGTGCTGTATCGCAACTGT
TTCGCGTACACCTTTCCACTTGAATTTGGGGGAAAATATTTAAGTACTTT
ACGGGAAATTAGTTTTGGCGAGAACTATGCCTAATTTCgcctaatttaat
tttttcaataattttgatgtttgtCAAAATTACTTTAGCCGAATAAAATA
ACATACATACATGAATCTTTCTTTCATAGgggtttaattttttcatttat
tttagagcggcgattttgatttttctgataGCGGCTGAgacaaaaaatct
atttttctttctgagGGGACTGATAGTTTTTGGACTTTAGTAAACATAGG
AATTACAAGTTCTCATTTTTAATGCttctaataaaaataaattaaaa
Run BLAST on NCBI

transcript from alignment at sc0000010:703337..707082+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001373 ID=TCONS_00001373|Name=TCONS_00001373|organism=Clytia hemisphaerica|type=transcript|length=3746bp|location=Sequence derived from alignment at sc0000010:703337..707082+ (Clytia hemisphaerica)
ttagaaaaagacaaattgaaatgaaatgaaaataatatcaAGATTAATAC
CAAAATGAAAGAATAACCATTAGACGATGAGCAGTACCAGTACTAGTCCT
ACTGAGTTGGGTGAGTTGTATACACATAGACAATGTTGGTAAAATACAGA
ATCTGGCTAAAACTATCAGTCAAAATCTCCCAAGAACACAACTTCTGATT
TTTGTCAGAAGTAAATTAGCATACCTTGGTAGCCAGCAAATACGCTCCAC
ATACTGGAATCAGCAGAGGGGAAGTGTGCGACGTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggtccccccc
cccccccccctcatagATGTGATGTCAGATCAATTTATGTCCATACCAAG
ATTTTTCCAGCCGAGATTTCTCCAGTGAATTGAATTGAGTTATTGAGTTG
TCTGTCTCTGTCTCTACtataattttttaaagtatttatgtttttaaaag
aGAACTACCTGGTTGACGCAAGATATCTACTATTTCACGTGAATCTTTTT
TATCTTTAGGTGCAAGTACGTGCAAAGATATCCCAAGACGACGTAGAAGC
AGACATCGCAGTCGAAGTACCTGTAGTACTGACAgtaaagacacccctgt
ctcttttCAACAGAAAAGTGAacacaattttcaaacatggAATGAAAACC
TCACCATAATACCTTCAGTCTTTCGTCATGACTCGGAAGGAATACCAATC
GGCACCCAAGATAAGGGTGGCCAGGCCGCACTCAAAGGTCCTCAAAAGGA
GAAAGATTTCttggataaaatgaaagaatttggTGTGGGTAAGGCTGCTA
TTGTATTACACAGTCTTAAATTTCGGGAACTTTTTGAGCATTACAATaaa
cttttaacaaaacatTCATCTATTCACAAACATCATCAGCTATACACTAA
TGAAGCTTTCCGTAAAGCAAGGCATTACGCGCCAGAGATGAAAGAATTAT
CACAGGAAGctgaagttgattttctgaTGTTGGTAAAATCTAAAGGATTC
TTTTTGTTCGAGGTCAAATCCTCCATTGGGGAGCGGTATCATGCTAAAGA
ACAATTAGTGATCCGTCGCGCTCTAATGAACGTCCTAATAGAAGATGCGA
TTGAAGAAGGGAAACTAGGCGAATGGACTTGTCATGATCTACCGAAATAT
TGCGCTTCAATCTTCCCATCATCTCAAAGACCAGAAACTTTCTTTGACGA
CGAATATTTCGAAAATGATTTCTCAAACCCTTTGGAATGGTTAGATTGGT
GGATGCTGTTGGTAGACTCGAAACCAGACCTCCAACCTGAAACCGatgtt
ttattttccaaaattgtttcaAGGATCATGTACACTGTTTCAGACTACAT
GCCTTTGACCTTGAGTGAAGGCATTGCCGACATAGGTGATGACATCCAAC
AACAGAAACTATTGAAAACATTTGGCACCGTACCCAGGGTAACGTATGAT
ATTGATAATAACTCAGAACCAAAATCGACCAAATTAAGCAACGCTCAAGT
AGCAGTATTGAATGGATTTCGTCGACAAGTTATTGTCGGTCCAACTGGAA
GCGGAAAATCACTTATCATAGCTGCCAAGGCCTTACAGTTGTCCAGCCAA
AAGAAAAATTGTCTGTTGATTTGTGGTTTTGATTGCGTTGGGTTGAAACA
TTGGTATATCAAAGTGATGGGTTTGAATGAGTGTTATGGACATGATCATT
TAGAATATGTCTATGTTTCTACGTTGAAAGAACTGTTGGAAAACAAAGAG
GTGAACCCTGTCGAGCATTACTGCTTGATTGACGAGCTTGATGAAATTAT
AGAAGGACAGAAAGGGCCTTTACTTGTTGAGTTTTGGAACAATGTATTAC
GTAAACCTTTTGCGTGGATGGCTACGGATAAAGAATCAACGTTGCAGAGA
GTTTTACGTGATATGGTTGATTTTGACTCAAAAGACCTTTTCAAGGTGTC
ACTTTTGAGTCAAGTACTGAGAAACACTGTCAGTATTTTTAAAGAGTTTT
CAGGGAGAATGGACTCGACTCTTCGTGATTTGGATATTGAAGTCGGGCAT
GATGTTGAAGGGTTACCCGTTGATCGATCACATGTTTTGAATGTTGAAAA
GATGTCTCAGAAAGTTATAGAGATTATTAGAGTGTTGACGCAAAAACGTA
CTGAATCGAGTATCAATATTCGAGAAATGGATTATCGAGACATATTGGTT
TATGTTACTGCCGACAATTTACAGAAAAATCGTCAGGTTGGTGAAATGTT
GAAAATGTTAAATGATTCAACTATTCCTGTGAAGACCTTTAGAAATTTTA
ATTGCGAAGGATTCTCTAAAAAAACGAAGGAACCGCTATCAGACAAAGTT
TTATTGGCATGGACGGAAAGTGATATCTTATCACTTGAATTTGTTGCGGT
AATTTCTTGTGAGATTGGTCGGGAAGCGTCAACTACTGTTTTGAGTCGTG
CTGTATCGCAACTGNTGTTATGGACATGATCATTTAGAATATGTCTATGT
TTCTACGTTGAAAGAACTGTTGGAAAACAAAGAGGTGAACCCTGTCGAGC
ATTACTGCTTGATTGACGAGCTTGATGAAATTATAGAAGGACAGAAAGGG
CCTTTACTTGTTGAGTTTTGGAACAATGTATTACGTAAACCTTTTGCGTG
GATGGCTACGGATAAAGAATCAACGTTGCAGAGAGTTTTACGTGATATGG
TTGATTTTGACTCAAAAGACCTTTTCAAGGTGTCACTTTTGAGTCAAGTA
CTGAGAAACACTGTCAGTATTTTTAAAGAGTTTTCAGGGAGAATGGACCC
GACTCATCGTGATTTGGATATTGAAGTCGGGCATGATGTTGAAGGGTTAC
CCGTTGATCGATCACATGTTTTGAATGTTGAAAAGATGTCTCAGAAAGTT
ATAGAGATTATTAGAGTGTTGACGCAAAAACGTACTGAATCGAGTATCAA
TATTCGAGAAATGGATTATCGAGACATATTGGTTTATGTTACTGCCGACA
ATTTACAGAAAAATCGTCAGGTTGGTGAAATGTTGAAAATGTTAAATGAT
TCAACTATTCCTGTGAAGACCTTTAGAAATTTTAATTGCGAAGGATTCTC
TAAAAAAACGAAGGAACCGCTATCAGACAAAGTTTTATTGGCATGGACGG
AAAGTGATATCTTATCACTTGAATTTGTTGCGGTAATTTCTTGTGAGATT
GGTCGGGAAGCGTCAACTACTGTTTTGAGTCGTGCTGTATCGCAACTGTT
TCGCGTACACCTTTCCACTTGAATTTGGGGGAAAATATTTAAGTACTTTA
CGGGAAATTAGTTTTGGCGAGAACTATGCCTAATTTCgcctaatttaatt
ttttcaataattttgatgtttgtCAAAATTACTTTAGCCGAATAAAATAA
CATACATACATGAATCTTTCTTTCATAGgggtttaattttttcatttatt
ttagagcggcgattttgatttttctgataGCGGCTGAgacaaaaaatcta
tttttctttctgagGGGACTGATAGTTTTTGGACTTTAGTAAACATAGGA
ATTACAAGTTCTCATTTTTAATGCttctaataaaaataaattaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000733XLOC_000733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001373-exon-sc0000010-1491911889:703337..703446TCONS_00001373-exon-sc0000010-1491911889:703337..703446Clytia hemisphaericaexon
TCONS_00001373-exon-sc0000010-1510915933:703337..703446TCONS_00001373-exon-sc0000010-1510915933:703337..703446Clytia hemisphaericaexon
TCONS_00001373-exon-sc0000010-1575043694:703337..703446TCONS_00001373-exon-sc0000010-1575043694:703337..703446Clytia hemisphaericaexon
TCONS_00001373-exon-sc0000010-1491911889:703996..707082TCONS_00001373-exon-sc0000010-1491911889:703996..707082Clytia hemisphaericaexon
TCONS_00001373-exon-sc0000010-1510915933:703996..707082TCONS_00001373-exon-sc0000010-1510915933:703996..707082Clytia hemisphaericaexon
TCONS_00001373-exon-sc0000010-1575043694:703996..707082TCONS_00001373-exon-sc0000010-1575043694:703996..707082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:703337..707082 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.5433	0.410833	0.454083	0.355119	4.08954	3.17931	3.89261	3.68335	3.42284	3.4393	2.63443	2.30869	2.10751	1.97844	2.30605	2.62125	1.95027	1.31476	1.66373	1.43964	1.08563	1.12113	0.535897	0.808686	2.14936	2.05433	0.541284	0.411271	0.474428	0.697853
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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