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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001555 ID=TCONS_00001555|Name=TCONS_00001555|organism=Clytia hemisphaerica|type=transcript|length=918bp
TTGTGATCCTTACGTCAAAGAATGCAAGTTGTCCCCTTTGCCAAAAACTT
CTGGCTGACACGTCAAGTCGGGCTTCGTCTGTTTTGTTGGAGCTGTTTGG
TAGCGATTCTCCAGTTAGAGGTTGTAGGTGAGGTTCGATGGAGACGTCAG
TGTGTACTTGTGAAAGTAGGTTGGCCAAGAGGTTTATCATCTCGTCATGG
CGTTGGTAGATGAAACCTCCTTTCGGACACGAAAGGGCATGGTCGACATC
GAATCGAAGGCCACATGCACAATTGATCGGAAGGTATTTCGGTGTCCATC
TGTACCTCAAGCAAAGGGCATCAACAAATTCTCTTTTGTTCAGACAGAAA
CCTTCGCTTTCAACCGGTATGATCGTCAACCAGCTCGAAGCACCTTTGCA
AGAAGCGAGTTCGTTTGCTTTTCGCTGCTCAACGCTCATCCTCTCCCTAA
GTACTTTCAACGTATCGTTTTCTCGATCTTCCTTCGACTTGGTGATTTCT
CTCTTGACTTTAGCGTCGTCAGGTATGTCGATGTTGCTTGCATTTTGGTT
CTTTATTCGGCGGGACAGGTTGGAAGTTACTTTCTGTGAGCTGGAGAATT
CTGTTATTGACCACGTGGTAAAGATAGGGATTGAAAGACCGCCTTTTCTT
GGTGGCAGTGATAGTAAAAGGCGCTCATCGGCGGAGCAATGGTGACCATC
GGTGATAGCTGGAATGAATATCGTGTCGAGGATTAGGTCGAAAGGTGCAA
GGTATTGGCGCATATCAGGGATTGTTCGGATGTGGTATGTGAGTTTGTGC
TTGAAGCCAGCGGTGAAAGCTACGTAGGCGGATTGCGGTTCGGACTTGGC
AATATCACACAGTACTTTTAGCTGAGAGCACCACTGTTGGACAAGCCCGT
TCACGTATTCATCTTTNN Run BLAST on NCBI protein sequence of TCONS_00001555-protein >TCONS_00001555-protein ID=TCONS_00001555-protein|Name=TCONS_00001555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
KDEYVNGLVQQWCSQLKVLCDIAKSEPQSAYVAFTAGFKHKLTYHIRTIP
DMRQYLAPFDLILDTIFIPAITDGHHCSADERLLLSLPPRKGGLSIPIFT
TWSITEFSSSQKVTSNLSRRIKNQNASNIDIPDDAKVKREITKSKEDREN
DTLKVLRERMSVEQRKANELASCKGASSWLTIIPVESEGFCLNKREFVDA
LCLRYRWTPKYLPINCACGLRFDVDHALSCPKGGFIYQRHDEMINLLANL
LSQVHTDVSIEPHLQPLTGESLPNSSNKTDEARLDVSARSFWQRGQLAFF
DVRIT Run BLAST on NCBI transcript from alignment at sc0000010:1067276..1068193 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001555 ID=TCONS_00001555|Name=TCONS_00001555|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0000010:1067276..1068193 (Clytia hemisphaerica)
NNAAAGATGAATACGTGAACGGGCTTGTCCAACAGTGGTGCTCTCAGCTA
AAAGTACTGTGTGATATTGCCAAGTCCGAACCGCAATCCGCCTACGTAGC
TTTCACCGCTGGCTTCAAGCACAAACTCACATACCACATCCGAACAATCC
CTGATATGCGCCAATACCTTGCACCTTTCGACCTAATCCTCGACACGATA
TTCATTCCAGCTATCACCGATGGTCACCATTGCTCCGCCGATGAGCGCCT
TTTACTATCACTGCCACCAAGAAAAGGCGGTCTTTCAATCCCTATCTTTA
CCACGTGGTCAATAACAGAATTCTCCAGCTCACAGAAAGTAACTTCCAAC
CTGTCCCGCCGAATAAAGAACCAAAATGCAAGCAACATCGACATACCTGA
CGACGCTAAAGTCAAGAGAGAAATCACCAAGTCGAAGGAAGATCGAGAAA
ACGATACGTTGAAAGTACTTAGGGAGAGGATGAGCGTTGAGCAGCGAAAA
GCAAACGAACTCGCTTCTTGCAAAGGTGCTTCGAGCTGGTTGACGATCAT
ACCGGTTGAAAGCGAAGGTTTCTGTCTGAACAAAAGAGAATTTGTTGATG
CCCTTTGCTTGAGGTACAGATGGACACCGAAATACCTTCCGATCAATTGT
GCATGTGGCCTTCGATTCGATGTCGACCATGCCCTTTCGTGTCCGAAAGG
AGGTTTCATCTACCAACGCCATGACGAGATGATAAACCTCTTGGCCAACC
TACTTTCACAAGTACACACTGACGTCTCCATCGAACCTCACCTACAACCT
CTAACTGGAGAATCGCTACCAAACAGCTCCAACAAAACAGACGAAGCCCG
ACTTGACGTGTCAGCCAGAAGTTTTTGGCAAAGGGGACAACTTGCATTCT
TTGACGTAAGGATCACAA Coding sequence (CDS) from alignment at sc0000010:1067276..1068193 >TCONS_00001555 ID=TCONS_00001555|Name=TCONS_00001555|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at sc0000010:1067276..1068193 (Clytia hemisphaerica)
AAAGATGAATACGTGAACGGGCTTGTCCAACAGTGGTGCTCTCAGCTAAA
AGTACTGTGTGATATTGCCAAGTCCGAACCGCAATCCGCCTACGTAGCTT
TCACCGCTGGCTTCAAGCACAAACTCACATACCACATCCGAACAATCCCT
GATATGCGCCAATACCTTGCACCTTTCGACCTAATCCTCGACACGATATT
CATTCCAGCTATCACCGATGGTCACCATTGCTCCGCCGATGAGCGCCTTT
TACTATCACTGCCACCAAGAAAAGGCGGTCTTTCAATCCCTATCTTTACC
ACGTGGTCAATAACAGAATTCTCCAGCTCACAGAAAGTAACTTCCAACCT
GTCCCGCCGAATAAAGAACCAAAATGCAAGCAACATCGACATACCTGACG
ACGCTAAAGTCAAGAGAGAAATCACCAAGTCGAAGGAAGATCGAGAAAAC
GATACGTTGAAAGTACTTAGGGAGAGGATGAGCGTTGAGCAGCGAAAAGC
AAACGAACTCGCTTCTTGCAAAGGTGCTTCGAGCTGGTTGACGATCATAC
CGGTTGAAAGCGAAGGTTTCTGTCTGAACAAAAGAGAATTTGTTGATGCC
CTTTGCTTGAGGTACAGATGGACACCGAAATACCTTCCGATCAATTGTGC
ATGTGGCCTTCGATTCGATGTCGACCATGCCCTTTCGTGTCCGAAAGGAG
GTTTCATCTACCAACGCCATGACGAGATGATAAACCTCTTGGCCAACCTA
CTTTCACAAGTACACACTGACGTCTCCATCGAACCTCACCTACAACCTCT
AACTGGAGAATCGCTACCAAACAGCTCCAACAAAACAGACGAAGCCCGAC
TTGACGTGTCAGCCAGAAGTTTTTGGCAAAGGGGACAACTTGCATTCTTT
GACGTAAGGATCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001555-exon-sc0000010-1491911889:1067276..1068193 | TCONS_00001555-exon-sc0000010-1491911889:1067276..1068193 | Clytia hemisphaerica | exon |
| TCONS_00001555-exon-sc0000010-1510915933:1067276..1068193 | TCONS_00001555-exon-sc0000010-1510915933:1067276..1068193 | Clytia hemisphaerica | exon |
| TCONS_00001555-exon-sc0000010-1575043694:1067276..1068193 | TCONS_00001555-exon-sc0000010-1575043694:1067276..1068193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:1067276..1068193 . |
Blast
The following BLAST results are available for this feature:
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