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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001408 ID=TCONS_00001408|Name=TCONS_00001408|organism=Clytia hemisphaerica|type=transcript|length=1459bp
taatcATCATGAAAATATGTCGTTTTGAGAGAGAAGATGAATGTTGAACG
TTAAAGAGCATCAGCTAAACTGACCACAATTGAAGTTGGAaaaaatactg
caggaaaaacTCTTCTTGAAATAACAATGAATAGAAttcttttcttcttg
ttttttNCACTGACCACGACTTAAACAAGCTCGAGAATGGAGTAtaacaa
aatttatttcatcCTTTTGGTGGTTTCAGCTACTATAAAAGATTCTCTAT
TAATCAAATGTTATGACTGTTCTGGAACTCACGCGTATTGTAACAACACA
AGAAAAACAAAGACTTGTGATGGACCACAGTATTCCTGTCTCCTACGATC
TGGAAGCACCAAGATTCGAGTTTTAAAGAACGGTGCTTtagattttgaag
tttttagcACTGTAACAAAAACTTGTGCCGTGGAGAGCAGTTCATATTGT
GTGACTCAAAAAGAAATCGACCCTAAAATGCTGACCTGCTGTGTGGTGTT
ACGAAGATGGATGTAATTTCAACATGAAACAAGCTAACAGAGCTGGCCAA
ACGAGTCAAGCAAATGAAATTGACCCATATGGGTGGTATAAGACCTGGAC
TTCTTCAGCGACAAATGCAACTGGCTTAAAACTTGATTTAACATTTTATC
TGTGTTTGATTTCTGGgttattgatttttcttgagtGAAATGAAAACGAC
ATGGATATCCCAGCCAAAATTTCGAGTCTAGATACCAGACGACGAATGAT
CATTTTGGAGCATCTTGTCAAAGTTGGTTCCAAAAAAATTGGCAGTCTGC
ACATTTTGATACATTTCTGCTTGAagggaaaaaaatataaagtaatacct
cgttggaaagatattcttaACCGGACTATTTTAAGtcttcaaaatctttt
aaaaatttagaaaatggaaatgaaaaatgaagatgaaaaaattaaagatt
ttttctactggCACAAGAATTTTTCCGAAACttgaactttttcattttcg
aaattttgaaagccttaaaaccaTCCACTTACGAATATCTTatcaacgag
gtattacttgtAGTTATATCTTTTCTCCTTCTGCAGAAATGTATCAAAAT
GTGTAGACTGcaaatttttttggaacagacttaaaacagaagcagccacc
gacctaaaatttgcaaatatctgctctgatttgccagctggaaaaatttc
cccgaaattaagaacagttcctcgttttccaggggagaaatttttacttc
agaacagttatatttttccagctaggaggtaagAAAACTTTCGGAACagg
tacgaaattaccaggcgattgattttacgcgagttaactattcttatcta
ccagggctgacgaaatcttataagaacagatcgctaaattccagctcgac
attgaaggacttttaagaacagaaaattaatttccagctaacagtttaaC
TTTAAGTAT Run BLAST on NCBI transcript from alignment at sc0000010:1144704..1148270+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001408 ID=TCONS_00001408|Name=TCONS_00001408|organism=Clytia hemisphaerica|type=transcript|length=3567bp|location=Sequence derived from alignment at sc0000010:1144704..1148270+ (Clytia hemisphaerica)
taatcATCATGAAAATATGTCGTTTTGAGAGAGAAGATGAATGTTGAACG
TTAAAGAGCATCAGCTAAACTGACCACAATTGAAGTTGGAaaaaatactg
caggaaaaacTCTTCTTGAAATAACAATGAATAGAAttcttttcttcttg
ttttttNCACTGACCACGACTTAAACAAGCTCGAGAATGGAGTAtaacaa
aatttatttcatcCTTTTGGTGGTTTCAGCTACTATAAAAGGTTTGTGAA
TACTTTCAAACGCAGTAGTTACGTTTTGAATAGGATAAGAAATTAGATTT
GTTTATCCTCTAGGGAAAACGTTTTTATCCCGGAGGGGGAGGGCGAGATg
atgggtatgtccgagccaaagttaCTGGTGATGGAGTTTTGGACCCTTAC
AGCGACTCAATTTGCtctttaatggtttttgtacccctttttgagcgtgt
gaaaaagggacccttatggctcatATTTgaggatttgaaatttttttata
tttagtaTTATGGTTAATTCTGTATTCATGAAATATAGCCTCACCATTTC
GGTTCCTATAGGTATCTTAACATTGTGTAAAAATTGGTTCAGTGGACTAA
GAGAGCTCTTATAATTTCATATGTCAGCATAGTCTAGTCTTTTCAAAAAG
AGCTGAAAATACAGTGCTTTTAGCGACCAAAGtggtgaaaattaaaattt
ttcccctatcggcgcaaaccatggttgcgcctccttaatCTCTGATAACA
CTTTAAATGCAACTCAAATTACTATTACGATATCGAGATATTGTATATgc
aaagaaaaacttcaattttaaaattcaatatGATTCAGGCAGAATCATTC
CGAAAAAGAGCCATGCTTGAAGGAAATCAGTGgtccaaaatcaattttct
cctgtcggcgcaaaccatggttgcgcctccttcgTCACTAAATTATTTTC
CCCTGCACGTTTGAAATCAAGCTACTTGTTGCCTTTTATATAATAATGTA
GTCCTCCCCACATGAGTGCACAACATTTTGATATTGAGGCTTATAGGATC
ACTCACAATATAGAAAGTTACTGTAGTTAAACCCGATTTCTATATGTGAC
AAGTCACCATTCAAGTATAAGTAAGTATAACCCTCACCTTAATCAATCAA
TTAGAGtgtagggaaaaaattttagcaaggggggggggggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACCACTCCCT
GAGATCCTAAGAACTGGCTCTCTTATAAAAGTGAATTCctcttttttttc
aacatttgaagtttttcgaattttttatttcGGGATGAAAATTTTCTAGC
AGGCTTCAAACTATACACATCTACATTTTAGATTCTCTATTAATCAAATG
TTATGACTGTTCTGGAACTCACGCGTATTGTAACAACACAAGAAAAACAA
AGACTTGTGATGGACCACAGTATTCCTGTCTCCTACGATCTGGAAGCACC
AAGATTCGAGTTTTAAAGAACGGTGCTTtagattttgaagtttttagcAC
TGTAACAAAAACTTGTGCCGTGGAGAGCAGTTCATATTGTGTGACTCAAA
AAGAAATCGACCCTAAAATGCTGACCTGTAAGGTATTGCAACAGCTAATT
TAGACTCGCAGCCAAGCTGCTCACGTCATTGTGAATTAACACCCCTGTGT
TACAGACCACTTTAAACTTTGAGCGATCAAAATTTGTCCCTAGTAGGAAA
AATATCCTataatttcagcaaaaaattgaccttgccccattcgaaattca
atgtaaaaaaattgcacttcaaaaccatcccaactggatttttttgattg
cttggaacgatagaatttctatccccattgggctTTCGATAGAAATATTT
ATTTCCGTTTCCGCTGTGTAAGAAGAATTTCATCGAGCCTGTGAGACAGG
AGGTGTAAATTAACTTACGCCTTAAAATCTGAGACTGCTCAAATATCATC
ACGCCTCGTTGACAAAGGGGGTGttagatttttcattttcactcaTTACA
TCATGCATAGCCCTATCGATAATGGCCCGTACTAATAGTTGTTGACCCTA
TGCTGCATCATACATATTGTATGATGGCACTGATTTCAAAAGCGTGAACC
GAAAGAGTATCGATGTCAGGGTTTCTTTTTACACTTATGTTATAGGCTGT
GTGGTGTTACGAAGATGGATGTAATTTCAACATGAAACAAGCTAACAGAG
CTGGCCAAACGAGTCAAGCAAATGAAATTGACCCATATGGGTGGTATAAG
ACCTGGACTTCTTCAGCGACAAATGCAACTGGCTTAAAACTTGATTTAAC
ATTTTATCTGTGTTTGATTTCTGGgttattgatttttcttgagtGAAATG
AAAACGACATGGATATCCCAGCCAAAATTTCGAGTCTAGATACCAGACGA
CGAATGATCATTTTGGAGCATCTTGTCAAAGTTGGTTCCAAAAAAATTGG
CAGTCTGCACATTTTGATACATTTCTGCTTGAagggaaaaaaatataaag
taatacctcgttggaaagatattcttaACCGGACTATTTTAAGtcttcaa
aatcttttaaaaatttagaaaatggaaatgaaaaatgaagatgaaaaaat
taaagattttttctactggCACAAGAATTTTTCCGAAACttgaacttttt
cattttcgaaattttgaaagccttaaaaccaTCCACTTACGAATATCTTa
tcaacgaggtattacttgtAGTTATATCTTTTCTCCTTCTGCAGAAATGT
ATCAAAATGTGTAGACTGcaaatttttttggaacagacttaaaacagaag
cagccaccgacctaaaatttgcaaatatctgctctgatttgccagctgga
aaaatttccccgaaattaagaacagttcctcgttttccaggggagaaatt
tttacttcagaacagttatatttttccagctaggaggtaagAAAACTTTC
GGAACaggtacgaaattaccaggcgattgattttacgcgagttaactatt
cttatctaccagggctgacgaaatcttataagaacagatcgctaaattcc
agctcgacattgaaggacttttaagaacagaaaattaatttccagctaac
agtttaaCTTTAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001408-exon-sc0000010-1491911889:1144704..1144944 | TCONS_00001408-exon-sc0000010-1491911889:1144704..1144944 | Clytia hemisphaerica | exon |
| TCONS_00001408-exon-sc0000010-1510915933:1144704..1144944 | TCONS_00001408-exon-sc0000010-1510915933:1144704..1144944 | Clytia hemisphaerica | exon |
| TCONS_00001408-exon-sc0000010-1575043694:1144704..1144944 | TCONS_00001408-exon-sc0000010-1575043694:1144704..1144944 | Clytia hemisphaerica | exon |
| TCONS_00001408-exon-sc0000010-1491911889:1146485..1146730 | TCONS_00001408-exon-sc0000010-1491911889:1146485..1146730 | Clytia hemisphaerica | exon |
| TCONS_00001408-exon-sc0000010-1510915933:1146485..1146730 | TCONS_00001408-exon-sc0000010-1510915933:1146485..1146730 | Clytia hemisphaerica | exon |
| TCONS_00001408-exon-sc0000010-1575043694:1146485..1146730 | TCONS_00001408-exon-sc0000010-1575043694:1146485..1146730 | Clytia hemisphaerica | exon |
| TCONS_00001408-exon-sc0000010-1491911889:1147299..1148270 | TCONS_00001408-exon-sc0000010-1491911889:1147299..1148270 | Clytia hemisphaerica | exon |
| TCONS_00001408-exon-sc0000010-1510915933:1147299..1148270 | TCONS_00001408-exon-sc0000010-1510915933:1147299..1148270 | Clytia hemisphaerica | exon |
| TCONS_00001408-exon-sc0000010-1575043694:1147299..1148270 | TCONS_00001408-exon-sc0000010-1575043694:1147299..1148270 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:1144704..1148270 + |
Blast
The following BLAST results are available for this feature:
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