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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001977 ID=TCONS_00001977|Name=TCONS_00001977|organism=Clytia hemisphaerica|type=transcript|length=1828bp
TGAGTCCTTTCCCTAAAGCTGAATTCCTTCATTCGTAAAAGTAGCCAGGA
CCGTCTATCATAAAAGAACCAACACAACAAATCATGTCCAAAAGAAAGGC
AGCTGAACAATCTTCAAGTGATGACACTCAAGatgtATCAGTCAAGGGTT
ACATCATGAATATGTCACCTGTCCGCACATCAAAGAATTCAAAACCttat
ttcaatttgaatgtGGAAGTGGAAGAAGGGACTGTCGTCAAAGCAGTCTG
TCATGCCCCCAGAAAAAGGAGGTTGTTTGAGGAGGCTGAAGCCATCGGAA
TAGGAGTTAGCATCAGCCAAGCCCAATCATACAGTGATGGCACCCTCAAG
ATTTATGAGAAGACGTCAGTCAAACATGAAGTGTTGGGCTTCAAACCCAA
ATACCAGATTGAAATTACCACACTGTCAAAAGTCGTAAATGAAGTGCCAG
TTGGCAATTATGTCAACGTTCAAGGTGTCGTCCAGCTGGATGAAGTCGAA
CAAGTTATGACATCCGGTGGTGAAATACCAATGAGGCGAGGCCACATTTC
AGATGAAAACGAATTTATTAAAATTGTACTTTGGCGTGAGTATGCAACAT
TGCTAACAGATAAGCAATGTTATACGTTGTGTAACTTGAAAAAAGGGATC
TACAACAATGTTGAAGAACTGCATACCTCTCATACAACATCTTTCAAACT
TGCCAAACAACCTACTTCATTTAAAACACCTGATAGTGGTGATGCGACTG
AATTAACCAACTGTTCCATTGTTGGTACCAAATTTATCCACACTGTAAAA
TGCTTGTTCTGTACTGCCAAAATCGATTGCAAGGAGGAAACAGGAGATGT
TGAGTGTCCACATTGTAAGGGTACCTCAGTGATATCATCGATTGGTCAAC
AGAAGTATTGGAAATTGTTTGTCAACCATGATGGGAGAATTGTAAAGCTC
GACGTTACTGCAGATAAGCTTCCAACGTTAAAGTATGACCAGGTAAAATC
TTATTTGTTGACAAACAAATTTGCCATTACATACCTTTCTATGTCTGGAT
TGATAAGCAGAATGTTGTTGGTTAGAAAACCACAACCTGAAGAGGATAAG
GAAAACTTGTTCAGAAAACCACAATCTGAAGAGGATAAGGAAACCACAAC
CTGAAGAGGATAAGGAAACCACATACAAGGATCaatagttttattttgtt
ctcttttaaacttgttattttcttttgttgacCATTCTTATAGTATGTAT
gtaaaaaatattcccaaaaattgaTCCCCCACCCCTCTGTCCCACCCTGC
CTCCCTTTTATGCCAGAGAAAAAACATTGACATATTTCAAACAATACCAT
GATGAACACATCGGCTGAAACCCCTCTCCCTCCACTACATATCTACTATA
TGAATATCAGTttatattagttttttttttcactttgtaaATGACAAAAA
GTTTACACTAGTTTTATAACTATTTAataatagtttttttttgttgggaT
GTTGCCTTCTGTATCATTACCCTCgttgaaacaaatgaaactaCTTATAC
TATGGGTATTGGCAAAATTTAACATAAAGTGTACCTCTACTCTTGCAATT
TTTAAATGATACCTGCCCCATTGAAATCAACAAAGATCTTGATTTCTTta
atagaaaaactttttcgatTTGAGAAATCTTGTTGATAaggctttttgat
tttttaacatTTGATTGGAAAATCTGGCTGGAAAAGTCTTTCAATATCCA
TGTATTGAgtaataattgtttttacagtTGATCAAATCGAAACCTATTGA
GTATGTAGCTTTAAACACTTAATGGCAG Run BLAST on NCBI protein sequence of TCONS_00001977-protein >TCONS_00001977-protein ID=TCONS_00001977-protein|Name=TCONS_00001977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MSKRKAAEQSSSDDTQDVSVKGYIMNMSPVRTSKNSKPYFNLNVEVEEGT
VVKAVCHAPRKRRLFEEAEAIGIGVSISQAQSYSDGTLKIYEKTSVKHEV
LGFKPKYQIEITTLSKVVNEVPVGNYVNVQGVVQLDEVEQVMTSGGEIPM
RRGHISDENEFIKIVLWREYATLLTDKQCYTLCNLKKGIYNNVEELHTSH
TTSFKLAKQPTSFKTPDSGDATELTNCSIVGTKFIHTVKCLFCTAKIDCK
EETGDVECPHCKGTSVISSIGQQKYWKLFVNHDGRIVKLDVTADKLPTLK
YDQVKSYLLTNKFAITYLSMSGLISRMLLVRKPQPEEDKENLFRKPQSEE
DKETTT Run BLAST on NCBI transcript from alignment at sc0000012:1110662..1113509- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001977 ID=TCONS_00001977|Name=TCONS_00001977|organism=Clytia hemisphaerica|type=transcript|length=2848bp|location=Sequence derived from alignment at sc0000012:1110662..1113509- (Clytia hemisphaerica)
TGAGTCCTTTCCCTAAAGCTGAATTCCTTCATTCGTAAAAGTAGCCAGGA
CCGTCTATCATAAAAGGTAAGCAAACCAAATCAGATAATATCCCTTAATC
TAAATCTAAAAGTTTAGAAAAGTTTAGTTCAATTACAAGAAGTTCACTTT
GATTTCCAGATGATGAGTGTATTTCTTTCAGAAGCATTTTAATAGGGAAT
GGAGATCTGCCCTGAACCTCTAAACAACTTCACTCAAAGACCTCATCTCT
CGTTTCAGAACCAACACAACAAATCATGTCCAAAAGAAAGGCAGCTGAAC
AATCTTCAAGTGATGACACTCAAGGTATTAAACTTTACTTTAAATATTTG
TCTTTATGGGAAGTGTTGCTATGGTCTTTAAACCTACACATTTCTGAAAT
GGCCCCATTGGAGTGGTGTCACCTTAGTGCTGCGTAAGGGGTCTTGCAGA
AATTATCTACGTGCCCAATGAGGGGTCACTGGTCTAAAAAGGCTATGAGG
CAGACGTATGCCACTTGAGTTTAATTACTATTTTGTTCTTTTGAAGGGTT
AATTTTTTGTCAATTTGTCACATTAAAATTAGAAATTGTGTTTTGATACA
GTACAAGAGACATTTTTTCCTAAAATTCCACTTATCTTAAGGAAGGAGTT
GATTAATCAGTGCAGGGCTATATTCCATTTTTTGTCAAAATCGTTTGGAG
GCCACCGCTTGAGAGGCGACTACTTTTCCAGGCCCTACCAATCGGTAGGT
TGTCAATAATTGGTTCTGAACGAAAAGTAATCGATGGATTGATATTATCA
ATTGATTCTGATAATCAGAATTCTCAGAATCAATCGTTAATCAATCCATC
CATTACCTATCAATTTAAAAAAAATTATTNTAATCGATACTCAGAATCAA
TCGTTAATCAATCAATCAATTACCTATCAATTTGAAAAAAATTATCGATA
ACCTACCAATTGGCAGGGCCTGGAATTTGATTCAATTTTTCAAAAAACTA
ATGTTAGTATCCTGTCAAAATTCCTGTTCAATTTTTTTTAGATGTATCAG
TCAAGGGTTACATCATGAATATGTCACCTGTCCGCACATCAAAGAATTCA
AAACCTTATTTCAATTTGAATGTGGAAGTGGAAGAAGGGACTGTCGTCAA
AGCAGTCTGTCATGCCCCCAGAAAAAGGAGGTTGTTTGAGGAGGCCGAAG
CCATCGGAACNAAACCTTATTTCAATTTGAATGTGGAAGTGGAAGAAGGG
ACTGTCGTCAAAGCAGTCTGTGATGCCTCCAGAAAAAGGAGGTTGTTTGA
GGAGGCTGAAGCCATCGGAATAGGAGTTAGCATCAGCCAAGCCCAATCAT
ACAGTGATGGCACCCTCAAGATTTATGAGAAGACGTCAGTCAAACATGAA
GTGTTGGGCTTCAAACCCAAATACCAGATTGAAATTACCACACTGTCAAA
AGTCGTAAATGAAGTGCCAGTTGGCAATTATGTCAACGTTCAAGGTGTCG
TCCAGCTGGATGAAGTCGAACAAGTTATGACATCCGGTGGTGAAATACCA
ATGAGGCGAGGCCACATTTCAGATGAAAACGAATTTATTAAAATTGTACT
TTGGCGTGAGTATGCAACATTGCTAACAGATAAGCAATGTTATACGTTGT
GTAACTTGAAAAAAGGGATCTACAACAATGTTGAAGAACTGCATACCTCT
CATACAACATCTTTCAAACTTGCCAAACAACCTACTTCATTTAAAACACC
TGATAGTGGTGATGCGACTGAATTAACCAACTGTTCCATTGTTGGTACCA
AATTTATCCACACTGTAAAATGCTTGTTCTGTACTGCCAAAATCGATTGC
AAGGAGGAAACAGGAGATGTTGAGTGTCCACATTGTAAGGGTACCTCAGT
GATATCATCGATTGGTCAACAGAAGTATTGGAAATTGTTTGTCAACCATG
ATGGGAGAATTGTAAAGCTCGACGTTACTGCAGATAAGCTTCCAACGTTA
AAGTATGACCAGGTAAAATCTTATTTGTTGACAAACAAATTTGCCATTAC
ATACCTTTCTATGTCTGGATTGATAAGCAGAATGTTGTTGGTTAGAAAAC
CACAACCTGAAGAGGATAAGGAAAACTTGTTCAGAAAACCACAATCTGAA
GAGGATAAGGAAACCACAACCTGAAGAGGATAAGGAAACCACATACAAGG
ATCAATAGTTTTATTTTGTTCTCTTTTAAACTTGTTATTTTCTTTTGTTG
ACCATTCTTATAGTATGTATGTAAAAAATATTCCCAAAAATTGATCCCCC
ACCCCTCTGTCCCACCCTGCCTCCCTTTTATGCCAGAGAAAAAACATTGA
CATATTTCAAACAATACCATGATGAACACATCGGCTGAAACCCCTCTCCC
TCCACTACATATCTACTATATGAATATCAGTTTATATTAGTTTTTTTTTT
CACTTTGTAAATGACAAAAAGTTTACACTAGTTTTATAACTATTTAATAA
TAGTTTTTTTTTGTTGGGATGTTGCCTTCTGTATCATTACCCTCGTTGAA
ACAAATGAAACTACTTATACTATGGGTATTGGCAAAATTTAACATAAAGT
GTACCTCTACTCTTGCAATTTTTAAATGATACCTGCCCCATTGAAATCAA
CAAAGATCTTGATTTCTTTAATAGAAAAACTTTTTCGATTTGAGAAATCT
TGTTGATAAGGCTTTTTGATTTTTTAACATTTGATTGGAAAATCTGGCTG
GAAAAGTCTTTCAATATCCATGTATTGAGTAATAATTGTTTTTACAGTTG
ATCAAATCGAAACCTATTGAGTATGTAGCTTTAAACACTTAATGGCAG Coding sequence (CDS) from alignment at sc0000012:1110662..1113509- >TCONS_00001977 ID=TCONS_00001977|Name=TCONS_00001977|organism=Clytia hemisphaerica|type=CDS|length=3213bp|location=Sequence derived from alignment at sc0000012:1110662..1113509- (Clytia hemisphaerica)
GCTGAAGCCATCGGAATAGGAGTTAGCATCAGCCAAGCCCAATCATACAG
TGATGGCACCCTCAAGATTTATGAGAAGACGTCAGTCAAACATGAAGTGT
TGGGCTTCAAACCCAAATACCAGATTGAAATTACCACACTGTCAAAAGTC
GTAAATGAAGTGCCAGTTGGCAATTATGTCAACGTTCAAGGTGTCGTCCA
GCTGGATGAAGTCGAACAAGTTATGACATCCGGTGGTGAAATACCAATGA
GGCGAGGCCACATTTCAGATGAAAACGAATTTATTAAAATTGTACTTTGG
CGTGAGTATGCAACATTGCTAACAGATAAGCAATGTTATACGTTGTGTAA
CTTGAAAAAAGGGATCTACAACAATGTTGAAGAACTGCATACCTCTCATA
CAACATCTTTCAAACTTGCCAAACAACCTACTTCATTTAAAACACCTGAT
AGTGGTGATGCGACTGAATTAACCAACTGTTCCATTGTTGGTACCAAATT
TATCCACACTGTAAAATGCTTGTTCTGTACTGCCAAAATCGATTGCAAGG
AGGAAACAGGAGATGTTGAGTGTCCACATTGTAAGGGTACCTCAGTGATA
TCATCGATTGGTCAACAGAAGTATTGGAAATTGTTTGTCAACCATGATGG
GAGAATTGTAAAGCTCGACGTTACTGCAGATAAGCTTCCAACGTTAAAGT
ATGACCAGGTAAAATCTTATTTGTTGACAAACAAATTTGCCATTACATAC
CTTTCTATGTCTGGATTGATAAGCAGAATGTTGTTGGTTAGAAAACCACA
ACCTGAAGAGGATAAGGAAAACTTGTTCAGAAAACCACAATCTGAAGAGG
ATAAGGAAACCACAACCTGAATGTATCAGTCAAGGGTTACATCATGAATA
TGTCACCTGTCCGCACATCAAAGAATTCAAAACCTTATTTCAATTTGAAT
GTGGAAGTGGAAGAAGGGACTGTCGTCAAAGCAGTCTGTCATGCCCCCAG
AAAAAGGAGGTTGTTTGAGGAGATGTCCAAAAGAAAGGCAGCTGAACAAT
CTTCAAGTGATGACACTCAAGGCTGAAGCCATCGGAATAGGAGTTAGCAT
CAGCCAAGCCCAATCATACAGTGATGGCACCCTCAAGATTTATGAGAAGA
CGTCAGTCAAACATGAAGTGTTGGGCTTCAAACCCAAATACCAGATTGAA
ATTACCACACTGTCAAAAGTCGTAAATGAAGTGCCAGTTGGCAATTATGT
CAACGTTCAAGGTGTCGTCCAGCTGGATGAAGTCGAACAAGTTATGACAT
CCGGTGGTGAAATACCAATGAGGCGAGGCCACATTTCAGATGAAAACGAA
TTTATTAAAATTGTACTTTGGCGTGAGTATGCAACATTGCTAACAGATAA
GCAATGTTATACGTTGTGTAACTTGAAAAAAGGGATCTACAACAATGTTG
AAGAACTGCATACCTCTCATACAACATCTTTCAAACTTGCCAAACAACCT
ACTTCATTTAAAACACCTGATAGTGGTGATGCGACTGAATTAACCAACTG
TTCCATTGTTGGTACCAAATTTATCCACACTGTAAAATGCTTGTTCTGTA
CTGCCAAAATCGATTGCAAGGAGGAAACAGGAGATGTTGAGTGTCCACAT
TGTAAGGGTACCTCAGTGATATCATCGATTGGTCAACAGAAGTATTGGAA
ATTGTTTGTCAACCATGATGGGAGAATTGTAAAGCTCGACGTTACTGCAG
ATAAGCTTCCAACGTTAAAGTATGACCAGGTAAAATCTTATTTGTTGACA
AACAAATTTGCCATTACATACCTTTCTATGTCTGGATTGATAAGCAGAAT
GTTGTTGGTTAGAAAACCACAACCTGAAGAGGATAAGGAAAACTTGTTCA
GAAAACCACAATCTGAAGAGGATAAGGAAACCACAACCTGAATGTATCAG
TCAAGGGTTACATCATGAATATGTCACCTGTCCGCACATCAAAGAATTCA
AAACCTTATTTCAATTTGAATGTGGAAGTGGAAGAAGGGACTGTCGTCAA
AGCAGTCTGTCATGCCCCCAGAAAAAGGAGGTTGTTTGAGGAGATGTCCA
AAAGAAAGGCAGCTGAACAATCTTCAAGTGATGACACTCAAGGCTGAAGC
CATCGGAATAGGAGTTAGCATCAGCCAAGCCCAATCATACAGTGATGGCA
CCCTCAAGATTTATGAGAAGACGTCAGTCAAACATGAAGTGTTGGGCTTC
AAACCCAAATACCAGATTGAAATTACCACACTGTCAAAAGTCGTAAATGA
AGTGCCAGTTGGCAATTATGTCAACGTTCAAGGTGTCGTCCAGCTGGATG
AAGTCGAACAAGTTATGACATCCGGTGGTGAAATACCAATGAGGCGAGGC
CACATTTCAGATGAAAACGAATTTATTAAAATTGTACTTTGGCGTGAGTA
TGCAACATTGCTAACAGATAAGCAATGTTATACGTTGTGTAACTTGAAAA
AAGGGATCTACAACAATGTTGAAGAACTGCATACCTCTCATACAACATCT
TTCAAACTTGCCAAACAACCTACTTCATTTAAAACACCTGATAGTGGTGA
TGCGACTGAATTAACCAACTGTTCCATTGTTGGTACCAAATTTATCCACA
CTGTAAAATGCTTGTTCTGTACTGCCAAAATCGATTGCAAGGAGGAAACA
GGAGATGTTGAGTGTCCACATTGTAAGGGTACCTCAGTGATATCATCGAT
TGGTCAACAGAAGTATTGGAAATTGTTTGTCAACCATGATGGGAGAATTG
TAAAGCTCGACGTTACTGCAGATAAGCTTCCAACGTTAAAGTATGACCAG
GTAAAATCTTATTTGTTGACAAACAAATTTGCCATTACATACCTTTCTAT
GTCTGGATTGATAAGCAGAATGTTGTTGGTTAGAAAACCACAACCTGAAG
AGGATAAGGAAAACTTGTTCAGAAAACCACAATCTGAAGAGGATAAGGAA
ACCACAACCTGAATGTATCAGTCAAGGGTTACATCATGAATATGTCACCT
GTCCGCACATCAAAGAATTCAAAACCTTATTTCAATTTGAATGTGGAAGT
GGAAGAAGGGACTGTCGTCAAAGCAGTCTGTCATGCCCCCAGAAAAAGGA
GGTTGTTTGAGGAGATGTCCAAAAGAAAGGCAGCTGAACAATCTTCAAGT
GATGACACTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001977-exon-sc0000012-1575043694:1113444..1113509 | TCONS_00001977-exon-sc0000012-1575043694:1113444..1113509 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1575043694:1113186..1113251 | TCONS_00001977-exon-sc0000012-1575043694:1113186..1113251 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1575043694:1112317..1112468 | TCONS_00001977-exon-sc0000012-1575043694:1112317..1112468 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1575043694:1110662..1112205 | TCONS_00001977-exon-sc0000012-1575043694:1110662..1112205 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1510915933:1113444..1113509 | TCONS_00001977-exon-sc0000012-1510915933:1113444..1113509 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1510915933:1113186..1113251 | TCONS_00001977-exon-sc0000012-1510915933:1113186..1113251 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1510915933:1112317..1112468 | TCONS_00001977-exon-sc0000012-1510915933:1112317..1112468 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1510915933:1110662..1112205 | TCONS_00001977-exon-sc0000012-1510915933:1110662..1112205 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1491911889:1113444..1113509 | TCONS_00001977-exon-sc0000012-1491911889:1113444..1113509 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1491911889:1113186..1113251 | TCONS_00001977-exon-sc0000012-1491911889:1113186..1113251 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1491911889:1112317..1112468 | TCONS_00001977-exon-sc0000012-1491911889:1112317..1112468 | Clytia hemisphaerica | exon |
| TCONS_00001977-exon-sc0000012-1491911889:1110662..1112205 | TCONS_00001977-exon-sc0000012-1491911889:1110662..1112205 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:1110662..1113509 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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