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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001493 ID=TCONS_00001493|Name=TCONS_00001493|organism=Clytia hemisphaerica|type=transcript|length=1900bp
AATCGATTCCGTGTCGATATCAACAACAATTATATCGATTTCTAGACAGG
GAAATTCTTAAGGGAATTCCAAAACGAACTTCCAAACACATTATATAAAG
CTGCTGGTTTTGGTGAATATTTCAAAACGCTTTTTGATGGATCAGAGAAG
ATTGGGATATCAGAAAATTGTGTTGTGGaaaaATCATGAGTCAAAAAGAG
AGAGACATTGCTGCTTTGGCGAAAACCATTTATGGAGAAGCAAGAGGGGA
AACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGTCAACCGATTCC
ATTCTAATAAGTCATGGTTGAAAGGAGACACAATCGAGGCAACATGTAAA
AAACCACAACAATATTCATGCTGGAATTCTAATGACATCAACGCAAGTAA
ACTCCAAAATGCCGGCGCCGAATTCTATCAAATTGCGAAAGAAGTTATTG
ATGGACATCACCATGACAATACAAGAGGGGCGTTACATTACCATGCTGAT
TACGCCAAGGCGGCACACCAATGGGCAGATAACAAAACACCGTGTGCGAC
TATCGGTGCCCATATGTTTTATAATAATATagattgatttgaaaaatctt
ttatttacactcctgtctcacagccccggtggaactttttcccacaatGG
GGATAAAAGTTTCTATCAaagtcccaatggggatagaaattctattgttc
tcgaGCTTAAAATATCCCAGaatatccagtggggatggttttggacagca
aatttttgcattgaatttcgaatggggatgaaatcaaagtcaatttccca
gtggggctgaaattgtagggtattttgtcCACCGGGGATAAAATTTTAGc
taaatttttcagtggggctatGGGGTCCCAGcgagtctgtgacacagggg
tctTTCATTCTTTCTTACAGTCAGTGTACTAATTTTGTCAAGATGGTACA
TTTGAGGGTGAGCTGCAAAAAGTCATACAGTATAAATTGAAATTGtgatc
gtaagaacatttatcAGAGGTCAAATCGAGGGTTCTTTCCTCATTGAATA
TCCAGATATTTCATTGTTGACTGAATGATACTTAACTATATTATCGGCCT
TTTATTTTTTACCAGACCAAAGAGATAATTGAGGTGACACGGAAAGAAAA
TTTAGGGCTGTATAAATTACTCTTGTTTGCCATTGCTATTTTCTTTACTG
TAGAATCTTTTGTGTAATTAGAtccgaaaaatattttccccgatCAGGGG
CACTATACGTTTTCctacttttattacaaaaacaTACATAATGGGGTGGC
TCAACTCTCAAATCTCTAACAGAGTgcatctcacgtttatcgtttgTAGT
ACataccagacgtaattaatcaaACAGTTCGTTCGATTACCAGAACTTAT
CAAACCTTGTCGAACTTATTAATCGGACAACAaatgacaaagttcgatta
aaaataccgttcgattggttcgattaattacaTCTGGTATATAGtgcggc
aatgaattttgagaTTCGTTCGATAAAgttctttgaatttttatgaTTAG
GTTTGTTAAACCtaaagaaattcttaaaatgTTACTCCTAAAgtgacttt
ttacaaaaatttctttgctctcgtggaaaaaatattttagtttttgaaaa
aaaatcttttttaattttttatgaataataTTGTTTTTTAACATGGAAAT
TGATTAACCAGATCAGCCTGCTAACTGAGCTGGCTCTATTTTCTAAGCAA
ATCAATTGACCAGTAGTTTTAAAactgggaaaaaaaattttcttcagtgG
ATTTCTTTTCTTTCGCGAGCGACAGTTCGATTTTGATCGAGGTTTCGATC
GTAAATCGATCGATTGACACattcctgtctcacagccccggtggtaCTTT Run BLAST on NCBI transcript from alignment at sc0000010:638305..643125- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001493 ID=TCONS_00001493|Name=TCONS_00001493|organism=Clytia hemisphaerica|type=transcript|length=4821bp|location=Sequence derived from alignment at sc0000010:638305..643125- (Clytia hemisphaerica)
AATCGATTCCGTGTCGATATCAACAACAATTATATCGATTTCTAGACAGG
GAAATTCTTAAGGGAATTCCAAAACGAACTTCCAAACACATTATATAAAG
CTGCTGGTTTTGGTGAATATTTCAAAACGCTTTTTGATGGATCAGAGAAG
ATTGGGATATCAGAAAATTGTGTTGTGGAAAAGTAAGTTTTTATTTCTCA
AAATATGCGAACATTATTGCCCTCTAGACGAGCTGACCCAAAATGCAACC
ACATTTGAGTAGCCTGAATATCCAGGCTGTAGAATTTTTTGATTTATCGC
TTTGAAAGCGCTTTGTATTTTAAAATTTCAAATTAGTAGCATTTTCCAAT
TTTTGGCTGGTTTGTAAAATACACGACACCGACCGAAGAGTAAAAATGTA
TGTCACGTGGATTTGCTTCACAAAATTTGACCAAAAAAGATGAATGCGAG
AAAAAGTTATATGGGCCTAAATACGAAGTCATATTTGGTGACAATTTGCA
AAATTTCATTATGAACATTTCAAAAGTTATGAAGATCGATGGAAAAGTGA
CGCATTGGGTTAAAGATAAGAAAAATTGCACAATATTCTTAATTATCTTC
TAAATTTCACGCAGTATTAATACTGGATACGTCTACAAACCCTTAGCGGG
CGGCGTACTCGTTAAAAACCCTCTTCCCCTTGCAAGGCGATCGCTGCCTT
AGGTGTTTATAACAGTAAACATAATTCTCATTAACAGATCATGAGTCAAA
AAGAGAGGGACATTGCTGCGTTGGCGAAAACCATTTATGGAGAAGCAAGA
GGGGAAACGCGAGAGGGACAGTACGCAGTTGCACATTCTGTTGTCAACCG
ATTCCATTCTAATAAGTCATGGTTGAAAGGTTGGTATATCTTATTTTATG
CGTGGTAATTAAACCAGTAGAATCTAATTGTCTTGAAATCTCGTTGAGAG
TAGAACAGCGATCTATCTTCATAATGTACAGTGCCGTAGGGAAGCATTTT
GATATTGGGGGGGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAATTTTCTCGGGGGCAGTTTTTCTAGAACCAGGTTCTGC
ATAGGCTAGTTCTGCATGGAATTATTTCACCCTAAATTTCAGAACATACA
AGGCAATTTGGAGGATTGATTGAAAAAATATATACTTTGAAATATATTTT
CCTGGCAAATCTTCAAAGCTTCATGAAATTCTTTTTCATTCTTCAAAGGA
ATTTCAGTACTTATCCTACCACGCCTTACTTAAGATTTAAGATCTCTTAT
TGAACCAAAGCCAAACAGATTTCAATAGATTTATTTTATCAAAACTAAGA
TTTTGCCCAGTTAGAGACCATGACTATAAATACTTATTTTAGACCACTTC
CTATAAAACAAAACAATCCCAAAGCTTATTATTATTATTATGGCGAGCTA
CTTAAATATTTTAAAATGTCGTTCAGGCAACCCCGTCTCTGTAACCCAAT
ATAGTCTTGCTTCGAAGGTTACAGCCTCTAGAAGGCAGCTCGTTTGAGTC
GAAAAACCTCCCTTTTTTCTCTATAAAGGTTAACCATTGGACCTAAAACT
TATGTACATCTGAAATCAGTAGGCTCTAAAGTACCTATGTATCGAGAATA
CAGTTTCTAGCACTAAATTCAGTTTTTTCTTCTTCATTTTTCGTCTTTGT
TTTATAAAATTTTTAGAATATAATTTTTTAAACGGTATACTATCTGTAAG
ATTTGAAGCATTCGTTTAAAAATGGTAAGCGAGACAAACAATAGTGCATA
CTTAAAGTCAATAGATTTGTTACCAAGTTACTTTGTTTATGAAGAAATCA
AATACAGCTTTATATTACAATGCTCTTGTTTCTGGGAATTCTAAAATGAT
CGAAAATGACAAACAAGAAAAAACATATTTTCAAGATTTTGACCATAAAA
GTACACGAGAAGAGAAAGTTAATCGATTCCGTGTCGATATCAACAACAAT
TATATCGATTTCTAGACAGGGAAATTCTTAAGGGAATTCCAAAACGAACT
TCCAAACACATTATATAAAGCTGCTGGTTTTGGTGAATATTTCAAAACGC
TTTTTGATGGATCAGAGAAGATTGGGAGAGAAAATTGTGTTGTGGAAAAG
TAAGTTTTTATTTCTCAAAATATGCGAACATATTGCCCTCTAGACGAGCT
GACCCAAAATGCAACCACTTTTGAGTAGCCTGAATATCCAGGCTGTAGAA
TTTTTTGGTTTATCGCCTTGAAAGCGCTTTGGATTTTAAAATTTCAAATC
AGTAGCATTTTCCAATTTTTGGCTGGTTTGTAAAATACACGACACCGACA
GAAGAGTAAAAATGTATGTCACGTGGATTTGCTTCACAAAATTTGACCAA
AAAAGATGAATGCGAGAAAAAGTTATATGGGCCTAGATACGAAGTCATAT
TTGGTGACAATTTGCAAATTATGAACATTTCAAAAGTTATGAAGATCGAT
GGAAAAGTGACGCATTTGGTTAAAGATAAGAAAAATTGCACAATATTCTT
AATTATCTTTTGAATTTCACGCAGTATTAATAGTGGATACGTCTACAAAC
CCTTAGCGGGCGGCGTACTCGTCAAAAACCCTCTTCCCCTTGCAAGGCGA
TCGCTGCCTTAGGTGTTTATAACAGTAAACATAATTCTCATTAACAGATC
ATGAGTCAAAAAGAGAGAGACATTGCTGCTTTGGCGAAAACCATTTATGG
AGAAGCAAGAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTG
TTGTCAACCGATTCCATTCTAATAAGTCATGGTTGAAAGGTTGGTATATC
TTATTTTATGTGTGGTAATTAAACCAGTAGAAATCTAAATGTCTTGAAAT
CTCGTTGAGAGTAGAACAGCGATCTATCTTCATAATGTACAGTGCCGTAG
GGAAGCATTTTGATATTGTAAATTTTGAAATCTAGAGCTCTAAATTGGCT
AAAAACATACTCAAAAAATAAATAAAAAAATAAATAATAAAATGATTCGA
ATAAAGGCAAATTTTAAAGGTAAAATACTCCATTTTATGAAAAATCACTC
TTATTTTTAATTACTGGGGAGGGGGGGGGGGCTAAGCCCCCCCTAGCCCC
CTAGCACTCTCTTTATACAAACACTAAGTAAATCTTTCAATTTAGGAGAC
ACAATCGAGGCAACATGTAAAAAACCACAACAATATTCATGCTGGAATTC
TAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCCGAATTCTATC
AAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAATACAAGAGGG
GCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACCAATGGGCAGA
TAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTTTATAATAATA
TAGATTGATTTGAAAAATCTTTTATTTACACTCCTGTCTCACAGCCCCGG
TGGAACTTTTTCCCACAATGGGGATAAAAGTTTCTATCAAAGTCCCAATG
GGGATAGAAATTCTATTGTTCTCGAGCTTAAAATATCCCAGAATATCCAG
TGGGGATGGTTTTGGACAGCAAATTTTTGCATTGAATTTCGAATGGGGAT
GAAATCAAAGTCAATTTCCCAGTGGGGCTGAAATTGTAGGGTATTTTGTC
CACCGGGGATAAAATTTTAGCTAAATTTTTCAGTGGGGCTATGGGGTCCC
AGCGAGTCTGTGACACAGGGGTCTTTCATTCTTTCTTACAGTCAGTGTAC
TAATTTTGTCAAGATGGTACATTTGAGGGTGAGCTGCAAAAAGTCATACA
GTATAAATTGAAATTGTGATCGTAAGAACATTTATCAGAGGTCAAATCGA
GGGTTCTTTCCTCATTGAATATCCAGATATTTCATTGTTGACTGAATGAT
ACTTAACTATATTATCGGCCTTTTATTTTTTACCAGACCAAAGAGATAAT
TGAGGTGACACGGAAAGAAAATTTAGGGCTGTATAAATTACTCTTGTTTG
CCATTGCTATTTTCTTTACTGTAGAATCTTTTGTGTAATTAGATCCGAAA
AATATTTTCCCCGATCAGGGGCACTATACGTTTTCCTACTTTTATTACAA
AAACATACATAATGGGGTGGCTCAACTCTCAAATCTCTAACAGAGTGCAT
CTCACGTTTATCGTTTGTAGTACATACCAGACGTAATTAATCAAACAGTT
CGTTCGATTACCAGAACTTATCAAACCTTGTCGAACTTATTAATCGGACA
ACAAATGACAAAGTTCGATTAAAAATACCGTTCGATTGGTTCGATTAATT
ACATCTGGTATATAGTGCGGCAATGAATTTTGAGATTCGTTCGATAAAGT
TCTTTGAATTTTTATGATTAGGTTTGTTAAACCTAAAGAAATTCTTAAAA
TGTTACTCCTAAAGTGACTTTTTACAAAAATTTCTTTGCTCTCGTGGAAA
AAATATTTTAGTTTTTGAAAAAAAATCTTTTTTAATTTTTTATGAATAAT
ATTGTTTTTTAACATGGAAATTGATTAACCAGATCAGCCTGCTAACTGAG
CTGGCTCTATTTTCTAAGCAAATCAATTGACCAGTAGTTTTAAAACTGGG
AAAAAAAATTTTCTTCAGTGGATTTCTTTTCTTTCGCGAGCGACAGTTCG
ATTTTGATCGAGGTTTCGATCGTAAATCGATCGATTGACACATTCCTGTC
TCACAGCCCCGGTGGTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001493-exon-sc0000010-1575043694:642944..643125 | TCONS_00001493-exon-sc0000010-1575043694:642944..643125 | Clytia hemisphaerica | exon |
| TCONS_00001493-exon-sc0000010-1575043694:640237..640378 | TCONS_00001493-exon-sc0000010-1575043694:640237..640378 | Clytia hemisphaerica | exon |
| TCONS_00001493-exon-sc0000010-1575043694:638305..639880 | TCONS_00001493-exon-sc0000010-1575043694:638305..639880 | Clytia hemisphaerica | exon |
| TCONS_00001493-exon-sc0000010-1510915933:642944..643125 | TCONS_00001493-exon-sc0000010-1510915933:642944..643125 | Clytia hemisphaerica | exon |
| TCONS_00001493-exon-sc0000010-1510915933:640237..640378 | TCONS_00001493-exon-sc0000010-1510915933:640237..640378 | Clytia hemisphaerica | exon |
| TCONS_00001493-exon-sc0000010-1510915933:638305..639880 | TCONS_00001493-exon-sc0000010-1510915933:638305..639880 | Clytia hemisphaerica | exon |
| TCONS_00001493-exon-sc0000010-1491911889:642944..643125 | TCONS_00001493-exon-sc0000010-1491911889:642944..643125 | Clytia hemisphaerica | exon |
| TCONS_00001493-exon-sc0000010-1491911889:640237..640378 | TCONS_00001493-exon-sc0000010-1491911889:640237..640378 | Clytia hemisphaerica | exon |
| TCONS_00001493-exon-sc0000010-1491911889:638305..639880 | TCONS_00001493-exon-sc0000010-1491911889:638305..639880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:638305..643125 - |
Blast
The following BLAST results are available for this feature:
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