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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001652 ID=TCONS_00001652|Name=TCONS_00001652|organism=Clytia hemisphaerica|type=transcript|length=3389bpRun BLAST on NCBI protein sequence of TCONS_00001652-protein >TCONS_00001652-protein ID=TCONS_00001652-protein|Name=TCONS_00001652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=733bp MENELGNNSRNASNGGINLNASENGNNGASRPLYTIPGILHYIQHEWARFRun BLAST on NCBI transcript from alignment at sc0000011:254372..266382- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001652 ID=TCONS_00001652|Name=TCONS_00001652|organism=Clytia hemisphaerica|type=transcript|length=12011bp|location=Sequence derived from alignment at sc0000011:254372..266382- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:254372..266382- >TCONS_00001652 ID=TCONS_00001652|Name=TCONS_00001652|organism=Clytia hemisphaerica|type=CDS|length=41838bp|location=Sequence derived from alignment at sc0000011:254372..266382- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001652 vs. Swiss-Prot (Human)
Match: STRN3 (Striatin-3 OS=Homo sapiens GN=STRN3 PE=1 SV=3) HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0 Identity = 365/757 (48.22%), Postives = 474/757 (62.62%), Query Frame = 2
Query: 161 SRPL-YTIPGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLIRRIKMLEFVLRQERQKFHKLKYGTEM-----KLPESKEEKDEDNSNDVVNKNHELVFNXXXXXXXXXXXXXEIGYTDKVLEMRSARVRSLLGVSTDD---LPDNDNIHSV---------RENQRKLKSGNRHSAADDAGDDKPSSSSQDATKEENNAQGEEGKQRIKSKDG----------DPENE-ALRKFDFL-RKEDDHGRGEGNDAED--QWK-----------NIDSGKLQKRIQQFKNETKDRAMKSKRPKKDALNKMLQPFAGEE--EIXXXXXXXXXXXXNNM--EEGMGDMDEGPLGDVALTSSGYSPRQMKPSLGNHSGV--SPEGVDHTLGLGELAGLTVTDEAGPLSD-NSNRDEVRKTWGPKFTLRSHFDGVRSLCFHPYESALITASEDHTLKLWSLQKSTQGKKGSISDLEPVYTFRGHSGPVLSCVINSNGSVCYSGGLDSTIQCWNIPSLNIDLFGPYDPNIFGETLVAHTDAVWDLAYQIDSDQLLSCSADGTCKLWNPSIKSPLIQSYSCPDV-GNPTSVTFINTDTGQIAASYTSEKCVLFDIETAKPVVTLSTDYNSGTIGS--INKVVSHPTLPVLITAHEDRHIRFFDINSGKEMHNMVAHLDAVTSLSIDSSGLYILSGSHDGSIRLWNMDNKTCIQEITAHRSKFDESVFDVAFHPSQPYIASGGADALAKVFV 2272
SRP YTIPGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDL+RRIKMLE+ L+QER K+HKLKYGTE+ K+P + E+ +D +N +L + + E+GYTD +L++RS RVRSLLG+S + + N+ + + + K SG+ + + S ++ E +G++ + K K G DP+ E AL++FDFL ED G GE + D +W ++D G + K +Q+K E K + KR + L M+ +E IP + M EG + P+ PS G S + S + + LGLG+LA LTVT++A D +N+D RKTW PK+TLRSHFDGVR+L FHP E L+TASEDHTLKLW+LQK+ KK + D+EP+YTFR H GPVLS I+SNG C+SGG+D+TIQ WN+PS ++D + Y+PN+ TLV HTDAVW LAY +QLLSCSADGT +LWNP K P I +Y+ G PTSV FI D + S+ + V++D+ET++ +V LS+ +SG + IN+VVSHPTLPV ITAHEDRHI+FFD +GK +H+MVAHLDAVTSL++D +G+Y++SGSHD SIRLWN+D+KTC+QEITAHR K DES++DVAFH S+ YIAS GADALAKVFV
Sbjct: 58 SRPQQYTIPGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDLKMPTFESEETKDTEAPTAPQNSQLTWKQGRQLLRQYLQ--EVGYTDTILDVRSQRVRSLLGLSNSEPNGSVETKNLEQILNGGESPKQKGQEIKRSSGDVLETFNFLENADDSDEDEENDMIEGIPEGKDKHRMNKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSSGDGTEWDKDDLSPTAEVWDVDQGLISKLKEQYKKERKGKK-GVKRANRTKLYDMIADLGDDELPHIPSGIINQSRSASTRMTDHEGARAEEAEPI--------------TFPSGGGKSFIMGSDDVLLSVLGLGDLADLTVTNDADYSYDLPANKDAFRKTWNPKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWWNMPSPSVDPYDTYEPNVLAGTLVGHTDAVWGLAYSGIKNQLLSCSADGTVRLWNPQEKLPCICTYNGDKKHGIPTSVDFIGCDPAHMVTSFNTGSAVIYDLETSQSLVILSSQVDSGLQSNNHINRVVSHPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHSSKAYIASAGADALAKVFV 797 The following BLAST results are available for this feature:
BLAST of TCONS_00001652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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