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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001407 ID=TCONS_00001407|Name=TCONS_00001407|organism=Clytia hemisphaerica|type=transcript|length=1537bp
AAATTATTGACGACTAATCGTTCACAAAAGGACTTTTTCATTCGAGaata
agtttaatattttcaaaaagttataatcATCATGAAAATATGTCGTTTTG
AGAGAGAAGATGAATGTTGAACGTTAAAGAGCATCAGCTAAACTGACCAC
AATTGAAGTTGGAaaaaatactgcaggaaaaacTCTTCTTGAAATAACAA
TGAATAGAAttcttttcttcttgttttttNCACTGACCACGACTTAAACA
AGCTCGAGAATGGAGTAtaacaaaatttatttcatcCTTTTGGTGGTTTC
AGCTACTATAAAAGATTCTCTATTAATCAAATGTTATGACTGTTCTGGAA
CTCACGCGTATTGTAACAACACAAGAAAAACAAAGACTTGTGATGGACCA
CAGTATTCCTGTCTCCTACGATCTGGAAGCACCAAGATTCGAGTTTTAAA
GAACGGTGCTTtagattttgaagtttttagcACTGTAACAAAAACTTGTG
CCGTGGAGAGCAGTTCATATTGTGTGACTCAAAAAGAAATCGACCCTAAA
ATGCTGACCTGTAAGGCTGTGTGGTGTTACGAAGATGGATGTAATTTCAA
CATGAAACAAGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGAAATTG
ACCCATATGGGTGGTATAAGACCTGGACTTCTTCAGCGACAAATGCAACT
GGCTTAAAACTTGATTTAACATTTTATCTGTGTTTGATTTCTGGgttatt
gatttttcttgagtGAAATGAAAACGACATGGATATCCCAGCCAAAATTT
CGAGTCTAGATACCAGACGACGAATGATCATTTTGGAGCATCTTGTCAAA
GTTGGTTCCAAAAAAATTGGCAGTCTGCACATTTTGATACATTTCTGCTT
GAagggaaaaaaatataaagtaatacctcgttggaaagatattcttaACC
GGACTATTTTAAGtcttcaaaatcttttaaaaatttagaaaatggaaatg
aaaaatgaagatgaaaaaattaaagattttttctactggCACAAGAATTT
TTCCGAAACttgaactttttcattttcgaaattttgaaagccttaaaacc
aTCCACTTACGAATATCTTatcaacgaggtattacttgtAGTTATATCTT
TTCTCCTTCTGCAGAAATGTATCAAAATGTGTAGACTGcaaatttttttg
gaacagacttaaaacagaagcagccaccgacctaaaatttgcaaatatct
gctctgatttgccagctggaaaaatttccccgaaattaagaacagttcct
cgttttccaggggagaaatttttacttcagaacagttatatttttccagc
taggaggtaagAAAACTTTCGGAACaggtacgaaattaccaggcgattga
ttttacgcgagttaactattcttatctaccagggctgacgaaatcttata
agaacagatcgctaaattccagctcgacattgaaggacttttaagaacag
aaaattaatttccagctaacagtttaaCTTTAAGTAT Run BLAST on NCBI protein sequence of TCONS_00001407-protein >TCONS_00001407-protein ID=TCONS_00001407-protein|Name=TCONS_00001407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MEYNKIYFILLVVSATIKDSLLIKCYDCSGTHAYCNNTRKTKTCDGPQYS
CLLRSGSTKIRVLKNGALDFEVFSTVTKTCAVESSSYCVTQKEIDPKMLT
CKAVWCYEDGCNFNMKQANRAGQTSQANEIDPYGWYKTWTSSATNATGLK
LDLTFYLCLISGLLIFLE Run BLAST on NCBI transcript from alignment at sc0000010:1144631..1148270+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001407 ID=TCONS_00001407|Name=TCONS_00001407|organism=Clytia hemisphaerica|type=transcript|length=3640bp|location=Sequence derived from alignment at sc0000010:1144631..1148270+ (Clytia hemisphaerica)
AAATTATTGACGACTAATCGTTCACAAAAGGACTTTTTCATTCGAGaata
agtttaatattttcaaaaagttataatcATCATGAAAATATGTCGTTTTG
AGAGAGAAGATGAATGTTGAACGTTAAAGAGCATCAGCTAAACTGACCAC
AATTGAAGTTGGAaaaaatactgcaggaaaaacTCTTCTTGAAATAACAA
TGAATAGAAttcttttcttcttgttttttNCACTGACCACGACTTAAACA
AGCTCGAGAATGGAGTAtaacaaaatttatttcatcCTTTTGGTGGTTTC
AGCTACTATAAAAGGTTTGTGAATACTTTCAAACGCAGTAGTTACGTTTT
GAATAGGATAAGAAATTAGATTTGTTTATCCTCTAGGGAAAACGTTTTTA
TCCCGGAGGGGGAGGGCGAGATgatgggtatgtccgagccaaagttaCTG
GTGATGGAGTTTTGGACCCTTACAGCGACTCAATTTGCtctttaatggtt
tttgtacccctttttgagcgtgtgaaaaagggacccttatggctcatATT
TgaggatttgaaatttttttatatttagtaTTATGGTTAATTCTGTATTC
ATGAAATATAGCCTCACCATTTCGGTTCCTATAGGTATCTTAACATTGTG
TAAAAATTGGTTCAGTGGACTAAGAGAGCTCTTATAATTTCATATGTCAG
CATAGTCTAGTCTTTTCAAAAAGAGCTGAAAATACAGTGCTTTTAGCGAC
CAAAGtggtgaaaattaaaatttttcccctatcggcgcaaaccatggttg
cgcctccttaatCTCTGATAACACTTTAAATGCAACTCAAATTACTATTA
CGATATCGAGATATTGTATATgcaaagaaaaacttcaattttaaaattca
atatGATTCAGGCAGAATCATTCCGAAAAAGAGCCATGCTTGAAGGAAAT
CAGTGgtccaaaatcaattttctcctgtcggcgcaaaccatggttgcgcc
tccttcgTCACTAAATTATTTTCCCCTGCACGTTTGAAATCAAGCTACTT
GTTGCCTTTTATATAATAATGTAGTCCTCCCCACATGAGTGCACAACATT
TTGATATTGAGGCTTATAGGATCACTCACAATATAGAAAGTTACTGTAGT
TAAACCCGATTTCTATATGTGACAAGTCACCATTCAAGTATAAGTAAGTA
TAACCCTCACCTTAATCAATCAATTAGAGtgtagggaaaaaattttagca
aggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCTGACCACTCCCTGAGATCCTAAGAACTGGCTCTCTTATA
AAAGTGAATTCctcttttttttcaacatttgaagtttttcgaatttttta
tttcGGGATGAAAATTTTCTAGCAGGCTTCAAACTATACACATCTACATT
TTAGATTCTCTATTAATCAAATGTTATGACTGTTCTGGAACTCACGCGTA
TTGTAACAACACAAGAAAAACAAAGACTTGTGATGGACCACAGTATTCCT
GTCTCCTACGATCTGGAAGCACCAAGATTCGAGTTTTAAAGAACGGTGCT
TtagattttgaagtttttagcACTGTAACAAAAACTTGTGCCGTGGAGAG
CAGTTCATATTGTGTGACTCAAAAAGAAATCGACCCTAAAATGCTGACCT
GTAAGGTATTGCAACAGCTAATTTAGACTCGCAGCCAAGCTGCTCACGTC
ATTGTGAATTAACACCCCTGTGTTACAGACCACTTTAAACTTTGAGCGAT
CAAAATTTGTCCCTAGTAGGAAAAATATCCTataatttcagcaaaaaatt
gaccttgccccattcgaaattcaatgtaaaaaaattgcacttcaaaacca
tcccaactggatttttttgattgcttggaacgatagaatttctatcccca
ttgggctTTCGATAGAAATATTTATTTCCGTTTCCGCTGTGTAAGAAGAA
TTTCATCGAGCCTGTGAGACAGGAGGTGTAAATTAACTTACGCCTTAAAA
TCTGAGACTGCTCAAATATCATCACGCCTCGTTGACAAAGGGGGTGttag
atttttcattttcactcaTTACATCATGCATAGCCCTATCGATAATGGCC
CGTACTAATAGTTGTTGACCCTATGCTGCATCATACATATTGTATGATGG
CACTGATTTCAAAAGCGTGAACCGAAAGAGTATCGATGTCAGGGTTTCTT
TTTACACTTATGTTATAGGCTGTGTGGTGTTACGAAGATGGATGTAATTT
CAACATGAAACAAGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGAAA
TTGACCCATATGGGTGGTATAAGACCTGGACTTCTTCAGCGACAAATGCA
ACTGGCTTAAAACTTGATTTAACATTTTATCTGTGTTTGATTTCTGGgtt
attgatttttcttgagtGAAATGAAAACGACATGGATATCCCAGCCAAAA
TTTCGAGTCTAGATACCAGACGACGAATGATCATTTTGGAGCATCTTGTC
AAAGTTGGTTCCAAAAAAATTGGCAGTCTGCACATTTTGATACATTTCTG
CTTGAagggaaaaaaatataaagtaatacctcgttggaaagatattctta
ACCGGACTATTTTAAGtcttcaaaatcttttaaaaatttagaaaatggaa
atgaaaaatgaagatgaaaaaattaaagattttttctactggCACAAGAA
TTTTTCCGAAACttgaactttttcattttcgaaattttgaaagccttaaa
accaTCCACTTACGAATATCTTatcaacgaggtattacttgtAGTTATAT
CTTTTCTCCTTCTGCAGAAATGTATCAAAATGTGTAGACTGcaaattttt
ttggaacagacttaaaacagaagcagccaccgacctaaaatttgcaaata
tctgctctgatttgccagctggaaaaatttccccgaaattaagaacagtt
cctcgttttccaggggagaaatttttacttcagaacagttatatttttcc
agctaggaggtaagAAAACTTTCGGAACaggtacgaaattaccaggcgat
tgattttacgcgagttaactattcttatctaccagggctgacgaaatctt
ataagaacagatcgctaaattccagctcgacattgaaggacttttaagaa
cagaaaattaatttccagctaacagtttaaCTTTAAGTAT Coding sequence (CDS) from alignment at sc0000010:1144631..1148270+ >TCONS_00001407 ID=TCONS_00001407|Name=TCONS_00001407|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at sc0000010:1144631..1148270+ (Clytia hemisphaerica)
ATGGAGTAtaacaaaatttatttcatcCTTTTGGTGGTTTCAGCTACTAT
AAAAGATTCTCTATTAATCAAATGTTATGACTGTTCTGGAACTCACGCGT
ATTGTAACAACACAAGAAAAACAAAGACTTGTGATGGACCACAGTATTCC
TGTCTCCTACGATCTGGAAGCACCAAGATTCGAGTTTTAAAGAACGGTGC
TTtagattttgaagtttttagcACTGTAACAAAAACTTGTGCCGTGGAGA
GCAGTTCATATTGTGTGACTCAAAAAGAAATCGACCCTAAAATGCTGACC
TGTAAGGCTGTGTGGTGTTACGAAGATGGATGTAATTTCAACATGAAACA
AGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGAAATTGACCCATATG
GGTGGTATAAGACCTGGACTTCTTCAGCGACAAATGCAACTGGCTTAAAA
CTTGATTTAACATTTTATCTGTGTTTGATTTCTGGgttattgatttttct
tgagtGAATGGAGTAtaacaaaatttatttcatcCTTTTGGTGGTTTCAG
CTACTATAAAAGATTCTCTATTAATCAAATGTTATGACTGTTCTGGAACT
CACGCGTATTGTAACAACACAAGAAAAACAAAGACTTGTGATGGACCACA
GTATTCCTGTCTCCTACGATCTGGAAGCACCAAGATTCGAGTTTTAAAGA
ACGGTGCTTtagattttgaagtttttagcACTGTAACAAAAACTTGTGCC
GTGGAGAGCAGTTCATATTGTGTGACTCAAAAAGAAATCGACCCTAAAAT
GCTGACCTGTAAGGCTGTGTGGTGTTACGAAGATGGATGTAATTTCAACA
TGAAACAAGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGAAATTGAC
CCATATGGGTGGTATAAGACCTGGACTTCTTCAGCGACAAATGCAACTGG
CTTAAAACTTGATTTAACATTTTATCTGTGTTTGATTTCTGGgttattga
tttttcttgagtGAATGGAGTAtaacaaaatttatttcatcCTTTTGGTG
GTTTCAGCTACTATAAAAGATTCTCTATTAATCAAATGTTATGACTGTTC
TGGAACTCACGCGTATTGTAACAACACAAGAAAAACAAAGACTTGTGATG
GACCACAGTATTCCTGTCTCCTACGATCTGGAAGCACCAAGATTCGAGTT
TTAAAGAACGGTGCTTtagattttgaagtttttagcACTGTAACAAAAAC
TTGTGCCGTGGAGAGCAGTTCATATTGTGTGACTCAAAAAGAAATCGACC
CTAAAATGCTGACCTGTAAGGCTGTGTGGTGTTACGAAGATGGATGTAAT
TTCAACATGAAACAAGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGA
AATTGACCCATATGGGTGGTATAAGACCTGGACTTCTTCAGCGACAAATG
CAACTGGCTTAAAACTTGATTTAACATTTTATCTGTGTTTGATTTCTGGg
ttattgatttttcttgagtGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001407-exon-sc0000010-1491911889:1144631..1144944 | TCONS_00001407-exon-sc0000010-1491911889:1144631..1144944 | Clytia hemisphaerica | exon |
| TCONS_00001407-exon-sc0000010-1510915933:1144631..1144944 | TCONS_00001407-exon-sc0000010-1510915933:1144631..1144944 | Clytia hemisphaerica | exon |
| TCONS_00001407-exon-sc0000010-1575043694:1144631..1144944 | TCONS_00001407-exon-sc0000010-1575043694:1144631..1144944 | Clytia hemisphaerica | exon |
| TCONS_00001407-exon-sc0000010-1491911889:1146485..1146735 | TCONS_00001407-exon-sc0000010-1491911889:1146485..1146735 | Clytia hemisphaerica | exon |
| TCONS_00001407-exon-sc0000010-1510915933:1146485..1146735 | TCONS_00001407-exon-sc0000010-1510915933:1146485..1146735 | Clytia hemisphaerica | exon |
| TCONS_00001407-exon-sc0000010-1575043694:1146485..1146735 | TCONS_00001407-exon-sc0000010-1575043694:1146485..1146735 | Clytia hemisphaerica | exon |
| TCONS_00001407-exon-sc0000010-1491911889:1147299..1148270 | TCONS_00001407-exon-sc0000010-1491911889:1147299..1148270 | Clytia hemisphaerica | exon |
| TCONS_00001407-exon-sc0000010-1510915933:1147299..1148270 | TCONS_00001407-exon-sc0000010-1510915933:1147299..1148270 | Clytia hemisphaerica | exon |
| TCONS_00001407-exon-sc0000010-1575043694:1147299..1148270 | TCONS_00001407-exon-sc0000010-1575043694:1147299..1148270 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:1144631..1148270 + |
Blast
The following BLAST results are available for this feature:
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