TCONS_00001939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001939
Unique NameTCONS_00001939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1112

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001939 ID=TCONS_00001939|Name=TCONS_00001939|organism=Clytia hemisphaerica|type=transcript|length=1112bp
AAATTTTACTGGGAGCTTACCCCTTCGCTACACAAGCAAGGAAAATGAGG
ATGAGCGCTCTGGTTTTCCATCACTGGATCTAAATTTTGCAGCTGGGTTG
GAACAAATTTCTGAACTGAATAAAATCTCAACAACAATTCATGAAAGGAA
CAATCATATCGGATCGTCACGAGAAGTTGATGGAAACAGAAATTACAAAG
TCGATGAAAATGCCACCTTTACAGATTGTCTATTATGATGTTTTGGTTAG
CAGAGTTCACAAAGGATTCGAGAAAATATCTGAAGTTGTTGGTATTAAAG
ATTCATTCTTAATGAAAATTCCAGTCTATTTATCACAAAGCGGTGCTGTT
TGTAAGTTCAAtcttaaaaaaggtaaaaaatatttgattatgGGTCGCAT
CGTTGCTAAACAACTACAAATTACACATTGCAGTTTTGTGAAAGAACTTC
ACACCTTATCTAAGACAGTCAAACATGGTATTAAAGGGCACTATGACTGC
AAATGTCCAGTGACAATGTGTGTCGGTGGTTACTGTGATCAAGACCATGG
ATGCAAATGGAATGTCGCTTGGGATCAACCAGTGGATGAATGTATCATAA
AACATAAATCTTGTCATCAAATACCAGACAAAAAGAATCCATCAGAAATT
CATTGTCATTGGACTAAAAACTCTTTGAGATACAATAAATGCAATTCGAA
AAAAAGACTTATAGCCGAGTTGAAAATGAGGAAAGCTGAAAGATTacttt
taaagaactttcaattataattttttttctaccaAGGTATGAATGCATAT
ACACAATttgtaaagatatttttatttgcttgtaaaattatttcattctg
acaaattattttatttccttttaattttttcccaaaattttcttttgtat
atATGATTCTCCTTATTTTTCGGTATTGTAAATAATATATAGTAACTGTA
TGATGAGAATCTAGACAcatgacatttttcaaaacattacgTATTTGAAA
GAGATTCCTTTGCACTttcccaaaccacacccatgtTATACAAACCTGGT
AGTTTCCCTTTCTGTGGCAAATATATTTGAAAGATTTACATGGTTATAAT
AAATGAATACAC
Run BLAST on NCBI

transcript from alignment at sc0000012:535577..541329-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001939 ID=TCONS_00001939|Name=TCONS_00001939|organism=Clytia hemisphaerica|type=transcript|length=5753bp|location=Sequence derived from alignment at sc0000012:535577..541329- (Clytia hemisphaerica)
AAATTTTACTGGGAGCTTACCCCTTCGCTACACAAGCAAGGAAAATGAGG
ATGAGCGCTCTGGTTTTCCATCACTGGATCTAAATTTTGCAGCTGGGTTG
GAACAAATTTCTGAACTGAATAAAATCTCAACAACAATGTACGTACCTAT
TATACTGCTTTTGTTGGAGGGTTTATGCACAAGTTAAATCACCTTGGGGA
GGGGGCGGTGCAGTGATAGAAATTCTGAAAATGATGTTATTCCTAGGAGA
AAGATGGTAGAGTGAGATGCGGAAAAAACAAAGCTTAGAGAAGTTACGAC
CCGTGGAATACTACCGGGTGCGCCACAAAAAAGTTTTTCTCTTTAAAGTG
AATTTTCTCGAAGTCTAAAAATTTAGAAATAACCAATCCTTTTCCATTGG
AATGAAGAAAGATAAACTTAAATTTTGATAGGTCATTTATAAAATTTGGT
TCATTAGATCAAAAGTTATGCTCAATTGAATAAAAAAGTTACTTTCAAAA
AGTGCTCGAAAACGTTAAAAATTTACCTATCAAAATTTTTATTTTTAAAA
TTTGGCAATTGCAATAGCCTTTACATGATTAAGAGCATTTTTGAGTAACT
TAACACATAAATTTTGAAATTGAAGGGTTGAATAGATTTTAAATCTTCAT
CAAAATCAATTTAATTTATTTTTACCGAAATTTTCCTCAGATTTTTTTAT
TCTAGACTGGATAAAGTCCATGTAAGGCTGGATCTACCTCGAAACCCATA
TTTCATGTATTTTTATGAATTTTATTAGATTTTTTGGCCTTTTTCGACGA
ATTTTCTTCTTTTCATTGAGATTCAACCTTTCTTTATATAACAAAAGGTC
ATTTAGACAACTAATTATCATTTTTAATGACTGCAACGAGAGTACTGATG
TATCATGTAATTATATACTGCTGTTTAAGGGCTCTGACCATAGTGAATTT
TTCATAATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTAACCAACAA
AACTATGGCATGTTATACATTTTCTGTTAGACAAACTATTCCTGAATCTG
AAAATTCAAAAATTACATTGAAAAAATGTGATGAAGAAGAAAATGAAGAA
CTTTTGAAGACTTTTGCGAGGAAGAGTACTTCAACTTTGACGAGCTTAGT
TTCGGCGAAGAAAAAACATTTTGAAAAATTTTTCGCAGTAGATGGTTTAT
CTTTTACCGAACAATAAAAATTTTTGCGGAAAATTTTTGTAAATGCTTCT
TTGTCTCAAAATCTTCAAAATAGTGGATTTTCATCAATTTTACATCTGGA
TTTTGCTTAAAAAAACAGTCATAACTTTTGACACATCTTTTTAGAAAAAT
TTCCCGCAAAATCTAAAATAGTTCAATTCTTTGCGGACAGTTTGAAAAAA
CTTCTAAACAAAAAGGTTAATTACCCATTAAAACTTAGCACTTTTTATAA
AAGAAGGTGATGCAACATATTATTAACGTCTTTTTAAAGTTCATAACGTC
ATTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAAGGCAATTCTTTGTTAAAAGTGT
TAAAGAATCTAAAACATAACTTTCATGTTCAGATACTAAAATCAATTTTC
CGACTATGGTCAGAGCCCTTAATTTGATAAGTCGATTTTTAAAATTTTTG
AGCCCTTTCCGAAAGTAACTTTTTTATTCAATTGAGCATAACCTTTGATC
TAGTGAATCGAATTTAATAAATGACCCATCAAAATTTAAGTTTATCTTTC
TTCTTTCCAATGAAAAAGGATTGGTTATTTTTAAAATTTTAGACTTTGAG
AAAATCAGTTTCAAACTTTTTTGTGGCGCACCCGGTACAATCCGTGCTGA
AATATATTGGCAATTTTGGGTATTTTAACGTTTTTCAGAATTTAAAGCTC
GGGCAAGAATTGCAATTTCAGTACTTCCACTTTGTTTCAGGGGATTTTTC
GATTTGGGAGGGATGAAGTGGCTTCCAGGCTATGTTCTCAACCATATTGG
AACATTTTTGAGATTTCAGATCCTGAGATCCTATGGTCACAAGCCGTAAG
ACTAATGTTAAAACTCGGAGTTAAAACTCTACTTTCTAACCGCGCTTAAT
AATCACTTGAGGTTTTAAAGTTTGAGGAAATTCCCCTTTTGTGCAAAATA
TTTCGGCGCCGATTGTAGGGTTGGAAAATGACGGGTATGTTCCGAACCGG
ACCTAATAAAGACCTCATAAATTTTTTGAACATTCATAGTTTCTTACCCA
TTCAAAAAACCTAAAAATGGGAAAAGACTGTTTTGGCTATTTGTTGTTCA
TGTAACAGAGAGACTAAAAAAATCAACCCTTAAAGTCCGTACATAACAAG
CACCTATTTTTACCTAAGGACCCCCCCGGAGTTACGTACACCAAAGACTT
TGCTCGATCACGAATGGATATTGATGAACTGACAGCAATCAAAGTTTATT
TTACACTTACATAAATTCAGGTGCACTGTGAATTTGAAAACGAGGTAATC
CTCTTAATGGGAAATTATTTTACAAGGACTGTCTGATAAAATAATTATGT
GCCACCTGGGTAATTCTCTTTACAGCTTTTAGGTTAAGAAACTTTTAAAC
TCGATTCAAAAATAATTTGTGATAGTGAAAAAGGTAGCCTTTGTAATCCC
GAATCATTTTCACCTAGTTAAATCATTTTAAAAACCAAGTTAAAGAAAAA
ACTGAGTTATGATGTATAATTTTTGAAAAATTATGTTGTTTTCATAAATC
CTGGCAGGATTAATTTATTCTTAATTTTAATTTTGTAACTCACTTTTATT
TTTTTATGAAAATATGAAAATTTCGATCGACATAATGACTCATTTTGTTT
GTAATTCGGCTTTTTTGAATCGGGTAAAAACAGCTGAGGATTTCCGATTT
TCTTCAACTTGAATTTTTAAATCAACTGAAGGCACATTTATTTAGCTTTT
TACGGTGAAAAGTCCATTCTGAAGGGAGTCTTTGTCATAGAAATACGAAG
CTTCAAGTACAACAAGGTCGAGATAAAAAAGTTTGAGATTTTGATTGACA
GCTTTCTTTTTTTGTCACTTTAATGAAATTTGCCAATTTCATGGTCAACT
TGTAACGAGCTTTTAAGTCTAATTTCCCATTAATGAAATGCTGGATGAAT
GTAATTTTTTTCAGCAGTGGAAAGAATACAATATTTCTTTTACACTTCTT
ACGCTTTTAGATGATGAAAGTCTTGAGTTACCTTTTTCTGGAAGAACTTA
ATTGATGTCCAATGTCAAACCCTTGTGTACTTAACAAAAAAGAACAAAAA
AGCTGTTTGAAGTAAATTATTAATCACAAAAAGCTTAGTAGGTCTGTTTT
AAGCTAACCTAAAAACTAAGCTGAATGGTTCAGTACTTCTTTCAAAAAAT
TGCCTTATTTTTCAGCATACACGTTTTTTTATAAGATCATCTAAAATTTT
TGAAGCCTTCGGACGAGGGGCAAATCACTAAAATAAATCTCGTACACAAT
TTTATAAATCAAAAATAAATCAATAAATCAAAAATAAATCATGAATAAAT
CATAAATAAATAAAAAATAAATAAAACATTTTTCGAAAAAAAATTGACTT
TTCAACTTTTTTTAATTTTTTGACAATGATTTTGATTATCAGTTCGTTAT
AATTTGAAAAAAAAAATCCATAAAATTACTCCTATTAATAAATTAGAGAT
GAATCAAAAATAATTCAAAAAAAAATCATAAATAAATCATAAATCAAAAA
TAAATCAAAAATAAATCATAAATAAAAGATAAATCAGAAATAAATCATAA
ATCAAAAATAAATCAAAAAAAAAATCATAAATAAAAAAAAAATCATAAAT
CTCGTACACCATTTTTCGAGTGATTTGCCCCTCGCCTTCGGATATTCTTA
ACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAACCTGTTCTTAATACTT
TGGCTGGTAAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAACGT
GTACTTTATTGTGATACACCCTATACAACAAACATATTTCTAGGAAGTTT
GCTTTTTAAAGGAGGGTGATAGAAGGATGGAGGGGGAGAGTAGAATGTCA
ACATTTTTATTGAAGTCACGTTACGTCAATTACTCAAGTATATAACAATG
ATTCTGATGATTTGACAGGCATGTAAATTAGTATAAATAGACCGTCATTT
AGATTGAAACAAGTCAGTTTAGTTTACCCATTCAAACAGTTTGTCGGCGG
TAAAGAAAGATTAAAAGGATATTGTTGCGTTGGAATTGTCCGCAAAGCTA
TAGTTTGACTTATACAGGAAAAATGATTCTCACTTCAGTTCTGTTACTTT
TATCGTTCAGAACTTTCGTATTGGGTGGAGTTGAGGAGACTTGCAAATGT
TTACCGTTACATCCACAAACGGCTTTTTGCCAAGCAAATTTTGGTAAGCT
TTCTTGATTTTCATGTTTTGTTTTTGTAATCTGAAACTCGAAGGTGTGAA
ACCTGACACTTAAGTCTCTTAAGGTACGCACATACCCAGCCTTCCTTTCC
CAGTCTTCCTTAACCTTTTGACCAACAAAACTTTATAACCGATAAACAAA
GGTCTTATGATTTTTCTTTCCTATTCCAGTCATGAAAGGAACAATCATAT
CGGATCGTCACGAGAAGTTGATGGAAACAGAAATTACAAAGTCGATGAAA
ATGCCACCTTTACAGATTGTCTATTATGATGTTTTGGTTAGCAGAGTTCA
CAAAGGATTCGAGAAAATATCTGAAGTTGTTGGTATTAAAGATTCATTCT
TAATGAAAATTCCAGTCTATTTATCACAAAGCGGTGCTGTTTGTAAGTTC
AATCTTAAAAAAGGTAAAAAATATTTGATTATGGGTCGCATCGTTGCTAA
ACAACTACAAATTACACATTGCAGTTTTGTGAAAGAACTTCACACCTTAT
CTAAGACAGTCAAACATGGTATTAAAGGGCACTATGACTGCAAATGTCCA
GTGACAATGTGTGTCGGTGGTTACTGTGATCAAGACCATGGATGCAAATG
GAATGTCGCTTGGGATCAACCAGTGGATGAATGTATCATAAAACATAAAT
CTTGTCATCAAATACCAGACAAAAAGAATCCATCAGAAATTCATTGTCAT
TGGACTAAAAACTCTTTGAGATACAATAAATGCAATTCGAAAAAAAGACT
TATAGCCGAGTTGAAAATGAGGAAAGCTGAAAGATTACTTTTAAAGAACT
TTCAATTATAATTTTTTTTCTACCAAGGTATGAATGCATATACACAATTT
GTAAAGATATTTTTATTTGCTTGTAAAATTATTTCATTCTGACAAATTAT
TTTATTTCCTTTTAATTTTTTCCCAAAATTTTCTTTTGTATATATGATTC
TCCTTATTTTTCGGTATTGTAAATAATATATAGTAACTGTATGATGAGAA
TCTAGACACATGACATTTTTCAAAACATTACGTATTTGAAAGAGATTCCT
TTGCACTTTCCCAAACCACACCCATGTTATACAAACCTGGTAGTTTCCCT
TTCTGTGGCAAATATATTTGAAAGATTTACATGGTTATAATAAATGAATA
CAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001003XLOC_001003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001939-exon-sc0000012-1575043694:541192..541329TCONS_00001939-exon-sc0000012-1575043694:541192..541329Clytia hemisphaericaexon
TCONS_00001939-exon-sc0000012-1575043694:535577..536550TCONS_00001939-exon-sc0000012-1575043694:535577..536550Clytia hemisphaericaexon
TCONS_00001939-exon-sc0000012-1510915933:541192..541329TCONS_00001939-exon-sc0000012-1510915933:541192..541329Clytia hemisphaericaexon
TCONS_00001939-exon-sc0000012-1510915933:535577..536550TCONS_00001939-exon-sc0000012-1510915933:535577..536550Clytia hemisphaericaexon
TCONS_00001939-exon-sc0000012-1491911889:541192..541329TCONS_00001939-exon-sc0000012-1491911889:541192..541329Clytia hemisphaericaexon
TCONS_00001939-exon-sc0000012-1491911889:535577..536550TCONS_00001939-exon-sc0000012-1491911889:535577..536550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:535577..541329 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.235733	0	0	0.122273	0	0	0	0.958072	0	0	0.692924	0	0	0	0	0	0	0	0	0	2.1159	0.180535	2.90008	5.80419	0	0	72.9658	33.4334	21.9472	15.7878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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