TCONS_00001989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001989
Unique NameTCONS_00001989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001989 ID=TCONS_00001989|Name=TCONS_00001989|organism=Clytia hemisphaerica|type=transcript|length=649bp
GCAAAggcagaaaagaaaaaagactcCTACACTTGAAAAAGTTAGTGAAC
GGAAATTTAAGAAGAAACACGAAGTGAGATACCTAGAAGGTACAACAATG
GCTTACGCGACACCGATGCACTACAACAAACGACAGCGATCACAGACCTA
CCACAACCATCAGGACAATGAAAAAATCTACGACGATATCAATCGTAATC
GGGCATGGACAAGTTCAACCAAAACAAGTGATTATAAGTTTCAACTTACG
CCGCTCCAACAACGTGGAGTTGAAATGGCTGATGGCTGCAATGATTTTAT
CCTAACACGTACAGAACAGATAAAGAATCTTAAGAAAGATGAATTCTTAG
ACATTTCAAAACAACGCGTTTTGGATCCGCAACAAATTAAACGAGCGGCT
ATGACGCTCATGAAAACAAATGATAAACAATACCGAGCCATTGAAATGGT
GAAACGTAAAATGAGTGCTCATCACACCAATAAACAATACTTTACGGCAA
TTAACGATAATTGTCCATGGGTTTCACACCCTCTTAATGACTCTTTTATA
CCATTGGAATTCCCAGAAAATTGTACTGAAGATGTCGAACATTTCTTGAA
AAACCGATTTTCAAGAAGATCAGGAGTCACAATTGCTAGTGCTCCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00001989-protein

>TCONS_00001989-protein ID=TCONS_00001989-protein|Name=TCONS_00001989-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
QRQKRKKTPTLEKVSERKFKKKHEVRYLEGTTMAYATPMHYNKRQRSQTY
HNHQDNEKIYDDINRNRAWTSSTKTSDYKFQLTPLQQRGVEMADGCNDFI
LTRTEQIKNLKKDEFLDISKQRVLDPQQIKRAAMTLMKTNDKQYRAIEMV
KRKMSAHHTNKQYFTAINDNCPWVSHPLNDSFIPLEFPENCTEDVEHFLK
NRFSRRSGVTIASAPK
Run BLAST on NCBI

transcript from alignment at sc0000012:307805..308453

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001989 ID=TCONS_00001989|Name=TCONS_00001989|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0000012:307805..308453 (Clytia hemisphaerica)
CTTTGGAGCACTAGCAATTGTGACTCCTGATCTTCTTGAAAATCGGTTTT
TCAAGAAATGTTCGACATCTTCAGTACAATTTTCTGGGAATTCCAATGGT
ATAAAAGAGTCATTAAGAGGGTGTGAAACCCATGGACAATTATCGTTAAT
TGCCGTAAAGTATTGTTTATTGGTGTGATGAGCACTCATTTTACGTTTCA
CCATTTCAATGGCTCGGTATTGTTTATCATTTGTTTTCATGAGCGTCATA
GCCGCTCGTTTAATTTGTTGCGGATCCAAAACGCGTTGTTTTGAAATGTC
TAAGAATTCATCTTTCTTAAGATTCTTTATCTGTTCTGTACGTGTTAGGA
TAAAATCATTGCAGCCATCAGCCATTTCAACTCCACGTTGTTGGAGCGGC
GTAAGTTGAAACTTATAATCACTTGTTTTGGTTGAACTTGTCCATGCCCG
ATTACGATTGATATCGTCGTAGATTTTTTCATTGTCCTGATGGTTGTGGT
AGGTCTGTGATCGCTGTCGTTTGTTGTAGTGCATCGGTGTCGCGTAAGCC
ATTGTTGTACCTTCTAGGTATCTCACTTCGTGTTTCTTCTTAAATTTCCG
TTCACTAACTTTTTCAAGTGTAGgagtcttttttcttttctgccTTTGC

Coding sequence (CDS) from alignment at sc0000012:307805..308453

>TCONS_00001989 ID=TCONS_00001989|Name=TCONS_00001989|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000012:307805..308453 (Clytia hemisphaerica)
CTTTGGAGCACTAGCAATTGTGACTCCTGATCTTCTTGAAAATCGGTTTT
TCAAGAAATGTTCGACATCTTCAGTACAATTTTCTGGGAATTCCAATGGT
ATAAAAGAGTCATTAAGAGGGTGTGAAACCCATGGACAATTATCGTTAAT
TGCCGTAAAGTATTGTTTATTGGTGTGATGAGCACTCATTTTACGTTTCA
CCATTTCAATGGCTCGGTATTGTTTATCATTTGTTTTCATGAGCGTCATA
GCCGCTCGTTTAATTTGTTGCGGATCCAAAACGCGTTGTTTTGAAATGTC
TAAGAATTCATCTTTCTTAAGATTCTTTATCTGTTCTGTACGTGTTAGGA
TAAAATCATTGCAGCCATCAGCCATTTCAACTCCACGTTGTTGGAGCGGC
GTAAGTTGAAACTTATAATCACTTGTTTTGGTTGAACTTGTCCATGCCCG
ATTACGATTGATATCGTCGTAGATTTTTTCATTGTCCTGATGGTTGTGGT
AGGTCTGTGATCGCTGTCGTTTGTTGTAGTGCATCGGTGTCGCGTAAGCC
ATTGTTGTACCTTCTAGGTATCTCACTTCGTGTTTCTTCTTAAATTTCCG
TTCACTAACTTTTTCAAGTGTAGgagtcttttttcttttctgccTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001027XLOC_001027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001989-exon-sc0000012-1491911889:307805..308453TCONS_00001989-exon-sc0000012-1491911889:307805..308453Clytia hemisphaericaexon
TCONS_00001989-exon-sc0000012-1510915933:307805..308453TCONS_00001989-exon-sc0000012-1510915933:307805..308453Clytia hemisphaericaexon
TCONS_00001989-exon-sc0000012-1575043694:307805..308453TCONS_00001989-exon-sc0000012-1575043694:307805..308453Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001989-proteinTCONS_00001989-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:307805..308453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.108736	0	0.103664	0	0.135893	0.0841626	0.653522	0.1074	0	0	0	0	0.121059	0.124082	0.257138	0	0.155918	0	0.462251	0.336203	0.346281	0	2.43235	2.24189	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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