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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001580 ID=TCONS_00001580|Name=TCONS_00001580|organism=Clytia hemisphaerica|type=transcript|length=270bp
TTTGTGTTTATTTTAGACTAGATGAGTATAAATAATGCAAGAGGATTTCG
CGGTTTTGTTAGCCGccataatatgaaaatattttatacaGTCATAACAA
TGTCAACAGTTACAAACTTAATCATGCTGAAGAAGAAACATGACGATGAA
AACCCTATATTGCCATtgGATAAAGACGAACTTGCTTCTGGAGAGGTTTG
GGTGAAAGGATGGAATCAATGGATGGAAGATTTCAATAGATTAAAGaatt
ttGTTCTTGGTGGACCTTCA Run BLAST on NCBI transcript from alignment at sc0000011:315819..319168+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001580 ID=TCONS_00001580|Name=TCONS_00001580|organism=Clytia hemisphaerica|type=transcript|length=3350bp|location=Sequence derived from alignment at sc0000011:315819..319168+ (Clytia hemisphaerica)
TTTGTGTTTATTTTAGACTAGATGAGTATAAATAATGCAAGAGGATTTCG
CGGTTTTGTTAGCCGccataatatgaaaatattttatacaGTCATAACAA
TGTCAACAGTTACAAACTTAATCATGCTGAAGAAGAAACATGACGATGAA
AACCCTATATTGCCATGTAAGTATATAATTAGTCTCAAAAGAACTTACAC
TTTGAGTGTATTACACCTGCATGCTTTATTATCAAaatgaatatatgttt
tatttttattctctGCAGGTTTTTACTTACAAGGATAAACATATCAAACA
ACACGAGACATACACAGAATCTCTCGGCTTTCTTCACTAtttaccttatt
acatgaatattaGGAGACGTGTAATTAACACGAATGGAAAATATTCGTTT
TCGATAAAAACCCTGTTTATTTCTGAAGGCTTATTCTAAAGGTTAAACCT
GCTCATTCGTGTTAATTTGATGCTGTGttaattttgttgtttatttcGTT
TCAGTTAAATACTTCAATACATATATATTACTTATGTAATAaggtatttc
atttttttctatttcaaaattttcagtgGATAAAGACGAACTTGCTTCTG
GAGAGGTTTGGGTGAAAGGATGGAATCAATGGATGGAAGATTTCAATAGA
TTAAAGGTCTTTATTCtcatatttctgacattaaaataatttttcttagc
AATTTAGTGTACCTATTTATCTACAGTTAGAAGTTACTGCATTACTGCTA
CAAGTTATAATTATAACACAAAAACGATCTTTATTTTCAGTTGAAATATT
GCTTACTACTTCGGATCAAATGTTGCTTACAAAAACATTACAATGACATG
TTTCAAGATAAAATCATTGCACTGTGATGTTGGAACTTTCGTAAAAAAGA
CCTTCTTTTTCAGAAACCAGCATTGTTAGATACTCAGTTCTTTCATcacc
aatttttttatgaattatcTTTTAGAATTTTGTTCTTGGTGGACCTTCAG
ATTGAACATAATGTGATGATAACCATTGGTGCAATCTCATGTGATCTTTC
TCCTTCTCCATTTAATATAGGAGTATGATATTATGCTGAAGAGAAAATTC
TATATTTTCATACATCAATTAGcagtttcaaataaaataaaatagattgg
atcattaaaagcaaacaGGCTAAGATCTATTAAATTTTGTTATAATTTAT
TGTTATAATATAtctcttttgatatataaataatGTTTGAGTGGTTTTTG
ATTGCTTTAAAAATACTTGTACTGGATGCAATTAGGTTGAATTAATTGAT
ACATCCTTCTATATTCTAACTTGTCCAATACTTTCATCACAACCGTTTGA
TCAATATATTGATAAGCAATCATATTTAACTTTGTGTCTTGCGCTTTTTC
TGACCTGAAAAGTACATTTTCAAGCTTTCAGTAAAGCAAGTAGACAAGCT
TTTGTCTTTAATTAATAACTAATTGTTGGGTGTTGCCCTAAAAGCCTTTT
CCTATGAGAAAAGTTTGTGAtgggcaaaatttcaaactaccATCTAGTGT
CATGTAATGAAGGATGTAAAAGTCACCAAACCCATCAATGCTATgtattt
ccattttttcaaaataggaaGCACGTAAAGGAAAGatctctaaagatatt
tcaactGAAGTTAACTGTCCATTGATTAGGCGAAGAGATTTACTGGCAAA
TAGCAAGCTATCAATGAtgaccaaaaaaattgaaatgcgATGTTTTATTG
AAATGTTATAACAATGCTTTTGGAAATAGTTGTCATACTTTTGGCTTAAT
TTATTTGAAATGAGAATCCTTCTGGCTTGAGCTTTATTTGTGAATATTAG
CCAAAACTTTTGAGTTTAAGCCTCAAATTGGTTTTATCCTGTTCTTAAGT
TAAGGGAAAAATTAGGTATATTTAGGCCTTGTATTCTATCATTAataatt
tgattaatttttaaatGTAGCAGTGTCAAACCTGCGGtcatctatttttt
tttttttttgggagggCGGGTTGAGCCTTATTGGTTCTATAAAATCCTAG
AAAAGTGGGAATCCTGAAAATATATAGCTCTATGTCCATAACATAGAGAA
AGATATTTatactttcaaatttttggtcAGGGTATAAGGGGTAATTTTAG
GGACGGTTTAAAGTCTGATTTTATGTCTCACTCCCTCGTTTGTGGTGTTT
CTACTTTATGAAAATGATTGCACTTTACTTGTTGCTTCCAAAGAAAGTCC
TTTGGAGTGTTACCCACTATTATGTCAAGGTTATGATATGTATccaaata
tatttatttttgaatggAAAAAGTTTATCTTATTTTCATCCATTTGTTTT
TTCTAGTAAAATGAANAATTTATTTTTGTACGGAAAAAGTTTATCTTGTT
TTCATCCATTTGTTTGTTCTAGTAAAATGAATACACATATagataataaa
aacaaagcaTGAAAATGGCAGACGATGTATTGAACGACCTGCTGAATgga
gaaatgaaagaaaatgttgTTTTGTCTGCGTTATCTTCCAATATCTACAT
CCCAGTAAGTTGACCTAGATTGATTTGTTCAGATCCATACATTCTGGTCA
CACTGTACAATCTTTTAATGCTTAAGCTACTTCTAGATTGAACAATTATG
ATTTATggcatttttgttttatttttcagtacAAAGGCAATGAAGTCTCC
ATATCAGAATTTATCCCTCATTTCATGGCCTTCTTACGTGCTCGATTACT
CCAAAACACAGATCAAAGTAATGGCCACACTCCTTATTTCTCACCGAGAC
AAAAAGAAGAACAACGAAAAGCTGAGAGAAGCAAAATCAAGAACAAATCT
AATAACATCGGTGGGAAAACAGCTCGCCTCAGTCTCCAATATGCAAGCTC
TCCTCTAAAAACTGTCAACAAAAACAATGAGAATCGAAATTTGAACAACC
AATTACATTCTGGCATTTATGGGATTTCACCAATCAAAGGCATTGAAACA
AAGCGCGGGAAATCTGGCAAACATAAGAGGTTGAATAAGAAagatatttc
tgacattaaaacattttttcttagCAATTTAGTGTACCTATTTTTCTACG
GTTATAAGTTACTGCATTACTGCTACAAGTTATAATTATACCACAAGAAT
GATCCTTTTCTTCGGATCAAATGTTGCTTACAAAAACATTACAATGACAT
GTTTCAAGATAAAATCACCGCACTATGATGTCGAATCCTTCGTCCAATAA
AGACCTTCTGCTTCAGAAACCAGTATTGTTAGATACTCAGTTCTTTCATC
AccaattctttttctttttcttttagaattttGTTCTTGGTGGACCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001580-exon-sc0000011-1491911889:315819..315984 | TCONS_00001580-exon-sc0000011-1491911889:315819..315984 | Clytia hemisphaerica | exon |
| TCONS_00001580-exon-sc0000011-1510915933:315819..315984 | TCONS_00001580-exon-sc0000011-1510915933:315819..315984 | Clytia hemisphaerica | exon |
| TCONS_00001580-exon-sc0000011-1575043694:315819..315984 | TCONS_00001580-exon-sc0000011-1575043694:315819..315984 | Clytia hemisphaerica | exon |
| TCONS_00001580-exon-sc0000011-1491911889:316395..316474 | TCONS_00001580-exon-sc0000011-1491911889:316395..316474 | Clytia hemisphaerica | exon |
| TCONS_00001580-exon-sc0000011-1510915933:316395..316474 | TCONS_00001580-exon-sc0000011-1510915933:316395..316474 | Clytia hemisphaerica | exon |
| TCONS_00001580-exon-sc0000011-1575043694:316395..316474 | TCONS_00001580-exon-sc0000011-1575043694:316395..316474 | Clytia hemisphaerica | exon |
| TCONS_00001580-exon-sc0000011-1491911889:319145..319168 | TCONS_00001580-exon-sc0000011-1491911889:319145..319168 | Clytia hemisphaerica | exon |
| TCONS_00001580-exon-sc0000011-1510915933:319145..319168 | TCONS_00001580-exon-sc0000011-1510915933:319145..319168 | Clytia hemisphaerica | exon |
| TCONS_00001580-exon-sc0000011-1575043694:319145..319168 | TCONS_00001580-exon-sc0000011-1575043694:319145..319168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:315819..319168 + |
Blast
The following BLAST results are available for this feature:
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