TCONS_00001633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001633
Unique NameTCONS_00001633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001633 ID=TCONS_00001633|Name=TCONS_00001633|organism=Clytia hemisphaerica|type=transcript|length=1247bp
agactccacctcaattcgcaagttgctagcaaaataagagacactctaaa
aatccctctaataaaaAAGCCGCTATGGAGACAGgttcgtaagagcctta
atgccccaaacacaccacatgaTCCACTTCGCTTTTGGAACTCGGTTATT
AAGAATTGTAAAGTTCCTTCGGACAAGAAGGGGATGGAGATAAAGGAGGA
CATGAAGTATTGAAGTAAATTACaggcaaattttttaaattgtctgtATA
TTGaacattgtttttcaaaaatacagacAACACATAGGGGACGAAAAAAA
TATAGTTTATAATCCTACAAAATCAAAATAGTCAAAAAGAGTCAAAACTA
ACAATCTATTTGCTGACGAACATTATACAAGATAAACGATTTGAATAGTT
TTGATAAGTTGACAAGTATATAATTTGGAACTCTGCCCTGATATTTCTTA
AAAGAAGAACAAATCTGAGCAAGATGTGTTTAAAGTTCTAGACAGTTGAT
ATTTTCACAAGTATAAAATCAGATAGATAAGTACAAATCGTGTGGCCAAt
ttagttttcttttaaaacaaaatatagaAGGGGGTTGGTCCCATAATTCA
TTCATGAGAAATCAACTATAAAAAATGTGACATAGTTTCTCGGTGTACAT
AAGAATACATACAAAAAAAGTTGCATATCCAGATATAGTACATAAACCCA
GCCCTTAATTTATAGAAAAAACCTGGGTAACAATATTTTAATTCATTTAA
TTttatgtttctaaacttttttttaaactataAAATAGAGGTTTATTTTG
ATGTTGGTTTTTAACGATACAATGAACAGTTTCCCTCGCAAAACCTTTGA
AAGGTATTCCACACTTTTATGTTATGATGAATTCACCTCTCTTGGCATAT
AAGCAAAGCTGTACAATTCATTCCACTGGCAGATTCTCTCTATCGATAAG
CGCAGTGTGCATTATTGATCGACGGAAGCGAGTGGAATTTTTATATTAAG
GTCgtttcaacaaaaaattaattttttaaccaaAGTTAGAGTAAAacaca
tttctttttctttggttgCTCTGGGGGCTCCAATGCAGCCAAAATGGCTT
CGTCAAAAACGTTCTTTAATCCTTTTTGCGTTAAAGCGGAGCATTCGACA
TATTTTACTGCTTTCAATTCTCGTGCTAATTTTTCTCCTTGTTCGAAAGA
GATTGGCTTTTGTTTCGTTTTGGCGAGTTTTTCAACGATGGCGGCAT
Run BLAST on NCBI

transcript from alignment at sc0000011:16934..18392-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001633 ID=TCONS_00001633|Name=TCONS_00001633|organism=Clytia hemisphaerica|type=transcript|length=1459bp|location=Sequence derived from alignment at sc0000011:16934..18392- (Clytia hemisphaerica)
AGACTCCACCTCAATTCGCAAGTTGCTAGCAAAATAAGAGACACTCTAAA
AATCCCTCTAATAAAAAAGCCGCTATGGAGACAGGTTCGTAAGAGCCTTA
ATGCCCCAAACACACCACATGATCCACTTCGCTTTTGGAACTCGGTTATT
AAGAATTGTAAAGTTCCTTCGGACAAGAAGGGGATGGAGATAAAGGAGGA
CATGAAGTATTGAAGTAAATTACAGGCAAATTTTTTAAATTGTCTGTATA
TTGAACATTGTTTTTCAAAAATACAGACAACACATAGGGGACGAAAAAAA
TATAGTTTATAATCCTACAAAATCAAAATAGTCAAAAAGAGTCAAAACTA
ACAATCTATTTGCTGACGAACATTATACAAGATAAACGATTTGAATAGTT
TTGATAAGTTGACAAGTATATAATTTGGAACTCTGCCCTGATATTTCTTA
AAAGAAGAACAAATCTGAGCAAGATGTGTTTAAAGTTCTAGACAGTTGAT
ATTTTCACAAGTATAAAATCAGATAGATAAGTACAAATCGTGTGGCCAAT
TTAGTTTTCTTTTAAAACAAAATATAGAAGGGGGTTGGTCCCATAATTCA
TTCATGAGAAATCAACTATAAAAAATGTGACATAGTTTCTCGGTGTACAC
CCTGATTGAGCAAAGAATAAAAACTGAAGACTTTGGCCATATTTAAAAAA
TCGTTTGAGTGATTGAAACAAAAATGAATATCCCCTGAAAAGCAACGAAG
GAAAAAAATCAGCACAATAAATAAACAAAAAAATTAAAAGTTGAATTGAG
CTCAATCAGGGCATTCATTATGAGAAGTCTTAAAAATTACTATTTTTTCG
AAAGAGGTACATAAGAATACATACAAAAAAAGTTGCATATCCAGATATAG
TACATAAACCCAGCCCTTAATTTATAGAAAAAACCTGGGTAACAATATTT
TAATTCATTTAATTTTATGTTTCTAAACTTTTTTTTAAACTATAAAATAG
AGGTTTATTTTGATGTTGGTTTTTAACGATACAATGAACAGTTTCCCTCG
CAAAACCTTTGAAAGGTATTCCACACTTTTATGTTATGATGAATTCACCT
CTCTTGGCATATAAGCAAAGCTGTACAATTCATTCCACTGGCAGATTCTC
TCTATCGATAAGCGCAGTGTGCATTATTGATCGACGGAAGCGAGTGGAAT
TTTTATATTAAGGTCGTTTCAACAAAAAATTAATTTTTTAACCAAAGTTA
GAGTAAAACACATTTCTTTTTCTTTGGTTGCTCTGGGGGCTCCAATGCAG
CCAAAATGGCTTCGTCAAAAACGTTCTTTAATCCTTTTTGCGTTAAAGCG
GAGCATTCGACATATTTTACTGCTTTCAATTCTCGTGCTAATTTTTCTCC
TTGTTCGAAAGAGATTGGCTTTTGTTTCGTTTTGGCGAGTTTTTCAACGA
TGGCGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000849XLOC_000849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001633-exon-sc0000011-1575043694:17749..18392TCONS_00001633-exon-sc0000011-1575043694:17749..18392Clytia hemisphaericaexon
TCONS_00001633-exon-sc0000011-1575043694:16934..17536TCONS_00001633-exon-sc0000011-1575043694:16934..17536Clytia hemisphaericaexon
TCONS_00001633-exon-sc0000011-1510915933:17749..18392TCONS_00001633-exon-sc0000011-1510915933:17749..18392Clytia hemisphaericaexon
TCONS_00001633-exon-sc0000011-1510915933:16934..17536TCONS_00001633-exon-sc0000011-1510915933:16934..17536Clytia hemisphaericaexon
TCONS_00001633-exon-sc0000011-1491911889:17749..18392TCONS_00001633-exon-sc0000011-1491911889:17749..18392Clytia hemisphaericaexon
TCONS_00001633-exon-sc0000011-1491911889:16934..17536TCONS_00001633-exon-sc0000011-1491911889:16934..17536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:16934..18392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132307	0	0	0.145039	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.13848	0	0	0	0	0	0	0	0	0.170213
Blast
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BLAST of TCONS_00001633 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 8.193e-24
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = -3 
Query: 1069 AIVEKLAKTKQKPISFEQGEKLARELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 1242
            + +EKLAK KQKPI+ E  EKLAR+LKAVKYVECSALTQKGLKNVFDEAILAALEPPE
Sbjct:  124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
The following BLAST results are available for this feature:
BLAST of TCONS_00001633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC428.193e-2484.48Cell division control protein 42 homolog OS=Homo s... [more]
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