TCONS_00001778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001778
Unique NameTCONS_00001778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001778 ID=TCONS_00001778|Name=TCONS_00001778|organism=Clytia hemisphaerica|type=transcript|length=379bp
CCTCATACGGTTTTTATCATACTCCTTTAGACTGAAATGCAAAGAAGATG
AAGTTGTTTTCAACAAAAACtctgaagattttcttttttcttggcGTGGT
ATCTTTGGTAACCTCTAAAGACACAGAAAAACCGAAACTGGTATCATGTC
CGGGAAACATAGCTAAGGAGATAACTACAGGCAGCATCCGGATATTTTGG
AACCAACCGGTATATACGGACAACTGTGGAAAGACATGCTTAACAATCAT
CCCTGATACATCTAGTGGTTCAAGGTTTTTGGTTGATTCAATCCATACCG
TTCGTTATATAGCAAAAGATCCATCTGGAAACAGAAATGAAGAATGTGTT
TTCACTGTTGAAGTCAAAAGAAAAGGTAC
Run BLAST on NCBI

protein sequence of TCONS_00001778-protein

>TCONS_00001778-protein ID=TCONS_00001778-protein|Name=TCONS_00001778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MKLFSTKTLKIFFFLGVVSLVTSKDTEKPKLVSCPGNIAKEITTGSIRIF
WNQPVYTDNCGKTCLTIIPDTSSGSRFLVDSIHTVRYIAKDPSGNRNEEC
VFTVEVKRKG
Run BLAST on NCBI

transcript from alignment at sc0000012:391079..391693+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001778 ID=TCONS_00001778|Name=TCONS_00001778|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0000012:391079..391693+ (Clytia hemisphaerica)
CCTCATACGGTTTTTATCATACTCCTTTAGACTGAAATGCAAAGAAGATG
AAGTTGTTTTCAACAAAAACtctgaagattttcttttttcttggcGTGGT
ATCTTTGGTAACCTCTAAAGGTAATGAAGTATGTATTTTCTTATTTCATA
TCAACTTAATTCAATATTACACCCCTGTCGGAAAGCCCAAGTGGAGCTTT
TTTTCCACGACGGTGATAACAGTGTCTAAGTCAACAACTCAATATTCCTG
TGAAAAAAATAGTGAAATAAGTGCTGTAAGTGGAGTCTTAAAGTTAATTT
GTTAAAAACTGTAAAATATTGATAGGCCAAAAGAGTATTCTTTGTTTGTC
TTTCAGACACAGAAAAACCGAAACTGGTATCATGTCCGGGAAACATAGCT
AAGGAGATAACTACAGGCAGCATCCGGATATTTTGGAACCAACCGGTATA
TACGGACAACTGTGGAAAGACATGCTTAACAATCATCCCTGATACATCTA
GTGGTTCAAGGTTTTTGGTTGATTCAATCCATACCGTTCGTTATATAGCA
AAAGATCCATCTGGAAACAGAAATGAAGAATGTGTTTTCACTGTTGAAGT
CAAAAGAAAAGGTAC

Coding sequence (CDS) from alignment at sc0000012:391079..391693+

>TCONS_00001778 ID=TCONS_00001778|Name=TCONS_00001778|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000012:391079..391693+ (Clytia hemisphaerica)
ATGAAGTTGTTTTCAACAAAAACtctgaagattttcttttttcttggcGT
GGTATCTTTGGTAACCTCTAAAGACACAGAAAAACCGAAACTGGTATCAT
GTCCGGGAAACATAGCTAAGGAGATAACTACAGGCAGCATCCGGATATTT
TGGAACCAACCGGTATATACGGACAACTGTGGAAAGACATGCTTAACAAT
CATCCCTGATACATCTAGTGGTTCAAGGTTTTTGGTTGATTCAATCCATA
CCGTTCGTTATATAGCAAAAGATCCATCTGGAAACAGAAATGAAGAATGT
GTTTTCACTGTTGAAGTCAAAAGAAAAGGTATGAAGTTGTTTTCAACAAA
AACtctgaagattttcttttttcttggcGTGGTATCTTTGGTAACCTCTA
AAGACACAGAAAAACCGAAACTGGTATCATGTCCGGGAAACATAGCTAAG
GAGATAACTACAGGCAGCATCCGGATATTTTGGAACCAACCGGTATATAC
GGACAACTGTGGAAAGACATGCTTAACAATCATCCCTGATACATCTAGTG
GTTCAAGGTTTTTGGTTGATTCAATCCATACCGTTCGTTATATAGCAAAA
GATCCATCTGGAAACAGAAATGAAGAATGTGTTTTCACTGTTGAAGTCAA
AAGAAAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000954XLOC_000954Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001778-proteinTCONS_00001778-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001778-exon-sc0000012-1491911889:391079..391198TCONS_00001778-exon-sc0000012-1491911889:391079..391198Clytia hemisphaericaexon
TCONS_00001778-exon-sc0000012-1510915933:391079..391198TCONS_00001778-exon-sc0000012-1510915933:391079..391198Clytia hemisphaericaexon
TCONS_00001778-exon-sc0000012-1575043694:391079..391198TCONS_00001778-exon-sc0000012-1575043694:391079..391198Clytia hemisphaericaexon
TCONS_00001778-exon-sc0000012-1491911889:391435..391693TCONS_00001778-exon-sc0000012-1491911889:391435..391693Clytia hemisphaericaexon
TCONS_00001778-exon-sc0000012-1510915933:391435..391693TCONS_00001778-exon-sc0000012-1510915933:391435..391693Clytia hemisphaericaexon
TCONS_00001778-exon-sc0000012-1575043694:391435..391693TCONS_00001778-exon-sc0000012-1575043694:391435..391693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:391079..391693 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.281434	0	0	0	0	0	0	0	30.7491	24.7573	46.8628	96.9879	8.1353	5.79244	239.116	263.394	5.42759	3.33846	9.44825	15.3382	0	0	0.147695	0	23.5224	25.5839
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR003410HYR_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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