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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001979 ID=TCONS_00001979|Name=TCONS_00001979|organism=Clytia hemisphaerica|type=transcript|length=6866bpRun BLAST on NCBI protein sequence of TCONS_00001979-protein >TCONS_00001979-protein ID=TCONS_00001979-protein|Name=TCONS_00001979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1473bp MVSTPQIKIKENVAGSTAKKQKSEDIDLACKSSKNKKRLSAEKKNSMPSPRun BLAST on NCBI transcript from alignment at sc0000012:1126727..1162938- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001979 ID=TCONS_00001979|Name=TCONS_00001979|organism=Clytia hemisphaerica|type=transcript|length=36212bp|location=Sequence derived from alignment at sc0000012:1126727..1162938- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:1126727..1162938- >TCONS_00001979 ID=TCONS_00001979|Name=TCONS_00001979|organism=Clytia hemisphaerica|type=CDS|length=39798bp|location=Sequence derived from alignment at sc0000012:1126727..1162938- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001979 vs. Swiss-Prot (Human)
Match: DPOLQ (DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2) HSP 1 Score: 840.877 bits (2171), Expect = 0.000e+0 Identity = 413/858 (48.14%), Postives = 600/858 (69.93%), Query Frame = 1
Query: 400 KKRLSAEKKNSMPSPELNSSLQLSQWGLPEVILENYKAKGINKMFEWQKECLLQDQVLDGANLIYSAPTSAGKTLVAEILMLKRVLETEKKAIYILPFVSVAREKMYSLRNQFEEAGINVGGFMGNETPPGGLTNIDIAICTIERANSLINRLMEEDKLSLLGSIVIDEMHMIGDPSRGYLLELLLTKIRFLMAKNATNVGENNESSSNHDNGIQIIGMSATLPNLDMMARWLDARFYVTDYRPVPLDEYLKTSKTIYDCADTVVRTISPEDTIKGDDDDVINLCLETMRDTNSVLIFCPTKNWCEKLSISIA------NYLANNVLSKESDTENIFDKEGLQDVLSELQQTPAGLDPSLEKVVSSGVSYHHAGLTMDERDIIEGAFRRGVLKIIIATSTLSSGVNLPARRVIIRSPMFHGKLIDALVYKQMVGRAGRKGVDTQGESILICKPNEKQKSLAMMTSLLKPVYSCLL-----DASRTMNRALLEVIAGGVAVSPPDVELYAKSTYLNTCL-----AVQTGRHPEEL--ICTSMKFLLENDFIKLRFEKNKDDVNEKSKEQYFPSQLGTATMASSMKPDEAIIVYTELQKARRNFCLENELHIIYQVTPTSICDQWPDLDWYTYYNIWERLSAQCKHVGEMIGVKESFLGRAMQNRVSCVTAEQKRVMRIHRRFYGALVLNDLCNEVPMSDVSRKYKVHKGLLQSLQNSAATYAGMMTVFCKKLGWSCLEVLLEQFQSRLSFGVCRDLCNLVRISLLNRFTARLFYQNGFQTVSAIANASEKEISKLLRESTPFYSNK--LKGKDAEMVGKSVPKCLWLSGKEGLSEQEAGRLIIDEAKRILAADAQALGI 2913
K + E K ++P E + L L+ WGLP+ +LE Y + G+ KMFEWQ ECLL QVL+G NL+YSAPTSAGKTLVAE+L+LKRVLE KKA++ILPFVSVA+EK Y L++ F+E GI V G+MG+ +P +++DIA+CTIERAN LINRL+EE+K+ LLG +V+DE+HM+GD RGYLLELLLTKI ++ K+A+ + +S+ N +QI+GMSATLPNL+++A WL+A Y TD+RPVPL E +K +IYD + +VR P +KGD+D V++LC ET+ D +SVL+FCP+K WCEKL+ IA ++ A ++ I +++ L +V+ +L++ P+GLD L+K V GV++HHAGLT +ERDIIEGAFR+G+++++ ATSTLSSGVNLPARRVIIR+P+F G+ +D L YKQMVGRAGRKGVDT GESILICK +EK K +A++ LKPV SCL + + +M RA+LE+I GGVA + D+ YA T+L + +Q + +L I + +LLEN+FI ++ + + + Y P+ LG+AT++SS+ P + + ++ +LQ+A + F LEN+LHI+Y VTP + + W +DWY ++ +WE+L K V E++GV+E FL R ++ +V T Q R M IH+RF+ +LVL DL +EVP+ ++++KY ++G +QSLQ SAA YAGM+TVF +LGW +E+LL QFQ RL+FG+ R+LC+LVR+SLLN AR+ Y +GF TV+ +A A+ E+ +L+ + PF S + + ++ + + + +W++G++GL+E+EA LI++EA+ IL D +G+
Sbjct: 50 KAAAAGECKPTVPDYERDK-LLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASC---QADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFI-----QSTEASDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTP--MFEDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFKSARKAVDEEEEAVEERRNMRTIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGV 896 HSP 2 Score: 468.774 bits (1205), Expect = 2.397e-133 Identity = 272/634 (42.90%), Postives = 380/634 (59.94%), Query Frame = 3
Query: 4698 IIGFDLKEQLKIIYELCDTLLPKAVLKDPKVAHWLLEPSQREKNLFGITKQWLDEDHVSLTEGLSGGVGTRGFGMVPKPGCSGRVRACVESVLVNQLMSTLHQKLTQENLLAPFLEIEMPSLRTLSIIEINGIGFCDQACXXXXXXXXXXXXXXXXQCYQLAKRTFSLTSPDDVGRVLFIELALPCLTE------------------NGRATRTKGKVKHFRTSKDVLEKLVTYHRLPKLILEWRRINSTLTKIVYPVQRKKLKLPEYSMYRIYTESQFHTSTGRVTFTEPNIQNVPKEFDIKV-----------------------------SVNEPSMKRTVD--AESPGVVKAVSMRGAFVPFEGGVFVSADYSQLELRIMAHLSGDVKLIKAINESKDVFKSIAAEIYRIDADEVMPSQRQQAKQVCYGILYGIGSKSLAEQLETNVEEAAMYVENFKRKFKGVNSFIKKTIDSCRKLGYVSSMAGRKRYLPAISSSDSHARSQAERQSVNTAVQGSAADLVKKAMNNISDKL-------REHFSRLCLKRNXXXXXXXXXXXX----PAKGAFLVLQIHDELLYEVNRKDVDLVLQIIRNGMENAYKLLVKTPVKMHIGNSWGQLKDVE 6419
++ +D + KI+ C L ++ +DPKVA WLL+P +E L I +L + + L EG+ G + G+ SGR RA VES+L+ M+ L+ L +ENL F ++EMPS L+++E+NGIGF CE K +M+ KL ++E Q YQLA +FS TS DD+ VLF+EL LP E NGR R + F TSKDVL KL H LP LILEWRRI + +TK+V+P+QR+K P M RIY SQ HT+TGR+TFTEPNIQNVP++F+IK+ SVN P + ++ A G+ ++SMR AFVPF GG ++ADYSQLELRI+AHLS D +LI+ +N DVF+SIAAE I+ + V RQQAKQ+CYGI+YG+G+KSL EQ+ +AA Y+++FK ++ G+N F+ +T+ +C++ G+V ++ GR+RYLP I ++ + ++ AERQ++NT VQGSAAD+VK A NI +L + H R + ++ + S P +G F +LQ+HDELLYEV +DV V QI++N ME+A KL VK VK+ IG SWG+LKD +
Sbjct: 1962 VVIYDFIQSYKILLLSCGISLEQSY-EDPKVACWLLDPDSQEPTLHSIVTSFLPHE-LPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG---RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN-PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKVKVKIGASWGELKDFD 2589 HSP 3 Score: 90.8929 bits (224), Expect = 9.228e-18 Identity = 50/159 (31.45%), Postives = 88/159 (55.35%), Query Frame = 1
Query: 4216 IIDVASSKTLFLTFIQEWKAKSSFTVAFSCETHKPTSQTTSSKIGRPLRSARDVSTTSKPSAMSSTSNRL-LYTRDDLQLTGLAICWGKKDSYYISLQEDGVRHNELDDTALPPDVCQELPLPVRLKSIQSVLNQHASS--TIMGFDLKEQLKIIYELC 4683
IIDVAS + LF TFI+EW+ K F+++ +CE + + + ++ IG + A S P + + + DD + GLA+CWG +D+YY SLQ++ +H+E+ + +PP + L L R+ +QS L + + +++ +D + KI+ C
Sbjct: 1827 IIDVASDQNLFQTFIKEWRCKKRFSISLACEKIRSLTSSKTATIGSRFKQA------SSPQEIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQ-KHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSC 1978 The following BLAST results are available for this feature:
BLAST of TCONS_00001979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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