TCONS_00001992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001992
Unique NameTCONS_00001992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001992 ID=TCONS_00001992|Name=TCONS_00001992|organism=Clytia hemisphaerica|type=transcript|length=888bp
atttcttttctcagggtttgaatttttgtcaaaaaagttCAAACCACAAT
ATAATATTAATTTGTTGTtatttataataaaaaatgatCAACATTTTAGT
CAGCAATAAAATTATTTgattaaaatattatatatttaagATACAATAAA
TAAGAGgaataaattttcataAATCTGTacgtaaaatgtttttcaaataa
ataaaatctttttgttttgggAGAGCAACTCTGACaatgaaatatttaca
atatatacaagaaaaaaatgatatcTTCAAAACCTATCTATAAATAAGAC
CTAAAAACAAACCGTGAAAataaattcgcgaaaatcggtTCTGCGGTTCG
GAATAAAATTTGCTAAATACTCATTtgcattttttgtcttttttcgtTGA
TAAAGTTTATTGAAAGAACTCAATATCCTCTTCTATAGTGTAAACATGTG
AGTTTCCGAGTCTTCGTATCGTTTTCTTTTCAGCCTTGTCTGCGATCTTC
TTTAAAGTTTTTCGTAAGTCTTTATTAGCGCAACGAGAAACGCATTGCAT
ACGATTCTTTAAGCAAACCATTTTCTCGCTAATGTTTGTTGCGATGCTCT
CACATAAACGTCCTTGTCCGTCGCACTCCATTTGACACGACTGTTTAGAG
CCAGCATCTCTGATAGCCGATACTGTTGATGAAAAAGATTCAGGATCGTT
CGTCGCCACATCATGTAAATGTCTTGATTCGCATAACAAACTTGTTAATG
ATAAAACATACAAGACAATAATTTGATTAACCATTTCTGCAATTATGATG
ACAGTTTACAGAGTAAAATATCAACAGTTGTGTACTCTCTAATATGTTTC
TTATGACTGAATCAATCATGCTTGATACCTCTCTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00001992-protein

>TCONS_00001992-protein ID=TCONS_00001992-protein|Name=TCONS_00001992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MVNQIIVLYVLSLTSLLCESRHLHDVATNDPESFSSTVSAIRDAGSKQSC
QMECDGQGRLCESIATNISEKMVCLKNRMQCVSRCANKDLRKTLKKIADK
AEKKTIRRLGNSHVYTIEEDIEFFQ
Run BLAST on NCBI

transcript from alignment at sc0000012:352553..353440

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001992 ID=TCONS_00001992|Name=TCONS_00001992|organism=Clytia hemisphaerica|type=transcript|length=888bp|location=Sequence derived from alignment at sc0000012:352553..353440 (Clytia hemisphaerica)
AAAAAGAGAGGTATCAAGCATGATTGATTCAGTCATAAGAAACATATTAG
AGAGTACACAACTGTTGATATTTTACTCTGTAAACTGTCATCATAATTGC
AGAAATGGTTAATCAAATTATTGTCTTGTATGTTTTATCATTAACAAGTT
TGTTATGCGAATCAAGACATTTACATGATGTGGCGACGAACGATCCTGAA
TCTTTTTCATCAACAGTATCGGCTATCAGAGATGCTGGCTCTAAACAGTC
GTGTCAAATGGAGTGCGACGGACAAGGACGTTTATGTGAGAGCATCGCAA
CAAACATTAGCGAGAAAATGGTTTGCTTAAAGAATCGTATGCAATGCGTT
TCTCGTTGCGCTAATAAAGACTTACGAAAAACTTTAAAGAAGATCGCAGA
CAAGGCTGAAAAGAAAACGATACGAAGACTCGGAAACTCACATGTTTACA
CTATAGAAGAGGATATTGAGTTCTTTCAATAAACTTTATCAacgaaaaaa
gacaaaaaatgcaAATGAGTATTTAGCAAATTTTATTCCGAACCGCAGAa
ccgattttcgcgaatttatTTTCACGGTTTGTTTTTAGGTCTTATTTATA
GATAGGTTTTGAAgatatcatttttttcttgtatatattgtaaatatttc
attGTCAGAGTTGCTCTcccaaaacaaaaagattttatttatttgaaaaa
cattttacgtACAGATTtatgaaaatttattcCTCTTATTTATTGTATct
taaatatataatattttaatcAAATAATTTTATTGCTGACTAAAATGTTG
atcattttttattataaataACAACAAATTAATATTATATTGTGGTTTGa
acttttttgacaaaaattcaaaccctgagaaaagaaat

Coding sequence (CDS) from alignment at sc0000012:352553..353440

>TCONS_00001992 ID=TCONS_00001992|Name=TCONS_00001992|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000012:352553..353440 (Clytia hemisphaerica)
ATGGTTAATCAAATTATTGTCTTGTATGTTTTATCATTAACAAGTTTGTT
ATGCGAATCAAGACATTTACATGATGTGGCGACGAACGATCCTGAATCTT
TTTCATCAACAGTATCGGCTATCAGAGATGCTGGCTCTAAACAGTCGTGT
CAAATGGAGTGCGACGGACAAGGACGTTTATGTGAGAGCATCGCAACAAA
CATTAGCGAGAAAATGGTTTGCTTAAAGAATCGTATGCAATGCGTTTCTC
GTTGCGCTAATAAAGACTTACGAAAAACTTTAAAGAAGATCGCAGACAAG
GCTGAAAAGAAAACGATACGAAGACTCGGAAACTCACATGTTTACACTAT
AGAAGAGGATATTGAGTTCTTTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001030XLOC_001030Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001992-proteinTCONS_00001992-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001992-exon-sc0000012-1491911889:352553..353440TCONS_00001992-exon-sc0000012-1491911889:352553..353440Clytia hemisphaericaexon
TCONS_00001992-exon-sc0000012-1510915933:352553..353440TCONS_00001992-exon-sc0000012-1510915933:352553..353440Clytia hemisphaericaexon
TCONS_00001992-exon-sc0000012-1575043694:352553..353440TCONS_00001992-exon-sc0000012-1575043694:352553..353440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:352553..353440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.140924	0.11136	1.07481	1.38356	0.836571	11.1258	19.0041	2.40108	17.9657	10.2129	7.86236	13.5637	4.11851	32.4038	14.6633	16.3903	3.68783	7.61408	2.09681	2.2331	2.63663	1.40186	3.08074	2.06446	30.3306	21.6255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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