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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001764 ID=TCONS_00001764|Name=TCONS_00001764|organism=Clytia hemisphaerica|type=transcript|length=1320bp
GGCCTTAAACGACCTCTTAATAATTTACGAGTATATTGCGCTCCTGGTAG
AATataaaaatgtcaactttgatggtATTTCTTCAGTTGGTTTTAAATTT
GAATCTTAGTAGTCTAACAGCCTACACAATACTTATAAAAGATGAAGaca
ctttttggattttctttGCTACTTTTGGCTATCTTTACACAAGAAACAAC
CGGATTAAGTTTATTGCCATGCGACCAGTATGATTGCCCACCACTTGAAA
AGCTGAGTTGTGGAAGACGCGGCTCGTACCGTACCGAAGTAACTGGAGGA
TGCTGTCATGCATGTTTCAAAGTAGCCGGTCAGAAATGTGGTGGCATCCA
CGATCATGAAGGGTTGTGTAAAGAAGGATTGAAATGTGTCTCCAGAATCA
AGCCTGTGATTCCCATTAACAAACCAGTTGGAATATGCCGACGACCACCA
CAACTTCCACGAAAATGGGAAGCACTTCTTAAAAGTGGAAAAGTGACTTT
TGAACTTCGAGTAGAGCTCAACAAATTATTTCAACGAATCAGAAAATTGA
ATGAagaattttgctgaaaaaaggAACACAGACGCACAGACACGCAGATT
ATAATGccattgtttttattaaaaatcctttgtaaatagaattttttaga
attttaattGACAGACGATGATGGTGATGTTCTCGTATTGTTTTTGAAGa
cgaaatttttataaaattcgaAGTTAATGCACTCTCTTCCATTACGGCTA
ATTATCTTATCCTTTGGGAGTATACCGGACACCATTTCCGACCAtacaat
ttaaaaagtcaaaaagctgACAGCAAgttaaaaaagaataaaatggATTT
GCAAACTGAAACTTCGCAGCTCACTCTTTAGATCTATGGTTGGATAAAAA
TGTTTGCTTGACACTTTTCTTGTGTACTGCCTCTGCCAAAAAAGATAATG
ACGTCACTTGCTTCCATCTAACCTGCTTAATCCTAAAAATGTGATAagga
ttgggctattccagaaatagtctgtacctcCTAtattgaggaggtgtgac
gtccagacgtccagggtggtctggaagaAAATCTAGGATGCTTTTTTGAA
Cgataaaatccagggtggtcagtaaaatcggcttgaaaatccagggtagt
cagtataacgaggtcgaaaatccagggtggttcaaagaaatgggagaaaa
atccagggtgtcacctttaaaaaaaaaaatctcttcaacttttttctgga
atagcccaataaatGTCTGTAAAATCCACTACAGTATACTAAATGTTTTT
TACAACGTAATGATATTAGT Run BLAST on NCBI protein sequence of TCONS_00001764-protein >TCONS_00001764-protein ID=TCONS_00001764-protein|Name=TCONS_00001764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MKTLFGFSLLLLAIFTQETTGLSLLPCDQYDCPPLEKLSCGRRGSYRTEV
TGGCCHACFKVAGQKCGGIHDHEGLCKEGLKCVSRIKPVIPINKPVGICR
RPPQLPRKWEALLKSGKVTFELRVELNKLFQRIRKLNEEFC Run BLAST on NCBI transcript from alignment at sc0000012:158085..160797+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001764 ID=TCONS_00001764|Name=TCONS_00001764|organism=Clytia hemisphaerica|type=transcript|length=2713bp|location=Sequence derived from alignment at sc0000012:158085..160797+ (Clytia hemisphaerica)
GGCCTTAAACGACCTCTTAATAATTTACGAGTATATTGCGCTCCTGGTAG
AATataaaaatgtcaactttgatggtATTTCTTCAGTTGGTTTTAAATTT
GAATCTTAGTAGTCTAACAGCCTACACAATACTTATAAAAGATGAAGaca
ctttttggattttctttGCTACTTTTGGCTATCTTTACACAAGAAACAAC
CGGATTAAGTTTATTGCCATGCGACCAGTATGATTGCCCACCACTTGAAA
AGCTGAGTTGTGGAAGTAAGTGAAATTCTTCGCCATTACTTTTTACTGGA
CTGATTCATTATGAGCATTGCCACTGTTTTATTGAGCATAAAGACAAAAA
CAGTGTAAAGATAATGTTAAAAAACATCGACCTTCAAAGTCAAACGGTCG
ATGGGTTAAAGACCAGAGAAGCCTTGTGGCTAGTGAAGATTCTTTTGAAC
TAAAGTCAGTCTCAGGCAGTTTTCCATTTCAGAGTGTTGATCGGAAAGTT
CACTTATATTTTATCAATCTCGCCTCACAAAAACATTTCctatatatttc
ttttttcgaatGACGTCACTCACTGAGCGACAGGGCCTAAAAGCAAAaga
cctttttataaattacgtcacgaacatcacttgcctcgtattcaaacagt
TACCATGGTAATTATGGTCCTTGGCACATTAAATGCttattttatgaata
gaaagtagtttaaataaaatccactgggagttaatcaccatggcaataac
ttcaaaacgaggtaagtgatgttcgtgacgtaattcatgaaaaggGCTAT
TGGTATGAGACATCAAAAACCTCCACCTTACAGCTTAAGAGGTCGGGAGG
TATAACTGTATTGTGAAGCGAGGTTTTATTTATGTTTTCAATTCTCCGTC
AACTAGGACGCGGCTCGTACCGTACCGAAGTAACTGGAGGATGCTGTCAT
GCATGTTTCAAAGTAGCCGGTCAGAAATGTGGTGGCATCCACGATCATGA
AGGGTTGTGTAAAGAAGGATTGAAATGTGTCTCCAGAATCAAGCCTGTGA
TTCCCATTAACAAACCAGTTGGAATATGCCGTAAGTAAATCATTCTTAGT
GAGTTTATCTATCTGAGTTTATCTAGCTTCTGTCTAGGTCTAAGGATGTA
GAtaacggtaaatcagcacttttaccgtcctcaattttgcgggtcagagC
TGATCGTTTCAGTAACTCCACCGTCCTCTAAAGCTCAAATACATAAGAAG
GGCACAGAGGTACAAAGAGTGCCAATCTCTTCTAACTGTAAATGTCTTTA
CATCGTCAAAACAACTAACAATAGTCTTTCTTGATTCAGCGGTTTTTGTC
CTgacattttcaaatgaaaataattcCAATACCATTATAACGGCTTCAcc
tcaaatattttcagatcaTTACATCTATAGAACAAGACAAAAATAGATTA
AAAACTTTTGGAAGGTAACGACGTACTTCACTACAATACAATCAATAGtt
aaaaaaatctgtttttctTCTAGGACGACCACCACAACTTCCACGAAAAT
GGGAAGCACTTCTTAAAAGTGGAAAAGTGACTTTTGAACTTCGAGTAGAG
CTCAACAAATTATTTCAACGTAAGTTTATAGTCCTGTATAACAAAAGTTA
CACTCCTGCCTCTACGTTTGAAACTTTATAAATATGGATATAGCCTCTAT
ATCAGCTGAGAAACAACGAAATATAGCACATATCGAAGTCAAATTTGAAT
CTTCGGAAATATTTTCTATCTATTTCCCAATTTTGAAATCTATGATATCG
TTAGTCCAGTCAATTTTTTCTCGATTTATCTTAAAAGAGCGACAAGTTCT
GAATTTACGAGACGCTGGACTTGCTCACTCccttaaatctaaaaaaagtt
agaaattttgtttttcttttcatgttAGGAATCAGAAAATTGAATGAaga
attttgctgaaaaaaggAACACAGACGCACAGACACGCAGATTATAATGc
cattgtttttattaaaaatcctttgtaaatagaattttttagaattttaa
ttGACAGACGATGATGGTGATGTTCTCGTATTGTTTTTGAAGacgaaatt
tttataaaattcgaAGTTAATGCACTCTCTTCCATTACGGCTAATTATCT
TATCCTTTGGGAGTATACCGGACACCATTTCCGACCAtacaatttaaaaa
gtcaaaaagctgACAGCAAgttaaaaaagaataaaatggATTTGCAAACT
GAAACTTCGCAGCTCACTCTTTAGATCTATGGTTGGATAAAAATGTTTGC
TTGACACTTTTCTTGTGTACTGCCTCTGCCAAAAAAGATAATGACGTCAC
TTGCTTCCATCTAACCTGCTTAATCCTAAAAATGTGATAaggattgggct
attccagaaatagtctgtacctcCTAtattgaggaggtgtgacgtccaga
cgtccagggtggtctggaagaAAATCTAGGATGCTTTTTTGAACgataaa
atccagggtggtcagtaaaatcggcttgaaaatccagggtagtcagtata
acgaggtcgaaaatccagggtggttcaaagaaatgggagaaaaatccagg
gtgtcacctttaaaaaaaaaaatctcttcaacttttttctggaatagccc
aataaatGTCTGTAAAATCCACTACAGTATACTAAATGTTTTTTACAACG
TAATGATATTAGT Coding sequence (CDS) from alignment at sc0000012:158085..160797+ >TCONS_00001764 ID=TCONS_00001764|Name=TCONS_00001764|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0000012:158085..160797+ (Clytia hemisphaerica)
ATGAAGacactttttggattttctttGCTACTTTTGGCTATCTTTACACA
AGAAACAACCGGATTAAGTTTATTGCCATGCGACCAGTATGATTGCCCAC
CACTTGAAAAGCTGAGTTGTGGAAGACGCGGCTCGTACCGTACCGAAGTA
ACTGGAGGATGCTGTCATGCATGTTTCAAAGTAGCCGGTCAGAAATGTGG
TGGCATCCACGATCATGAAGGGTTGTGTAAAGAAGGATTGAAATGTGTCT
CCAGAATCAAGCCTGTGATTCCCATTAACAAACCAGTTGGAATATGCCGA
CGACCACCACAACTTCCACGAAAATGGGAAGCACTTCTTAAAAGTGGAAA
AGTGACTTTTGAACTTCGAGTAGAGCTCAACAAATTATTTCAACGAATCA
GAAAATTGAATGAagaattttgctgaATGAAGacactttttggattttct
ttGCTACTTTTGGCTATCTTTACACAAGAAACAACCGGATTAAGTTTATT
GCCATGCGACCAGTATGATTGCCCACCACTTGAAAAGCTGAGTTGTGGAA
GACGCGGCTCGTACCGTACCGAAGTAACTGGAGGATGCTGTCATGCATGT
TTCAAAGTAGCCGGTCAGAAATGTGGTGGCATCCACGATCATGAAGGGTT
GTGTAAAGAAGGATTGAAATGTGTCTCCAGAATCAAGCCTGTGATTCCCA
TTAACAAACCAGTTGGAATATGCCGACGACCACCACAACTTCCACGAAAA
TGGGAAGCACTTCTTAAAAGTGGAAAAGTGACTTTTGAACTTCGAGTAGA
GCTCAACAAATTATTTCAACGAATCAGAAAATTGAATGAagaattttgct
gaATGAAGacactttttggattttctttGCTACTTTTGGCTATCTTTACA
CAAGAAACAACCGGATTAAGTTTATTGCCATGCGACCAGTATGATTGCCC
ACCACTTGAAAAGCTGAGTTGTGGAAGACGCGGCTCGTACCGTACCGAAG
TAACTGGAGGATGCTGTCATGCATGTTTCAAAGTAGCCGGTCAGAAATGT
GGTGGCATCCACGATCATGAAGGGTTGTGTAAAGAAGGATTGAAATGTGT
CTCCAGAATCAAGCCTGTGATTCCCATTAACAAACCAGTTGGAATATGCC
GACGACCACCACAACTTCCACGAAAATGGGAAGCACTTCTTAAAAGTGGA
AAAGTGACTTTTGAACTTCGAGTAGAGCTCAACAAATTATTTCAACGAAT
CAGAAAATTGAATGAagaattttgctgaATGAAGacactttttggatttt
ctttGCTACTTTTGGCTATCTTTACACAAGAAACAACCGGATTAAGTTTA
TTGCCATGCGACCAGTATGATTGCCCACCACTTGAAAAGCTGAGTTGTGG
AAGACGCGGCTCGTACCGTACCGAAGTAACTGGAGGATGCTGTCATGCAT
GTTTCAAAGTAGCCGGTCAGAAATGTGGTGGCATCCACGATCATGAAGGG
TTGTGTAAAGAAGGATTGAAATGTGTCTCCAGAATCAAGCCTGTGATTCC
CATTAACAAACCAGTTGGAATATGCCGACGACCACCACAACTTCCACGAA
AATGGGAAGCACTTCTTAAAAGTGGAAAAGTGACTTTTGAACTTCGAGTA
GAGCTCAACAAATTATTTCAACGAATCAGAAAATTGAATGAagaattttg
ctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001764-exon-sc0000012-1491911889:158085..158349 | TCONS_00001764-exon-sc0000012-1491911889:158085..158349 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1510915933:158085..158349 | TCONS_00001764-exon-sc0000012-1510915933:158085..158349 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1575043694:158085..158349 | TCONS_00001764-exon-sc0000012-1575043694:158085..158349 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1491911889:158991..159164 | TCONS_00001764-exon-sc0000012-1491911889:158991..159164 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1510915933:158991..159164 | TCONS_00001764-exon-sc0000012-1510915933:158991..159164 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1575043694:158991..159164 | TCONS_00001764-exon-sc0000012-1575043694:158991..159164 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1491911889:159608..159703 | TCONS_00001764-exon-sc0000012-1491911889:159608..159703 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1510915933:159608..159703 | TCONS_00001764-exon-sc0000012-1510915933:159608..159703 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1575043694:159608..159703 | TCONS_00001764-exon-sc0000012-1575043694:159608..159703 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1491911889:160013..160797 | TCONS_00001764-exon-sc0000012-1491911889:160013..160797 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1510915933:160013..160797 | TCONS_00001764-exon-sc0000012-1510915933:160013..160797 | Clytia hemisphaerica | exon |
| TCONS_00001764-exon-sc0000012-1575043694:160013..160797 | TCONS_00001764-exon-sc0000012-1575043694:160013..160797 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:158085..160797 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009030 | Growth_fac_rcpt_ |
Blast
The following BLAST results are available for this feature:
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