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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001613 ID=TCONS_00001613|Name=TCONS_00001613|organism=Clytia hemisphaerica|type=transcript|length=2848bpRun BLAST on NCBI protein sequence of TCONS_00001613-protein >TCONS_00001613-protein ID=TCONS_00001613-protein|Name=TCONS_00001613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=682bp MSRLIRISRDLMKNNLQHAFKNNTWYQTKSRCLSIAATLQHYGPSVLGADRun BLAST on NCBI transcript from alignment at sc0000011:898503..912481+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001613 ID=TCONS_00001613|Name=TCONS_00001613|organism=Clytia hemisphaerica|type=transcript|length=13979bp|location=Sequence derived from alignment at sc0000011:898503..912481+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:898503..912481+ >TCONS_00001613 ID=TCONS_00001613|Name=TCONS_00001613|organism=Clytia hemisphaerica|type=CDS|length=28686bp|location=Sequence derived from alignment at sc0000011:898503..912481+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001613 vs. Swiss-Prot (Human)
Match: ACS2L (Acetyl-coenzyme A synthetase 2-like, mitochondrial OS=Homo sapiens GN=ACSS1 PE=1 SV=2) HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0 Identity = 357/626 (57.03%), Postives = 474/626 (75.72%), Query Frame = 2
Query: 275 MYEQSLSDPETFWGEHARSKLNWIKDFEQVSNSDMNTGKHEWFLNGKINVSENCLDRHVARDPDATALIWEKDEPNTHVKVSYKELLEKTCQVANVLKRKGVQKGDTVCIYMPVSPIAVACMLACTRIGAVHSVVFAGFSAEALSARINDGGSKIVITADEGLRGSKRISLKNTVDKALENC-SVDNVLVYQRTGADVHMQHGRDLYLEEEMSSESIECVPEPMDSEDPLFILYTSGSTGKPKGVQHSQAGYLLYAMMTHKYVFKYEVGDIYACVADIGWITGHSYVVYGPLANGATSVLFESVPTYPDPGRYWEMVERLKVNQFYGAPTAIRLLLKFGNEFVEKYDRDTLKVLGTVGEPINEEAWHWYYDIVGQKKCPISDTWWQTETGGIVISPVPEQDVVPPKPACPMFPFFGVKPILLDEEGKELHGNDVXXXXXXXXXXXXMARTIHGDQERFLDVYYRPYPGYYFTGDGARRDAEGHYHITGRVDDVINVKGVRLGTAEVEDVMDNHDAVAETAVVGYPHEIKGQGVYAYVTLKEGISESEEDIKKELQAMVKSSIGSFAVPEMIQIAPGLPKTRSGKIMRRILRCVAANKPEDVGDISTLADDSVVEEIIANHEKLLQK 2149
+ Q+ +P FWG AR L W + V + D +TGK WFL G++NVS NCLD+HV + P++ ALIWE+DEP T V+++Y+ELLE TC++AN LKR GV +GD V IYMPVSP+AVA MLAC RIGAVH+V+FAGFSAE+L+ RIND K+VIT ++GLRG + + LK VD+A+++C +V +VLV RT VHM D+ LE+EM+ E C PE M SED LF+LYTSGSTG PKG+ H+QAGYLLYA +THK VF ++ GDI+ CVADIGWITGHSYVVYGPL NGATSVLFES P YP+ GRYWE VERLK+NQFYGAPTA+RLLLK+G+ +V+KYDR +L+ LG+VGEPIN EAW W + +VG +C + DTWWQTETGGI I+P P ++ PA M PFFG+ P+L+DE+G + G++VSG LC+ + PGMARTI+GD +RF+D Y++ YPGYYFTGDGA R G+Y ITGR+DDVIN+ G RLGTAE+ED + +H AV E+AV+GYPH+IKG+ +A++ +K+ +S+ + +EL++MV + I +AVP+ I + LPKTRSGK+MRR+LR + ++ +++GD +TL D S++ EI++ ++K K
Sbjct: 61 LSAQAAREPAAFWGPLARDTLVWDTPYHTVWDCDFSTGKIGWFLGGQLNVSVNCLDQHVRKSPESVALIWERDEPGTEVRITYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVAAMLACARIGAVHTVIFAGFSAESLAGRINDAKCKVVITFNQGLRGGRVVELKKIVDEAVKHCPTVQHVLVAHRTDNKVHMGD-LDVPLEQEMAKEDPVCAPESMGSEDMLFMLYTSGSTGMPKGIVHTQAGYLLYAALTHKLVFDHQPGDIFGCVADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRPSEEGAEILPAMAMRPFFGIVPVLMDEKGSVVEGSNVSGALCISQAWPGMARTIYGDHQRFVDAYFKAYPGYYFTGDGAYRTEGGYYQITGRMDDVINISGHRLGTAEIEDAIADHPAVPESAVIGYPHDIKGEAAFAFIVVKDSAGDSDV-VVQELKSMVATKIAKYAVPDEILVVKRLPKTRSGKVMRRLLRKIITSEAQELGDTTTLEDPSIIAEILSVYQKCKDK 684 The following BLAST results are available for this feature:
BLAST of TCONS_00001613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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