TCONS_00001990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001990
Unique NameTCONS_00001990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001990 ID=TCONS_00001990|Name=TCONS_00001990|organism=Clytia hemisphaerica|type=transcript|length=790bp
AAAGGCATCACATTCACATCGCACAACTCAATTGTCGCACTCTGAACTCT
CTTAACTCACGAAAAGAGATAGTCGTCCACCTTGAGAAATTCAACATTCC
AATATGCTCTATCCAAGAACATCGCTTCCTCCATAATGCAAACGACCCTG
AGATAATTGCTCAACCATTGAATCGTTACACACTATTCACTGCTTCCGCC
TGGAAAGCAGCAAACAATGCAACTATTGGCGGAGTAGGAATCATCATCCG
AACAGATCTTCTACCAATTCTGTCGTCagttcgaaagatttcaaatccTA
TTATCATCGCTGATTTCAGAGGTAACCCAAAATCCAGCATAATATCTTGC
TACTCTTCACATAGCGGTTACGATGAAAAAGATATCGAAAGATTCTACAC
TGAAATGCGCAACCTAGTTCTTACAATACCAAGTCATTCATTCCTCGCAN
CAAAACTGTACGGACAAATCGTATAAATCCTTTACTGTCCAATGTATCAA
CACGGCAAAAACAGTCCTacctaaaaaagaaagaaatgtatCCATAGAAC
CTGAAAGTGTCGCCAAAGCTCGCAAGGAAGTGTTAAACGCACCACTGGAG
GACGTATCGTCAAAACAACAACACCTCAAGGCAACACATTACCAAGAAGA
GGAAACAAGGATCAACATCATCCTAGACGAATTTGACAAGTCCAAATCGA
CAAACAGCTCAAAAAACGCCTGGAAACTTGTTAAGGAACTCTCGGGAAAG
AAAAAGCCCTCTACTTGTTTCATTTCAGGAGACGATAGAC
Run BLAST on NCBI

protein sequence of TCONS_00001990-protein

>TCONS_00001990-protein ID=TCONS_00001990-protein|Name=TCONS_00001990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
RHHIHIAQLNCRTLNSLNSRKEIVVHLEKFNIPICSIQEHRFLHNANDPE
IIAQPLNRYTLFTASAWKAANNATIGGVGIIIRTDLLPILSSVRKISNPI
IIADFRGNPKSSIISCYSSHSGYDEKDIERFYTEMRNLVLTIPSHSFLAX
KLYGQIV
Run BLAST on NCBI

transcript from alignment at sc0000012:322484..323273

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001990 ID=TCONS_00001990|Name=TCONS_00001990|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at sc0000012:322484..323273 (Clytia hemisphaerica)
GTCTATCGTCTCCTGAAATGAAACAAGTAGAGGGCTTTTTCTTTCCCGAG
AGTTCCTTAACAAGTTTCCAGGCGTTTTTTGAGCTGTTTGTCGATTTGGA
CTTGTCAAATTCGTCTAGGATGATGTTGATCCTTGTTTCCTCTTCTTGGT
AATGTGTTGCCTTGAGGTGTTGTTGTTTTGACGATACGTCCTCCAGTGGT
GCGTTTAACACTTCCTTGCGAGCTTTGGCGACACTTTCAGGTTCTATGGa
tacatttctttcttttttaggtAGGACTGTTTTTGCCGTGTTGATACATT
GGACAGTAAAGGATTTATACGATTTGTCCGTACAGTTTTGNTGCGAGGAA
TGAATGACTTGGTATTGTAAGAACTAGGTTGCGCATTTCAGTGTAGAATC
TTTCGATATCTTTTTCATCGTAACCGCTATGTGAAGAGTAGCAAGATATT
ATGCTGGATTTTGGGTTACCTCTGAAATCAGCGATGATAATAggatttga
aatctttcgaactGACGACAGAATTGGTAGAAGATCTGTTCGGATGATGA
TTCCTACTCCGCCAATAGTTGCATTGTTTGCTGCTTTCCAGGCGGAAGCA
GTGAATAGTGTGTAACGATTCAATGGTTGAGCAATTATCTCAGGGTCGTT
TGCATTATGGAGGAAGCGATGTTCTTGGATAGAGCATATTGGAATGTTGA
ATTTCTCAAGGTGGACGACTATCTCTTTTCGTGAGTTAAGAGAGTTCAGA
GTGCGACAATTGAGTTGTGCGATGTGAATGTGATGCCTTT

Coding sequence (CDS) from alignment at sc0000012:322484..323273

>TCONS_00001990 ID=TCONS_00001990|Name=TCONS_00001990|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0000012:322484..323273 (Clytia hemisphaerica)
TTATACGATTTGTCCGTACAGTTTTGNTGCGAGGAATGAATGACTTGGTA
TTGTAAGAACTAGGTTGCGCATTTCAGTGTAGAATCTTTCGATATCTTTT
TCATCGTAACCGCTATGTGAAGAGTAGCAAGATATTATGCTGGATTTTGG
GTTACCTCTGAAATCAGCGATGATAATAggatttgaaatctttcgaactG
ACGACAGAATTGGTAGAAGATCTGTTCGGATGATGATTCCTACTCCGCCA
ATAGTTGCATTGTTTGCTGCTTTCCAGGCGGAAGCAGTGAATAGTGTGTA
ACGATTCAATGGTTGAGCAATTATCTCAGGGTCGTTTGCATTATGGAGGA
AGCGATGTTCTTGGATAGAGCATATTGGAATGTTGAATTTCTCAAGGTGG
ACGACTATCTCTTTTCGTGAGTTAAGAGAGTTCAGAGTGCGACAATTGAG
TTGTGCGATGTGAATGTGATGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001028XLOC_001028Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001990-proteinTCONS_00001990-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001990-exon-sc0000012-1491911889:322484..323273TCONS_00001990-exon-sc0000012-1491911889:322484..323273Clytia hemisphaericaexon
TCONS_00001990-exon-sc0000012-1510915933:322484..323273TCONS_00001990-exon-sc0000012-1510915933:322484..323273Clytia hemisphaericaexon
TCONS_00001990-exon-sc0000012-1575043694:322484..323273TCONS_00001990-exon-sc0000012-1575043694:322484..323273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:322484..323273 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.45438	0.519401	0.943371	0.785826	1.18437	1.20752	2.74773	2.2784	1.89393	2.87672	3.46445	1.28972	10.1039	5.68253	10.1088	7.59998	12.3935	6.1796	4.41758	4.53557	2.87698	3.35065	1.23319	1.54715	3.63343	4.63971	3.84941	0.982946	5.63597	3.73304
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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