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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001497 ID=TCONS_00001497|Name=TCONS_00001497|organism=Clytia hemisphaerica|type=transcript|length=1276bp TAAAGAAATGTGGTTCTTGTTGATGATCTTACTGAGATATGgAATTTGTG CAAGAATTTTTCCAACTCAAACTTCAATATCAACGAATGAAAACAGCAAC ATTACATTAGAATGGTCTTTGGAACCAATGCATGGAGAAATTGCAGACTG GATATCCATTTTCCATCAATCTGATGAAGATTCTCTCATTCGACCGTTAT GGCACGATTCTACTGGTTTGAcaaaatttggggaaaagaaatttcaagat tccttttcagtgatttacgccaagaatttgaagaaagtttcagcaacaat aacaaacataaaagactCAATGATTGTTTATTTGACGGCTGTTTTCATGG ATAAAAACGGGCAAATTGTCAGTGGACCTATTTATTCCAAGTTTAAAATT CGAGttGGTTACATTCAATTGACAGACAAACCAATTTGTTATGGAGCACG AGACAAAACACCAGCTTCCTTTTCACTTACTCTTGATGGTACTCTCAAAG CAATTAAGTTACGACATATCTCTGGCAGTGTACATTGTAGTggaaaatca ataaacttttgggGTTGCAGTCCTACAGATGCAAGTTACATTATGACAAT AATCACCAACAAATTAAACAAACCAATCGCTCCAATAGGTTTGCTGTCGA CAAATTCATATCCAAGTAATCTGATCCCAAATTATGGAGGACCTATTGCT TCAGAAATAGTCATACCAATGGCAGGTGGACAAAAAAAGGTTCTGAAAGA TGAGCAAATGGAAATTTGGTATATTGAGGATTTGATGGATATTGCAACGA GTGACAACAGTGGCAATCATTGTGTTCATGTTTATGCATTGTATTCGTAA TCTTCTTAAAAGTGAATCTCCAACTGGAACCCAGTCCAATagttcgtttt ttttaattctgataGCGTTCACGATTttatcacgtccatcagtaaaatcg tAAATCATGTATTGGTGATATGGCGTGAGTCAGCGTGAGTGTTAAGCTAC CCTAATTGAAAACATTAGCAAAAAATCACTGGCAGAGAACAATTACCCCA AAATTCATCGGGGCAGGGACAAAACTTTTCCAATTCATCCTTAAATCAAG CATTTACTTTAACATTGATTGGATTGGCTGGATTGACTTTCCTTGAATTC ATGCTTTAAACTTTTATCTTTTGTtctatttttggcatttttttggCGTT TGCCCAAGTTCtttttacattttgaaattaaaagctAAAAAAGAAGAGTA CAGACGAAAACTTTGGATACAATTAT Run BLAST on NCBI protein sequence of TCONS_00001497-protein >TCONS_00001497-protein ID=TCONS_00001497-protein|Name=TCONS_00001497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
KEMWFLLMILLRYGICARIFPTQTSISTNENSNITLEWSLEPMHGEIADW ISIFHQSDEDSLIRPLWHDSTGLTKFGEKKFQDSFSVIYAKNLKKVSATI TNIKDSMIVYLTAVFMDKNGQIVSGPIYSKFKIRVGYIQLTDKPICYGAR DKTPASFSLTLDGTLKAIKLRHISGSVHCSGKSINFWGCSPTDASYIMTI ITNKLNKPIAPIGLLSTNSYPSNLIPNYGGPIASEIVIPMAGGQKKVLKD EQMEIWYIEDLMDIATSDNSGNHCVHVYALYS Run BLAST on NCBI transcript from alignment at sc0000010:725769..730809- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001497 ID=TCONS_00001497|Name=TCONS_00001497|organism=Clytia hemisphaerica|type=transcript|length=5041bp|location=Sequence derived from alignment at sc0000010:725769..730809- (Clytia hemisphaerica) TAAAGAAATGTGGTTCTTGTTGATGATCTTACTGAGATATGGTAAGCAAA
AAATACTTTTTTTTACAAACTTTGGATAGAAATAATGAGTTTCGTTATTC
CGGGGCGGGGTTACGTTTGCGAGCTAACGGGGGTGCCGACCGACTTTCGA
GCCTTGGACCCTTACTGGGACAAAAAAGGAGAAAACAAAGGAAAATTTTG
TGAATCATACGACCCTTTGTGGAACTTTGGAGATACAAATAAGATACCCT
TAAGGGCGGCACATTCTGTACCCTCCATCTTCCTAAGTACGGGGAGGGGG
TACTTAGGCTCCAAGGCTCATCATCGAGTAGCATAGAATCTTGGGTAATT
TTGGGACAGATAATTATAAGCGATGATGTAAAAACGATCATTTAGGAATC
ATCTTGAAGTACAATATTGACCTTAGTTAGTTATATCCCCGAGAGAGGCG
AATGGGGTATGAGAACGTATCTCTGGTCAGGGTGCTTGTTTTAGGCGAGG
GGTAAATCACTAAAAATTAGGTGTACGAGATTTTGATTTCTTTTTGATTT
TTGATTTCTTTTTGATTTCCTTTTGATTTCTGATTTCTTTTTGATTTCTT
TTTGATTTCTGATTTCTTTTTGATTTCAATGCGTGTATACTTCCGTCCAT
TCGATTTTTCACAATAAAAATGAAATGAAAATTGATTTTTTTTCAATTAT
TTTCAATTTTTTATTTTTGTTTTTAAATTAAAAATTGAAAAAAGAAAAAT
TGAGATTCAATTTTCAATTTTTAATTTTTTGTCCATGTGGGTGACATTTC
TGTCATGATGATGTATCATTTAGATTAGACGGGGGTCTGAAATGACAATG
TTTGTTGCTTGCGCTTAGGCATCCTTTGTATAATATCTCTATCACGTAAA
ACATTTTACACTGTTTTTTAATATTGTTTCCTTATCTCATCAAATAATAG
TGATTATGTAACATCATAAGTATATACTACCTTTTAAAATTATATCATAA
TTGGCTTTAAACGTAGCTTCTGCAGATGGGCTCAACCTAAGTATTGTCCG
AGATCCGTAAATCGCAATAGGTATACTTACGCAATATAACATGCAACAGA
ACAGAATTGATGGAGTGATTCTGCAAGACAACTGCCACGCTGGAGTAATC
GTCTATTTGAAGGTCCTGAAGATGCTGTAACAGGGCTGGGTGGTTCAGAA
AGTTTACAAAGATTTCACCAAATCATGGAGGAGAATAATCGCGACAGCTA
CAATTTGCTGTAAATCTTTAGAACTACTAAACCTAAAAAACCTACAAAAA
CCTTCCGTAGAATGACCATAAACACCTCCTTTCTATAATCCCCACACCGA
TCCGATCCGGCTGGAGATTCAAAGTAACAGATCTTACTGCTAATTTGCCA
AAAGCTTCGGTCTTGCATATCATTCCAGTTTGTCAATAAGATCTTATATC
ATTAGATCATTAGATGTTACATTATGTTTTTTCTGATCGTGTAATATGTT
AATAATGTGATAAAGATGTTATAGGACAATATATATAACATCTACAGCAG
TCTGCGACAAATCTATCAGCCTAGCTTCATTCTTGCTATGTTCAGACCCC
CGTCGACCCTAAATGATACATCATCATGACAGAAATGTCACCCACATGGA
CAAAAAAATAAAAATTGAAAATTGAATCTCAATTTTTCTTTTTTCAATTT
TTAATTTAAAAACAAAAATGAAAAATTGAAAATAATTGAAAAAAATCAAT
TTTCATTTCATTTTTATTGTGAAAAATCGAATGGACGGAAGTATACACGC
ATTGGATTTCTTTTTGATTTTTGATTTTTTTTTTTGATTTTGATTTTGAT
TTCTTTTTGATTTCTGATTTCTTTTTGATTTCTTTTTGATTTTTGATTTC
TTTTTGATTTCTTTTTGATTTCTTTTTGATTTTTGATTTTTTTTTTATTT
CTTTTTGATTTTTGATTTCTTTTTGATTTTTGATTTCTTTTTGATTTCTT
TTTGATTTTTGATTTCTTTTTGATTTCTTTTTGATTTGTGATTTCTTTTT
GATTTCTTTTTGATTTTTCAAAAAGGTGTACGTGATTTTTTTCAGTGATT
TACCCCTCGGTTTTAGGCCCCGAAGATATTTATTCTCTCGTCACTTTTAG
TCATTTTTACAAATTTACGAAACATTTATATCTGACAAGGTCCCTATTTC
AAACTCTACCAGTGGGCCTGTACCCGTCGCCGTCAAGGTCAGTGCATCCC
ACCCGGATCACAACACCGCTGAGGCCCGCGGTAAAAAAAACCAGCAAAAT
AAATGTAAATAAAGAGTAGAAAATGCACATCTCCGTTGAAAATTGTAAGC
CTAAGTTTAATCCCCTTCTAATTCTATAATATAATGACTCCTCCGCTCTA
GATATTCGGGGTTACAATAAAAATATTGTCACGCTGAAATGTTTATCCAT
CGGTGTCTCAATTGCTATTTTCCTTCTTTGAAAAATTCCCAAGGAAATTT
CGAATCAAAGAAAAAGTTTTATCCCCCTGTGAAATTCCAAAATTTATCAG
TTCATCGAGACAGGGGTGTTAAGTTTATACACCTTTTCGACCGTAGCCAC
CAATTGCCACGCGGGCATTTTTTTCCGCTTTATCCCACTAAAACCGTCCC
AGTCCTTTTTTCGCACCTATAGACAATAGAAAAATGCGTCAAGAAAGGAT
TGGGACGTTTTAGTGGGATAAAGCGGACAAAAAAACGCCCGCGCAACTAC
GGTCGAAAAGGTGTATTTCATCGTTGTAGTGTTGAAATATACATTTCACT
GGTGATTGGTGCTGAGCACCATGAAACTCTGAGTTTGAAACATACTCTCG
GATACCTAATAGCCGGGGGGCCCGCTAAATGATTTTTCGAAAATTTTCCA
CCCAGGACATTCTTATTCCGACCCCCTCCCGCTTATTGATGTTTGGGAAA
TCTTTTTTGAAAGTTCCCTCTTTTGGCCTAATAAGATAAATTTTATCCCA
ACCCCCTCCACTTATTAATTTTTGAGATTTTTTTCCAAATCCCCCGCTTA
TTCCAAACAAAATTGTGTCAATTCTTTATTAGAGTTTATTTTATCAAATT
AAGCTTAAATTTTTGGAAAATGGGCCCTCTGCTGGATGAACACTGCTAAT
TTTGATCTTCTACCCGGAGTTGGAGGGAGGGGGTAGTTAAACAAATGTAG
GGTTCGGCTCTGTGCCGCCCTGAAGCCTTTTTTGGACCATAAAAGTCCCT
CTAGGGGTGGTAAATACCACTAATACATATTAGGAAAAAAAGTCCCAGTA
AGGGACCGAAAATTAACAAAATTTCGGTTTTTTCGTTGATTTTAGAATTC
CGATTTTTTTAAATCGGACGGCACCTTCCGTCATTTCGCAAACCTAGCAC
CCGCCGGGATTTTCTGTAATCCATTTCAACTTTAACATTTCAACTTTTTT
GATTTTCTAGGAATTTGTGCAAGAATTTTTCCAACTCAAACTTCAATATC
AACGAATGAAAACAGCAACATTACATTAGAATGGTCTTTGGAACCAATGC
ATGGAGAAATTGCAGACTGGATATCCATTTTCCATCAATCTGATGAAGAT
TCTCTCATTCGACCGTTATGGCACGATTCTACTGGTTTGACAAAATTTGG
GGAAAAGAAATTTCAAGATTCCTTTTCAGTGATTTACGCCAAGAATTTGA
AGAAAGTTTCAGCAACAATAACAAACATAAAAGACTCAANAATTACGCCA
AGAATTTGAAGAAAGTTTCCGCAATAATAACAAACATAAAAGACTCAATG
ATTGTTTATTTGACGGCTGTTTTCATGGATAAAAACGGGCAAATTGTCAG
TGGACCTATTTATTCCAAGTTTAAAATTCGAGGTAATTCTAAATTCGATA
TTTAATCAATTGAGCTCAGAATCCTTATTCGTGATATGCACCATTGCACG
GACCCAACAGCTGATTGGTTGTAAGTGACGTAAAGTCAGTCAAGAGTCCC
CTCAAGACGGCCCTGCAAACCAATCGGCTGTTTGGTACGTGATGTAATGT
CGGAAGACATCGCAATGGTACATGGTGACATGAATTATTTGTCCCTTTTC
TTTCATTTGTTTTTCTTCTCACTTAGATTATCATAAGTTAATTTGTTGTG
TTTATTTTCATTTTCATAGTTGGTTACATTCAATTGACAGACAAACCAAT
TTGTTATGGAGCACGAGACAAAACACCAGCTTCCTTTTCACTTACTCTTG
ATGGTACTCTCAAAGCAATTAAGTTACGACATATCTCTGGCAGTGTACAT
TGTAGTGGAAAATCAATAAACTTTTGGGGTTGCAGTCCTACAGATGCAAG
TTACATTATGACAATAATCACCAACAAATTAAACAAACCAATCGCTCCAA
TAGGTTTGCTGTCGACAAATTCATATCCAAGTAATCTGATCCCAAATTAT
GGAGGACCTATTGCTTCAGAAATAGTCATACCAATGGCAGGTGGACAAAA
AAAGGTTCTGAAAGATGAGCAAATGGAAATTTGGTATATTGAGGATTTGA
TGGATATTGCAACGAGTGACAACAGTGGCAATCATTGTGTTCATGTTTAT
GCATTGTATTCGTAATCTTCTTAAAAGTGAATCTCCAACTGGAACCCAGT
CCAATAGTTCGTTTTTTTTAATTCTGATAGCGTTCACGATTTTATCACGT
CCATCAGTAAAATCGTAAATCATGTATTGGTGATATGGCGTGAGTCAGCG
TGAGTGTTAAGCTACCCTAATTGAAAACATTAGCAAAAAATCACTGGCAG
AGAACAATTACCCCAAAATTCATCGGGGCAGGGACAAAACTTTTCCAATT
CATCCTTAAATCAAGCATTTACTTTAACATTGATTGGATTGGCTGGATTG
ACTTTCCTTGAATTCATGCTTTAAACTTTTATCTTTTGTTCTATTTTTGG
CATTTTTTTGGCGTTTGCCCAAGTTCTTTTTACATTTTGAAATTAAAAGC
TAAAAAAGAAGAGTACAGACGAAAACTTTGGATACAATTAT Coding sequence (CDS) from alignment at sc0000010:725769..730809- >TCONS_00001497 ID=TCONS_00001497|Name=TCONS_00001497|organism=Clytia hemisphaerica|type=CDS|length=3396bp|location=Sequence derived from alignment at sc0000010:725769..730809- (Clytia hemisphaerica) TTGGTTACATTCAATTGACAGACAAACCAATTTGTTATGGAGCACGAGAC AAAACACCAGCTTCCTTTTCACTTACTCTTGATGGTACTCTCAAAGCAAT TAAGTTACGACATATCTCTGGCAGTGTACATTGTAGTGGAAAATCAATAA ACTTTTGGGGTTGCAGTCCTACAGATGCAAGTTACATTATGACAATAATC ACCAACAAATTAAACAAACCAATCGCTCCAATAGGTTTGCTGTCGACAAA TTCATATCCAAGTAATCTGATCCCAAATTATGGAGGACCTATTGCTTCAG AAATAGTCATACCAATGGCAGGTGGACAAAAAAAGGTTCTGAAAGATGAG CAAATGGAAATTTGGTATATTGAGGATTTGATGGATATTGCAACGAGTGA CAACAGTGGCAATCATTGTGTTCATGTTTATGCATTGTATTCGTAAATAA AAGACTCAATGATTGTTTATTTGACGGCTGTTTTCATGGATAAAAACGGG CAAATTGTCAGTGGACCTATTTATTCCAAGTTTAAAATTCGAGGAATTTG TGCAAGAATTTTTCCAACTCAAACTTCAATATCAACGAATGAAAACAGCA ACATTACATTAGAATGGTCTTTGGAACCAATGCATGGAGAAATTGCAGAC TGGATATCCATTTTCCATCAATCTGATGAAGATTCTCTCATTCGACCGTT ATGGCACGATTCTACTGGTTTGACAAAATTTGGGGAAAAGAAATTTCAAG ATTCCTTTTCAGTGATTTACGCCAAGAATTTGAAGAAAGTTTCAGCAACA ATAACAAACAAAGAAATGTGGTTCTTGTTGATGATCTTACTGAGATATGT TGGTTACATTCAATTGACAGACAAACCAATTTGTTATGGAGCACGAGACA AAACACCAGCTTCCTTTTCACTTACTCTTGATGGTACTCTCAAAGCAATT AAGTTACGACATATCTCTGGCAGTGTACATTGTAGTGGAAAATCAATAAA CTTTTGGGGTTGCAGTCCTACAGATGCAAGTTACATTATGACAATAATCA CCAACAAATTAAACAAACCAATCGCTCCAATAGGTTTGCTGTCGACAAAT TCATATCCAAGTAATCTGATCCCAAATTATGGAGGACCTATTGCTTCAGA AATAGTCATACCAATGGCAGGTGGACAAAAAAAGGTTCTGAAAGATGAGC AAATGGAAATTTGGTATATTGAGGATTTGATGGATATTGCAACGAGTGAC AACAGTGGCAATCATTGTGTTCATGTTTATGCATTGTATTCGTAAATAAA AGACTCAATGATTGTTTATTTGACGGCTGTTTTCATGGATAAAAACGGGC AAATTGTCAGTGGACCTATTTATTCCAAGTTTAAAATTCGAGGAATTTGT GCAAGAATTTTTCCAACTCAAACTTCAATATCAACGAATGAAAACAGCAA CATTACATTAGAATGGTCTTTGGAACCAATGCATGGAGAAATTGCAGACT GGATATCCATTTTCCATCAATCTGATGAAGATTCTCTCATTCGACCGTTA TGGCACGATTCTACTGGTTTGACAAAATTTGGGGAAAAGAAATTTCAAGA TTCCTTTTCAGTGATTTACGCCAAGAATTTGAAGAAAGTTTCAGCAACAA TAACAAACAAAGAAATGTGGTTCTTGTTGATGATCTTACTGAGATATGTT GGTTACATTCAATTGACAGACAAACCAATTTGTTATGGAGCACGAGACAA AACACCAGCTTCCTTTTCACTTACTCTTGATGGTACTCTCAAAGCAATTA AGTTACGACATATCTCTGGCAGTGTACATTGTAGTGGAAAATCAATAAAC TTTTGGGGTTGCAGTCCTACAGATGCAAGTTACATTATGACAATAATCAC CAACAAATTAAACAAACCAATCGCTCCAATAGGTTTGCTGTCGACAAATT CATATCCAAGTAATCTGATCCCAAATTATGGAGGACCTATTGCTTCAGAA ATAGTCATACCAATGGCAGGTGGACAAAAAAAGGTTCTGAAAGATGAGCA AATGGAAATTTGGTATATTGAGGATTTGATGGATATTGCAACGAGTGACA ACAGTGGCAATCATTGTGTTCATGTTTATGCATTGTATTCGTAAATAAAA GACTCAATGATTGTTTATTTGACGGCTGTTTTCATGGATAAAAACGGGCA AATTGTCAGTGGACCTATTTATTCCAAGTTTAAAATTCGAGGAATTTGTG CAAGAATTTTTCCAACTCAAACTTCAATATCAACGAATGAAAACAGCAAC ATTACATTAGAATGGTCTTTGGAACCAATGCATGGAGAAATTGCAGACTG GATATCCATTTTCCATCAATCTGATGAAGATTCTCTCATTCGACCGTTAT GGCACGATTCTACTGGTTTGACAAAATTTGGGGAAAAGAAATTTCAAGAT TCCTTTTCAGTGATTTACGCCAAGAATTTGAAGAAAGTTTCAGCAACAAT AACAAACAAAGAAATGTGGTTCTTGTTGATGATCTTACTGAGATATGTTG GTTACATTCAATTGACAGACAAACCAATTTGTTATGGAGCACGAGACAAA ACACCAGCTTCCTTTTCACTTACTCTTGATGGTACTCTCAAAGCAATTAA GTTACGACATATCTCTGGCAGTGTACATTGTAGTGGAAAATCAATAAACT TTTGGGGTTGCAGTCCTACAGATGCAAGTTACATTATGACAATAATCACC AACAAATTAAACAAACCAATCGCTCCAATAGGTTTGCTGTCGACAAATTC ATATCCAAGTAATCTGATCCCAAATTATGGAGGACCTATTGCTTCAGAAA TAGTCATACCAATGGCAGGTGGACAAAAAAAGGTTCTGAAAGATGAGCAA ATGGAAATTTGGTATATTGAGGATTTGATGGATATTGCAACGAGTGACAA CAGTGGCAATCATTGTGTTCATGTTTATGCATTGTATTCGTAAATAAAAG ACTCAATGATTGTTTATTTGACGGCTGTTTTCATGGATAAAAACGGGCAA ATTGTCAGTGGACCTATTTATTCCAAGTTTAAAATTCGAGGAATTTGTGC AAGAATTTTTCCAACTCAAACTTCAATATCAACGAATGAAAACAGCAACA TTACATTAGAATGGTCTTTGGAACCAATGCATGGAGAAATTGCAGACTGG ATATCCATTTTCCATCAATCTGATGAAGATTCTCTCATTCGACCGTTATG GCACGATTCTACTGGTTTGACAAAATTTGGGGAAAAGAAATTTCAAGATT CCTTTTCAGTGATTTACGCCAAGAATTTGAAGAAAGTTTCAGCAACAATA ACAAACAAAGAAATGTGGTTCTTGTTGATGATCTTACTGAGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001497-exon-sc0000010-1575043694:730769..730809 | TCONS_00001497-exon-sc0000010-1575043694:730769..730809 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1575043694:727084..727349 | TCONS_00001497-exon-sc0000010-1575043694:727084..727349 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1575043694:726928..727024 | TCONS_00001497-exon-sc0000010-1575043694:726928..727024 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1575043694:725769..726640 | TCONS_00001497-exon-sc0000010-1575043694:725769..726640 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1510915933:730769..730809 | TCONS_00001497-exon-sc0000010-1510915933:730769..730809 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1510915933:727084..727349 | TCONS_00001497-exon-sc0000010-1510915933:727084..727349 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1510915933:726928..727024 | TCONS_00001497-exon-sc0000010-1510915933:726928..727024 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1510915933:725769..726640 | TCONS_00001497-exon-sc0000010-1510915933:725769..726640 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1491911889:730769..730809 | TCONS_00001497-exon-sc0000010-1491911889:730769..730809 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1491911889:727084..727349 | TCONS_00001497-exon-sc0000010-1491911889:727084..727349 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1491911889:726928..727024 | TCONS_00001497-exon-sc0000010-1491911889:726928..727024 | Clytia hemisphaerica | exon |
TCONS_00001497-exon-sc0000010-1491911889:725769..726640 | TCONS_00001497-exon-sc0000010-1491911889:725769..726640 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000010 | supercontig | sc0000010:725769..730809 - |
Blast
The following BLAST results are available for this feature:
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